Wall clock time and date at job start Sun Mar 29 2020 23:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35792 * 117.00093 * 2 1 4 4 C 1.39778 * 119.61985 * 0.02562 * 3 2 1 5 5 C 1.36229 * 120.83912 * 179.97438 * 4 3 2 6 6 C 1.39979 * 119.72433 * 0.02562 * 5 4 3 7 7 C 1.41760 * 119.87089 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.62641 * 180.02562 * 3 2 1 9 9 N 1.34145 * 118.72593 * 179.97438 * 7 6 5 10 10 C 1.31259 * 120.46355 * 0.02562 * 9 7 6 11 11 N 1.32246 * 122.96001 * 359.73302 * 10 9 7 12 12 C 1.32787 * 121.50522 * 0.53950 * 11 10 9 13 13 N 1.37860 * 120.89898 * 179.75419 * 12 11 10 14 14 C 1.36850 * 119.99623 * 359.72285 * 13 12 11 15 15 H 1.08002 * 120.00407 * 359.97438 * 14 13 12 16 16 C 1.38920 * 119.99839 * 179.71966 * 14 13 12 17 17 N 1.31474 * 120.00112 * 0.27467 * 16 14 13 18 18 Si 1.86803 * 119.99989 * 180.27645 * 16 14 13 19 19 H 1.48496 * 109.47187 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99969 * 18 16 14 21 21 H 1.48498 * 109.47018 * 240.00015 * 18 16 14 22 22 H 1.08999 * 109.46860 * 299.99730 * 1 2 3 23 23 H 1.08997 * 109.47400 * 59.99904 * 1 2 3 24 24 H 1.09003 * 109.47280 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.58275 * 0.02562 * 4 3 2 26 26 H 1.08000 * 120.13620 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.27216 * 0.02562 * 8 3 2 28 28 H 1.08007 * 118.51860 * 179.97438 * 10 9 7 29 29 H 0.97000 * 120.00579 * 179.71636 * 13 12 11 30 30 H 0.96996 * 120.00370 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2765 2.3771 0.0005 5 6 1.8690 3.6038 0.0011 6 6 3.2655 3.7001 0.0005 7 6 4.0544 2.5222 -0.0011 8 6 3.4228 1.2731 -0.0005 9 7 5.3906 2.6412 -0.0021 10 6 5.9531 3.8271 -0.0011 11 7 5.2589 4.9527 -0.0042 12 6 3.9310 4.9491 0.0020 13 7 3.2198 6.1301 0.0038 14 6 3.8822 7.3276 0.0048 15 1 4.9620 7.3475 0.0046 16 6 3.1656 8.5177 0.0006 17 7 1.8511 8.4936 0.0012 18 14 4.0697 10.1524 -0.0058 19 1 5.5344 9.9079 -0.0049 20 1 3.6962 10.9198 -1.2210 21 1 3.6972 10.9288 1.2039 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 0.1989 2.3056 0.0014 26 1 1.2638 4.4983 0.0019 27 1 4.0093 0.3663 -0.0014 28 1 7.0315 3.8864 -0.0015 29 1 2.2500 6.1123 0.0042 30 1 1.3507 9.3245 -0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:02 Heat of formation + Delta-G solvation = 8.610875 kcal Electronic energy + Delta-G solvation = -16749.196240 eV Core-core repulsion = 13929.942240 eV Total energy + Delta-G solvation = -2819.254000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.89329 -40.28412 -37.89790 -37.08415 -34.70989 -32.74854 -31.47882 -30.63919 -28.15766 -26.98417 -25.17378 -24.09896 -22.57134 -20.49664 -19.99237 -18.60511 -18.03625 -17.33944 -16.88708 -16.65338 -16.34258 -15.63876 -15.63549 -15.14287 -14.89053 -14.16696 -13.81604 -13.65883 -13.64243 -13.24424 -13.04631 -12.64103 -12.60747 -12.15027 -12.08246 -11.87733 -11.28181 -11.15785 -10.34684 -9.62867 -9.35420 -8.80419 -8.77390 -5.98853 -0.28761 0.15576 1.12395 1.41680 1.50534 1.56615 2.15529 2.23711 2.32297 2.77705 2.87473 3.53850 3.64612 3.77994 3.92358 4.05584 4.20260 4.25651 4.45550 4.46116 4.61642 4.78237 5.00034 5.12604 5.23097 5.24001 5.29940 5.49622 5.53478 6.01795 6.39298 6.45389 6.65198 7.02789 7.24105 7.92151 8.37479 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.032126 B = 0.006071 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.349844 B = 4610.716666 C = 5466.917854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.171 3.829 4 C -0.232 4.232 5 C -0.035 4.035 6 C -0.251 4.251 7 C 0.216 3.784 8 C -0.197 4.197 9 N -0.635 5.635 10 C 0.350 3.650 11 N -0.644 5.644 12 C 0.364 3.636 13 N -0.489 5.489 14 C -0.309 4.309 15 H 0.113 0.887 16 C -0.010 4.010 17 N -0.897 5.897 18 Si 1.008 2.992 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.269 1.269 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.125 0.875 25 H 0.161 0.839 26 H 0.128 0.872 27 H 0.137 0.863 28 H 0.206 0.794 29 H 0.409 0.591 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 -7.834 0.005 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.123 3.877 4 C -0.252 4.252 5 C -0.055 4.055 6 C -0.260 4.260 7 C 0.090 3.910 8 C -0.219 4.219 9 N -0.365 5.365 10 C 0.058 3.942 11 N -0.378 5.378 12 C 0.110 3.890 13 N -0.092 5.092 14 C -0.440 4.440 15 H 0.130 0.870 16 C -0.214 4.214 17 N -0.532 5.532 18 Si 0.830 3.170 19 H -0.185 1.185 20 H -0.194 1.194 21 H -0.194 1.194 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.143 0.857 25 H 0.178 0.822 26 H 0.146 0.854 27 H 0.155 0.845 28 H 0.222 0.778 29 H 0.246 0.754 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.087 -7.578 -0.003 8.609 hybrid contribution -1.136 0.958 -0.002 1.487 sum -5.223 -6.619 -0.005 8.432 Atomic orbital electron populations 1.23428 0.76099 1.05843 1.02528 1.86030 1.23807 1.26110 1.88062 1.18874 0.91442 0.84724 0.92657 1.20982 1.01257 0.90810 1.12141 1.20636 0.92154 0.98479 0.94274 1.18980 0.96052 0.93925 1.17042 1.18504 0.89918 0.91657 0.90877 1.19789 0.91747 0.96211 1.14180 1.68759 1.09500 1.27399 1.30807 1.24817 1.00941 0.82153 0.86294 1.67835 1.06015 1.32507 1.31476 1.18607 0.89526 0.85359 0.95542 1.40980 1.08516 1.02793 1.56939 1.20386 0.94536 0.82221 1.46878 0.86967 1.26450 0.96431 1.03640 0.94878 1.69675 1.06848 1.31512 1.45196 0.84621 0.78596 0.75305 0.78478 1.18501 1.19430 1.19424 0.91544 0.91554 0.85736 0.82176 0.85380 0.84478 0.77757 0.75370 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.80 113.37 1.11 1.36 16 2 O -0.33 -8.88 10.47 -91.22 -0.96 -9.83 16 3 C 0.17 5.59 6.68 22.55 0.15 5.74 16 4 C -0.23 -7.14 8.95 22.17 0.20 -6.94 16 5 C -0.03 -1.28 9.52 22.22 0.21 -1.06 16 6 C -0.25 -11.06 5.76 -21.18 -0.12 -11.18 16 7 C 0.22 9.40 6.61 40.08 0.26 9.67 16 8 C -0.20 -7.48 9.97 22.60 0.23 -7.25 16 9 N -0.64 -28.00 10.45 -193.97 -2.03 -30.02 16 10 C 0.35 14.97 12.22 180.91 2.21 17.18 16 11 N -0.64 -31.07 9.22 -196.74 -1.81 -32.88 16 12 C 0.36 17.67 7.50 133.93 1.00 18.67 16 13 N -0.49 -24.03 5.34 -187.88 -1.00 -25.03 16 14 C -0.31 -15.71 9.72 84.07 0.82 -14.89 16 15 H 0.11 5.88 7.12 -2.91 -0.02 5.86 16 16 C -0.01 -0.46 5.50 84.91 0.47 0.01 16 17 N -0.90 -43.81 13.05 21.66 0.28 -43.53 16 18 Si 1.01 38.05 29.55 68.60 2.03 40.07 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 20 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 21 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 22 H 0.07 0.98 7.63 -2.39 -0.02 0.96 16 23 H 0.07 0.98 7.64 -2.39 -0.02 0.96 16 24 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.16 3.64 6.22 -2.91 -0.02 3.62 16 26 H 0.13 4.45 6.56 -2.91 -0.02 4.43 16 27 H 0.14 4.92 8.06 -2.91 -0.02 4.90 16 28 H 0.21 6.96 8.06 -2.91 -0.02 6.94 16 29 H 0.41 19.36 6.13 -92.71 -0.57 18.79 16 30 H 0.29 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -60.82 265.49 3.67 -57.15 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.62 Total: 32.77 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.54 Total: 11.30 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -4.56 Total: -131.47 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.96 Total: -9.83 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.07 kcal Total: -60.82 3.67 -57.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.762 kcal (2) G-P(sol) polarization free energy of solvation -60.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds