Wall clock time and date at job start Sun Mar 29 2020 23:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35792 * 117.00093 * 2 1 4 4 C 1.39778 * 119.61985 * 0.02562 * 3 2 1 5 5 C 1.36229 * 120.83912 * 179.97438 * 4 3 2 6 6 C 1.39979 * 119.72433 * 0.02562 * 5 4 3 7 7 C 1.41760 * 119.87089 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.62641 * 180.02562 * 3 2 1 9 9 N 1.34145 * 118.72593 * 179.97438 * 7 6 5 10 10 C 1.31259 * 120.46355 * 0.02562 * 9 7 6 11 11 N 1.32246 * 122.96001 * 359.73302 * 10 9 7 12 12 C 1.32787 * 121.50522 * 0.53950 * 11 10 9 13 13 N 1.37860 * 120.89898 * 179.75419 * 12 11 10 14 14 C 1.36850 * 119.99623 * 359.72285 * 13 12 11 15 15 H 1.08002 * 120.00407 * 359.97438 * 14 13 12 16 16 C 1.38920 * 119.99839 * 179.71966 * 14 13 12 17 17 N 1.31474 * 120.00112 * 0.27467 * 16 14 13 18 18 Si 1.86803 * 119.99989 * 180.27645 * 16 14 13 19 19 H 1.48496 * 109.47187 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99969 * 18 16 14 21 21 H 1.48498 * 109.47018 * 240.00015 * 18 16 14 22 22 H 1.08999 * 109.46860 * 299.99730 * 1 2 3 23 23 H 1.08997 * 109.47400 * 59.99904 * 1 2 3 24 24 H 1.09003 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.58275 * 0.02562 * 4 3 2 26 26 H 1.08000 * 120.13620 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.27216 * 0.02562 * 8 3 2 28 28 H 1.08007 * 118.51860 * 179.97438 * 10 9 7 29 29 H 0.97000 * 120.00579 * 179.71636 * 13 12 11 30 30 H 0.96996 * 120.00370 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2765 2.3771 0.0005 5 6 1.8690 3.6038 0.0011 6 6 3.2655 3.7001 0.0005 7 6 4.0544 2.5222 -0.0011 8 6 3.4228 1.2731 -0.0005 9 7 5.3906 2.6412 -0.0021 10 6 5.9531 3.8271 -0.0011 11 7 5.2589 4.9527 -0.0042 12 6 3.9310 4.9491 0.0020 13 7 3.2198 6.1301 0.0038 14 6 3.8822 7.3276 0.0048 15 1 4.9620 7.3475 0.0046 16 6 3.1656 8.5177 0.0006 17 7 1.8511 8.4936 0.0012 18 14 4.0697 10.1524 -0.0058 19 1 5.5344 9.9079 -0.0049 20 1 3.6962 10.9198 -1.2210 21 1 3.6972 10.9288 1.2039 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 0.1989 2.3056 0.0014 26 1 1.2638 4.4983 0.0019 27 1 4.0093 0.3663 -0.0014 28 1 7.0315 3.8864 -0.0015 29 1 2.2500 6.1123 0.0042 30 1 1.3507 9.3245 -0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:02 Heat of formation + Delta-G solvation = 24.668445 kcal Electronic energy + Delta-G solvation = -16748.499931 eV Core-core repulsion = 13929.942240 eV Total energy + Delta-G solvation = -2818.557691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29972 -38.90170 -36.21767 -35.56527 -33.00251 -31.07623 -29.99826 -29.02111 -27.06757 -25.28775 -23.57296 -22.55157 -20.94962 -18.79965 -18.52604 -17.02576 -16.46955 -15.86369 -15.51962 -15.35982 -14.75607 -14.02396 -13.95976 -13.67348 -13.35203 -12.69724 -12.29497 -12.19252 -12.12107 -11.91442 -11.65559 -11.08248 -10.88731 -10.79693 -10.57751 -10.54480 -9.60265 -9.49984 -8.67977 -7.88347 -7.85820 -7.15283 -7.06567 -4.16023 1.28984 1.74777 2.74755 2.99151 3.05970 3.06420 3.51112 3.73682 3.79062 4.48538 4.60843 5.07002 5.21965 5.24908 5.26802 5.27892 5.44360 5.54385 5.61474 5.78397 5.81672 6.16574 6.57927 6.67063 6.74261 6.80197 6.97873 7.01738 7.22368 7.63879 7.81889 8.13226 8.38327 8.78288 8.96843 9.64146 10.06479 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.032126 B = 0.006071 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.349844 B = 4610.716666 C = 5466.917854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.157 3.843 4 C -0.253 4.253 5 C -0.030 4.030 6 C -0.224 4.224 7 C 0.242 3.758 8 C -0.185 4.185 9 N -0.631 5.631 10 C 0.357 3.643 11 N -0.618 5.618 12 C 0.364 3.636 13 N -0.474 5.474 14 C -0.276 4.276 15 H 0.127 0.873 16 C 0.023 3.977 17 N -0.866 5.866 18 Si 0.947 3.053 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.275 1.275 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.131 0.869 28 H 0.172 0.828 29 H 0.409 0.591 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 -6.515 0.007 7.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.110 3.890 4 C -0.274 4.274 5 C -0.051 4.051 6 C -0.234 4.234 7 C 0.116 3.884 8 C -0.207 4.207 9 N -0.361 5.361 10 C 0.064 3.936 11 N -0.351 5.351 12 C 0.110 3.890 13 N -0.075 5.075 14 C -0.408 4.408 15 H 0.145 0.855 16 C -0.185 4.185 17 N -0.500 5.500 18 Si 0.771 3.229 19 H -0.182 1.182 20 H -0.200 1.200 21 H -0.200 1.200 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.112 0.888 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.149 0.851 28 H 0.189 0.811 29 H 0.247 0.753 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.783 -6.184 0.000 6.781 hybrid contribution -1.425 0.981 -0.003 1.731 sum -4.208 -5.202 -0.003 6.692 Atomic orbital electron populations 1.22979 0.79039 1.03208 1.01349 1.86009 1.20901 1.27605 1.88885 1.18828 0.91855 0.83485 0.94846 1.20568 0.99247 0.92108 1.15447 1.20436 0.93172 0.96993 0.94489 1.18799 0.94564 0.94627 1.15414 1.18156 0.89753 0.90710 0.89783 1.19646 0.90452 0.96864 1.13765 1.68725 1.08984 1.27120 1.31251 1.24149 0.99504 0.82774 0.87130 1.67787 1.05603 1.31369 1.30311 1.18189 0.89063 0.84620 0.97147 1.41063 1.08708 1.02948 1.54747 1.20426 0.94941 0.81249 1.44189 0.85502 1.25717 0.95776 1.01310 0.95659 1.69628 1.05973 1.30698 1.43728 0.85505 0.79981 0.79040 0.78338 1.18239 1.20012 1.20015 0.92804 0.92811 0.88793 0.86164 0.86382 0.85098 0.81108 0.75317 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.80 101.05 0.99 1.31 16 2 O -0.32 -4.96 10.47 -19.09 -0.20 -5.16 16 3 C 0.16 2.79 6.68 -39.14 -0.26 2.53 16 4 C -0.25 -4.31 8.95 -39.73 -0.36 -4.66 16 5 C -0.03 -0.57 9.52 -39.65 -0.38 -0.94 16 6 C -0.22 -4.95 5.76 -106.65 -0.61 -5.57 16 7 C 0.24 5.33 6.61 -84.86 -0.56 4.77 16 8 C -0.18 -3.64 9.97 -39.07 -0.39 -4.03 16 9 N -0.63 -13.94 10.45 -12.66 -0.13 -14.07 16 10 C 0.36 7.61 12.22 -92.22 -1.13 6.49 16 11 N -0.62 -14.58 9.22 -13.54 -0.12 -14.71 16 12 C 0.36 8.63 7.50 -154.87 -1.16 7.47 16 13 N -0.47 -11.29 5.34 -10.74 -0.06 -11.34 16 14 C -0.28 -6.77 9.72 -15.06 -0.15 -6.92 16 15 H 0.13 3.18 7.12 -52.49 -0.37 2.81 16 16 C 0.02 0.55 5.50 -17.45 -0.10 0.45 16 17 N -0.87 -20.81 13.05 55.50 0.72 -20.08 16 18 Si 0.95 18.33 29.55 -169.99 -5.02 13.31 16 19 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H 0.05 0.53 7.63 -51.93 -0.40 0.14 16 23 H 0.05 0.53 7.64 -51.93 -0.40 0.14 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.12 1.67 6.22 -52.49 -0.33 1.34 16 26 H 0.12 2.11 6.56 -52.49 -0.34 1.76 16 27 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 28 H 0.17 2.96 8.06 -52.48 -0.42 2.54 16 29 H 0.41 9.40 6.13 -40.82 -0.25 9.15 16 30 H 0.29 6.37 8.31 -40.82 -0.34 6.03 16 LS Contribution 265.49 15.07 4.00 4.00 Total: -1.00 -27.83 265.49 -7.40 -35.23 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -2.49 Total: 11.92 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -4.10 Total: 0.90 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.41 Total: -60.21 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.20 Total: -5.16 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.83 -7.40 -35.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.902 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds