Wall clock time and date at job start Sun Mar 29 2020 22:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48503 * 109.46892 * 274.98391 * 3 2 1 5 5 H 1.48493 * 109.46998 * 34.98574 * 3 2 1 6 6 H 1.48503 * 109.47201 * 154.98537 * 3 2 1 7 7 C 1.40053 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 186.14636 * 7 2 1 9 9 C 1.46376 * 119.99809 * 6.14457 * 7 2 1 10 10 O 1.21685 * 120.00175 * 353.94316 * 9 7 2 11 11 N 1.34783 * 119.99451 * 173.94189 * 9 7 2 12 12 C 1.46504 * 119.99532 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.46925 * 179.97438 * 12 11 9 14 14 C 1.40814 * 119.68802 * 270.02161 * 13 12 11 15 15 C 1.35877 * 119.76969 * 179.97438 * 14 13 12 16 16 C 1.40973 * 119.17417 * 359.97438 * 15 14 13 17 17 C 1.38002 * 133.70703 * 180.02562 * 16 15 14 18 18 N 1.33400 * 107.45657 * 179.71920 * 17 16 15 19 19 C 1.30905 * 109.87444 * 0.43340 * 18 17 16 20 20 N 1.35035 * 109.36481 * 359.55715 * 19 18 17 21 21 C 1.34664 * 119.68909 * 89.99730 * 13 12 11 22 22 H 0.97006 * 119.99825 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00185 * 0.02562 * 11 9 7 24 24 H 1.08996 * 109.47059 * 59.99816 * 12 11 9 25 25 H 1.08998 * 109.46589 * 299.99548 * 12 11 9 26 26 H 1.07991 * 120.11572 * 359.97438 * 14 13 12 27 27 H 1.07998 * 120.41691 * 179.97438 * 15 14 13 28 28 H 1.08000 * 126.26617 * 359.97438 * 17 16 15 29 29 H 1.07994 * 125.31280 * 179.82861 * 19 18 17 30 30 H 1.08004 * 119.72555 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4949 2.6199 0.8027 6 1 3.5870 1.4120 0.5920 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2812 -2.4768 -0.1368 10 8 0.0644 -2.4826 -0.1387 11 7 1.9610 -3.6341 -0.2601 12 6 1.2347 -4.8991 -0.3971 13 6 2.2197 -6.0333 -0.5181 14 6 2.6771 -6.4269 -1.7904 15 6 3.5656 -7.4489 -1.9014 16 6 4.0151 -8.0986 -0.7339 17 6 4.8890 -9.1405 -0.4987 18 7 4.9381 -9.3316 0.8206 19 6 4.1445 -8.4826 1.4231 20 7 3.5514 -7.6930 0.5021 21 6 2.6544 -6.6604 0.5914 22 1 -0.4850 0.8401 0.0004 23 1 2.9309 -3.6295 -0.2582 24 1 0.6096 -4.8644 -1.2893 25 1 0.6072 -5.0545 0.4805 26 1 2.3231 -5.9183 -2.6748 27 1 3.9230 -7.7597 -2.8720 28 1 5.4362 -9.6963 -1.2457 29 1 3.9918 -8.4202 2.4903 30 1 2.2946 -6.3460 1.5600 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161228657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:32 Heat of formation + Delta-G solvation = 46.359283 kcal Electronic energy + Delta-G solvation = -16383.964926 eV Core-core repulsion = 13566.347820 eV Total energy + Delta-G solvation = -2817.617106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.77001 -38.24694 -36.92066 -33.68662 -33.33701 -32.43285 -30.68633 -28.23918 -26.90239 -25.13367 -23.29983 -22.00337 -21.43352 -19.78207 -17.96570 -17.44268 -16.60329 -15.84432 -15.55802 -15.31269 -14.73468 -14.49543 -14.11217 -13.68539 -13.44125 -13.36925 -12.42221 -12.02061 -11.86462 -11.59630 -11.36981 -11.18834 -10.96410 -10.76645 -10.53111 -10.32707 -10.28075 -9.24882 -8.91780 -7.74625 -7.66915 -7.50063 -6.27147 -4.71870 0.78013 1.22298 2.59382 3.02446 3.09678 3.17322 3.20618 3.36492 4.06121 4.39844 4.50466 4.55689 4.65899 4.84699 4.89013 4.98684 5.02754 5.40642 5.58335 5.62739 5.78772 5.92839 6.13295 6.21341 6.37766 6.52607 6.58986 7.13396 7.36878 7.80030 7.81926 7.94397 8.23987 8.95202 9.40287 10.50285 10.68160 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043377 B = 0.004427 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.349702 B = 6323.102527 C = 6458.540357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.764 5.764 12 C 0.178 3.822 13 C -0.096 4.096 14 C -0.102 4.102 15 C -0.083 4.083 16 C 0.001 3.999 17 C -0.030 4.030 18 N -0.458 5.458 19 C 0.133 3.867 20 N -0.363 5.363 21 C 0.055 3.945 22 H 0.269 0.731 23 H 0.382 0.618 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.209 0.791 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.071 -12.414 -1.612 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.462 6.462 11 N -0.421 5.421 12 C 0.052 3.948 13 C -0.099 4.099 14 C -0.123 4.123 15 C -0.103 4.103 16 C -0.108 4.108 17 C -0.184 4.184 18 N -0.172 5.172 19 C -0.142 4.142 20 N -0.033 5.033 21 C -0.066 4.066 22 H 0.080 0.920 23 H 0.213 0.787 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.157 0.843 27 H 0.163 0.837 28 H 0.195 0.805 29 H 0.225 0.775 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.427 -12.900 -1.021 14.448 hybrid contribution 0.430 1.403 -0.352 1.509 sum 6.858 -11.497 -1.373 13.457 Atomic orbital electron populations 1.70019 1.07099 1.27405 1.35003 1.25703 0.94609 1.00331 0.92539 0.86349 0.80234 0.81391 0.78747 1.19742 1.20395 1.18874 1.20872 0.94133 0.89437 1.53773 0.91349 1.18265 0.87152 0.82225 0.76476 1.90608 1.14043 1.86197 1.55388 1.46263 1.08685 1.04967 1.82147 1.19718 0.91470 0.81627 1.01951 1.19854 0.99688 0.98330 0.92057 1.21119 0.96977 0.96648 0.97535 1.20485 0.97683 0.95852 0.96275 1.19783 1.03542 1.01660 0.85859 1.22472 1.03323 0.99725 0.92913 1.69966 1.18414 1.22089 1.06708 1.24827 0.99236 0.93581 0.96519 1.42927 1.28771 1.22950 1.08635 1.21569 0.93910 0.89903 1.01190 0.92015 0.78685 0.91591 0.92084 0.84268 0.83687 0.80505 0.77461 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.47 11.85 55.55 0.66 -21.81 16 2 C 0.09 2.40 5.49 -17.37 -0.10 2.31 16 3 Si 0.91 19.68 29.56 -169.99 -5.03 14.66 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.55 -14.97 9.54 -35.63 -0.34 -15.31 16 8 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 9 C 0.55 15.15 7.74 -12.98 -0.10 15.05 16 10 O -0.58 -18.12 15.05 5.20 0.08 -18.04 16 11 N -0.76 -16.01 5.54 -62.90 -0.35 -16.36 16 12 C 0.18 3.09 5.78 -5.19 -0.03 3.06 16 13 C -0.10 -1.32 5.21 -104.91 -0.55 -1.87 16 14 C -0.10 -1.26 9.73 -39.45 -0.38 -1.64 16 15 C -0.08 -0.94 10.11 -39.39 -0.40 -1.34 16 16 C 0.00 0.01 6.80 -84.09 -0.57 -0.56 16 17 C -0.03 -0.37 12.02 -16.96 -0.20 -0.58 16 18 N -0.46 -6.37 11.19 -13.95 -0.16 -6.53 16 19 C 0.13 1.64 12.75 -90.04 -1.15 0.50 16 20 N -0.36 -4.73 2.94 -62.43 -0.18 -4.91 16 21 C 0.05 0.70 10.57 -16.47 -0.17 0.53 16 22 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 23 H 0.38 7.21 8.44 -40.82 -0.34 6.86 16 24 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 25 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 26 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.21 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -34.67 274.24 -7.68 -42.35 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -2.84 Total: 6.37 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -3.99 Total: 0.14 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.03 Total: -49.61 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.08 Total: -18.04 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.67 -7.68 -42.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161228657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.707 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds