Wall clock time and date at job start Sun Mar 29 2020 23:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36735 * 120.00144 * 2 1 4 4 H 1.08003 * 119.99700 * 229.00649 * 3 2 1 5 5 C 1.39059 * 119.99874 * 49.00957 * 3 2 1 6 6 N 1.31366 * 119.99357 * 194.99193 * 5 3 2 7 7 Si 1.86795 * 120.00158 * 14.98990 * 5 3 2 8 8 H 1.48500 * 109.46956 * 91.39700 * 7 5 3 9 9 H 1.48492 * 109.47488 * 211.39829 * 7 5 3 10 10 H 1.48502 * 109.47183 * 331.40454 * 7 5 3 11 11 C 1.34776 * 119.99911 * 180.02562 * 2 1 3 12 12 O 1.21784 * 120.00039 * 196.60512 * 11 2 1 13 13 C 1.46474 * 120.00131 * 16.59950 * 11 2 1 14 14 C 1.37812 * 119.99981 * 332.30827 * 13 11 2 15 15 C 1.39825 * 120.28477 * 180.02562 * 14 13 11 16 16 C 1.36411 * 120.05056 * 359.95760 * 15 14 13 17 17 C 1.40547 * 119.71792 * 0.02562 * 16 15 14 18 18 C 1.38291 * 133.61971 * 179.97438 * 17 16 15 19 19 N 1.33218 * 107.39910 * 180.02562 * 18 17 16 20 20 C 1.31058 * 109.88982 * 359.97438 * 19 18 17 21 21 N 1.34596 * 109.44951 * 0.26849 * 20 19 18 22 22 H 1.08997 * 109.47371 * 244.17708 * 1 2 3 23 23 H 1.09000 * 109.47300 * 4.17435 * 1 2 3 24 24 H 1.08997 * 109.47401 * 124.17388 * 1 2 3 25 25 H 0.97001 * 119.99133 * 180.02562 * 6 5 3 26 26 H 1.08000 * 119.85674 * 359.97438 * 14 13 11 27 27 H 1.08003 * 119.97795 * 179.97438 * 15 14 13 28 28 H 1.07997 * 120.13722 * 180.02562 * 16 15 14 29 29 H 1.08002 * 126.30129 * 0.02651 * 18 17 16 30 30 H 1.08002 * 125.27205 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1486 1.1841 0.0000 4 1 2.9500 1.3450 -0.7060 5 6 1.8122 2.1812 0.9090 6 7 2.2490 3.4072 0.7305 7 14 0.7392 1.7773 2.3838 8 1 1.6001 1.4047 3.5350 9 1 -0.0785 2.9642 2.7410 10 1 -0.1568 0.6417 2.0479 11 6 2.1388 -1.1672 -0.0005 12 8 3.3186 -1.1894 0.3009 13 6 1.4522 -2.4091 -0.3635 14 6 0.0959 -2.5333 -0.1534 15 6 -0.5655 -3.7164 -0.4972 16 6 0.1309 -4.7542 -1.0438 17 6 1.5142 -4.6286 -1.2588 18 6 2.4792 -5.4716 -1.7789 19 7 3.6402 -4.8192 -1.7412 20 6 3.4639 -3.6243 -1.2326 21 7 2.1667 -3.4601 -0.9131 22 1 -0.3634 -0.4476 0.9250 23 1 -0.3634 1.0249 -0.0748 24 1 -0.3634 -0.5772 -0.8502 25 1 2.0146 4.1027 1.3648 26 1 -0.4585 -1.7137 0.2793 27 1 -1.6285 -3.8085 -0.3300 28 1 -0.3785 -5.6684 -1.3102 29 1 2.3209 -6.4742 -2.1477 30 1 4.2401 -2.8875 -1.0874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155794459.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:23 Heat of formation + Delta-G solvation = 101.720111 kcal Electronic energy + Delta-G solvation = -17451.266169 eV Core-core repulsion = 14636.049688 eV Total energy + Delta-G solvation = -2815.216480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.49511 -39.23029 -36.79539 -35.25956 -32.98260 -32.47649 -30.67317 -28.09323 -27.05887 -25.54546 -23.61272 -22.24663 -21.78602 -19.66330 -17.54512 -17.41436 -16.96796 -16.03997 -15.52790 -15.45448 -15.33889 -14.42273 -14.23395 -13.94953 -13.22905 -12.98933 -12.77026 -12.60352 -12.41466 -11.91325 -11.60002 -11.18640 -10.78174 -10.50653 -10.48796 -10.04588 -10.02218 -9.20015 -9.07639 -8.89651 -7.92009 -7.24610 -6.61615 -4.33124 0.65692 1.47224 2.68660 2.92517 3.07213 3.10806 3.20910 3.43461 3.85314 3.98807 4.12929 4.67731 4.76414 4.82016 5.01433 5.08869 5.10444 5.23876 5.60319 5.69539 5.73340 5.89837 6.00602 6.12661 6.16867 6.29878 6.65259 6.82226 7.30412 7.40166 8.01586 8.13123 8.21131 8.63143 8.96631 9.38427 10.48267 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036585 B = 0.007639 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.150154 B = 3664.517145 C = 4196.077508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.444 5.444 3 C -0.316 4.316 4 H 0.103 0.897 5 C 0.069 3.931 6 N -0.854 5.854 7 Si 0.866 3.134 8 H -0.273 1.273 9 H -0.280 1.280 10 H -0.242 1.242 11 C 0.496 3.504 12 O -0.549 6.549 13 C 0.059 3.941 14 C -0.143 4.143 15 C -0.132 4.132 16 C -0.068 4.068 17 C -0.018 4.018 18 C -0.022 4.022 19 N -0.465 5.465 20 C 0.167 3.833 21 N -0.341 5.341 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.279 0.721 26 H 0.181 0.819 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.178 0.822 30 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.920 -11.373 -1.599 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.165 5.165 3 C -0.443 4.443 4 H 0.121 0.879 5 C -0.140 4.140 6 N -0.488 5.488 7 Si 0.691 3.309 8 H -0.199 1.199 9 H -0.206 1.206 10 H -0.167 1.167 11 C 0.285 3.715 12 O -0.431 6.431 13 C -0.046 4.046 14 C -0.164 4.164 15 C -0.152 4.152 16 C -0.089 4.089 17 C -0.126 4.126 18 C -0.178 4.178 19 N -0.179 5.179 20 C -0.109 4.109 21 N -0.011 5.011 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.197 0.803 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.195 0.805 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.409 -11.299 -1.625 14.178 hybrid contribution -1.261 0.326 1.089 1.698 sum -9.670 -10.973 -0.536 14.636 Atomic orbital electron populations 1.23075 0.83650 1.03428 0.99550 1.43289 1.04338 1.04699 1.64142 1.19010 1.19418 0.87405 1.18505 0.87921 1.25606 0.96594 0.94745 0.97051 1.69676 1.42864 1.00622 1.35620 0.87242 0.80949 0.79324 0.83375 1.19904 1.20581 1.16678 1.17611 0.87931 0.81955 0.84023 1.90748 1.16278 1.85262 1.50827 1.20787 0.91943 0.89944 1.01902 1.22754 0.92109 1.00643 1.00898 1.20955 1.00542 0.92969 1.00775 1.20526 0.90147 0.99770 0.98410 1.19742 0.94428 0.88862 1.09601 1.22536 0.87253 1.00367 1.07678 1.70082 1.26648 1.03988 1.17159 1.25151 0.84408 0.97188 1.04149 1.42823 1.09262 1.10856 1.38194 0.91586 0.90016 0.91951 0.91094 0.80269 0.84509 0.83956 0.80471 0.76805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.78 6.36 59.84 0.38 1.17 16 2 N -0.44 -10.11 2.36 -124.26 -0.29 -10.40 16 3 C -0.32 -8.44 9.18 -15.06 -0.14 -8.58 16 4 H 0.10 3.07 8.06 -52.48 -0.42 2.65 16 5 C 0.07 1.80 5.23 -17.45 -0.09 1.71 16 6 N -0.85 -23.47 13.95 55.50 0.77 -22.69 16 7 Si 0.87 18.75 26.87 -169.99 -4.57 14.18 16 8 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.24 -4.49 4.07 56.52 0.23 -4.26 16 11 C 0.50 11.42 7.28 -12.94 -0.09 11.33 16 12 O -0.55 -14.55 15.35 5.11 0.08 -14.47 16 13 C 0.06 1.13 6.65 -81.71 -0.54 0.59 16 14 C -0.14 -2.13 7.88 -39.14 -0.31 -2.44 16 15 C -0.13 -1.58 10.03 -39.65 -0.40 -1.97 16 16 C -0.07 -0.84 10.08 -39.37 -0.40 -1.24 16 17 C -0.02 -0.29 6.80 -84.09 -0.57 -0.86 16 18 C -0.02 -0.35 12.03 -16.93 -0.20 -0.55 16 19 N -0.47 -8.60 11.19 -13.98 -0.16 -8.75 16 20 C 0.17 3.26 11.89 -90.31 -1.07 2.19 16 21 N -0.34 -6.48 2.98 -58.58 -0.17 -6.66 16 22 H 0.07 1.03 4.65 -51.93 -0.24 0.78 16 23 H 0.08 1.42 6.63 -51.93 -0.34 1.07 16 24 H 0.06 0.91 6.12 -51.93 -0.32 0.59 16 25 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.18 2.39 3.30 -53.12 -0.18 2.21 16 27 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 28 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.22 4.24 7.06 -52.49 -0.37 3.87 16 LS Contribution 252.70 15.07 3.81 3.81 Total: -1.00 -31.89 252.70 -6.42 -38.30 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -2.45 Total: 5.34 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -3.44 Total: 1.34 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.15 Total: -48.51 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.57 Total: 14.18 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.89 -6.42 -38.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155794459.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.022 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds