Wall clock time and date at job start Sun Mar 29 2020 23:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30708 * 1 3 3 Si 1.86797 * 120.00599 * 2 1 4 4 H 1.48496 * 109.47722 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47226 * 300.00116 * 3 2 1 6 6 H 1.48501 * 109.46941 * 59.99589 * 3 2 1 7 7 C 1.40124 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.40963 * 120.00189 * 0.02562 * 7 2 1 10 10 N 1.33928 * 120.26099 * 9.80966 * 9 7 2 11 11 C 1.31686 * 119.87250 * 180.27384 * 10 9 7 12 12 C 1.38990 * 120.42286 * 359.49443 * 11 10 9 13 13 N 1.32235 * 120.53174 * 0.25608 * 12 11 10 14 14 C 1.32424 * 120.11140 * 359.97438 * 13 12 11 15 15 N 1.39072 * 120.21129 * 179.97438 * 14 13 12 16 16 C 1.36074 * 126.49939 * 43.18012 * 15 14 13 17 17 N 1.30452 * 108.53284 * 179.86639 * 16 15 14 18 18 C 1.34199 * 109.39644 * 0.40835 * 17 16 15 19 19 C 1.50700 * 125.87695 * 179.72149 * 18 17 16 20 20 N 1.46897 * 109.47219 * 275.02619 * 19 18 17 21 21 C 1.34590 * 108.24386 * 359.75201 * 18 17 16 22 22 H 0.97004 * 119.99777 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.78534 * 179.76835 * 11 10 9 24 24 H 1.08003 * 119.73230 * 180.27689 * 12 11 10 25 25 H 1.07998 * 125.73423 * 0.02562 * 16 15 14 26 26 H 1.09000 * 109.46901 * 35.02800 * 19 18 17 27 27 H 1.08999 * 109.46833 * 155.03186 * 19 18 17 28 28 H 1.00898 * 111.00155 * 179.97438 * 20 19 18 29 29 H 1.00900 * 111.00285 * 303.95971 * 20 19 18 30 30 H 1.07997 * 126.58311 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.7012 1.3463 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3964 1.2125 7 6 2.0076 -1.2136 0.0005 8 1 3.0877 -1.2136 0.0010 9 6 1.3028 -2.4343 0.0005 10 7 -0.0218 -2.4489 -0.1971 11 6 -0.6734 -3.5932 -0.1902 12 6 0.0061 -4.7889 0.0106 13 7 1.3145 -4.7940 0.2024 14 6 1.9901 -3.6551 0.2041 15 7 3.3661 -3.6580 0.4061 16 6 4.2637 -4.5176 -0.1479 17 7 5.4562 -4.2028 0.2772 18 6 5.3698 -3.1551 1.1113 19 6 6.5233 -2.4925 1.8195 20 7 6.8156 -3.2172 3.0634 21 6 4.0756 -2.7983 1.2071 22 1 -0.4850 0.8401 -0.0004 23 1 -1.7421 -3.6029 -0.3459 24 1 -0.5388 -5.7214 0.0097 25 1 4.0287 -5.3233 -0.8277 26 1 7.4023 -2.5077 1.1750 27 1 6.2617 -1.4605 2.0531 28 1 7.5863 -2.7923 3.5569 29 1 5.9967 -3.2731 3.6503 30 1 3.6727 -1.9909 1.8004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162297348.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:27 Heat of formation + Delta-G solvation = 90.054736 kcal Electronic energy + Delta-G solvation = -17134.661739 eV Core-core repulsion = 14351.232161 eV Total energy + Delta-G solvation = -2783.429578 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.08191 -40.83638 -36.21330 -36.08457 -34.67962 -33.67232 -31.03048 -30.42131 -28.19688 -25.83897 -24.98895 -23.91788 -22.17953 -20.88841 -19.70264 -19.07252 -18.13983 -17.03271 -16.82080 -16.10952 -15.96909 -15.59087 -15.32169 -14.98239 -14.66444 -14.51357 -14.13475 -13.79702 -13.42591 -13.10469 -12.95812 -12.60175 -12.06048 -11.97338 -11.71632 -11.42854 -11.00628 -10.86047 -9.76874 -9.58582 -9.52627 -9.20915 -8.60605 -6.83419 0.21174 0.75699 1.35503 1.39985 1.44821 1.51701 1.96325 2.09869 2.13437 2.60056 3.51249 3.64199 3.83187 3.95226 4.02024 4.09540 4.31727 4.40389 4.49358 4.73176 4.76766 4.84388 4.94598 4.98252 5.45753 5.57256 5.81931 5.94287 6.07898 6.26700 6.43555 6.65382 6.73112 6.97959 7.22264 7.64940 8.10698 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.016701 B = 0.010527 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.179269 B = 2659.092071 C = 4080.775351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.250 1.250 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.417 4.417 8 H 0.102 0.898 9 C 0.192 3.808 10 N -0.473 5.473 11 C 0.086 3.914 12 C -0.094 4.094 13 N -0.436 5.436 14 C 0.103 3.897 15 N -0.365 5.365 16 C 0.175 3.825 17 N -0.499 5.499 18 C -0.020 4.020 19 C 0.157 3.843 20 N -0.851 5.851 21 C -0.033 4.033 22 H 0.292 0.708 23 H 0.176 0.824 24 H 0.176 0.824 25 H 0.208 0.792 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.355 0.645 29 H 0.342 0.658 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 2.307 2.808 5.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.199 4.199 3 Si 0.804 3.196 4 H -0.173 1.173 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.447 4.447 8 H 0.120 0.880 9 C 0.066 3.934 10 N -0.190 5.190 11 C -0.085 4.085 12 C -0.256 4.256 13 N -0.151 5.151 14 C -0.132 4.132 15 N -0.042 5.042 16 C -0.107 4.107 17 N -0.218 5.218 18 C -0.149 4.149 19 C 0.026 3.974 20 N -0.383 5.383 21 C -0.168 4.168 22 H 0.104 0.896 23 H 0.193 0.807 24 H 0.193 0.807 25 H 0.224 0.776 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.170 0.830 29 H 0.154 0.846 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.167 1.471 2.088 4.888 hybrid contribution -1.237 1.479 0.483 1.988 sum 2.930 2.951 2.571 4.889 Atomic orbital electron populations 1.70064 1.09017 1.30744 1.25225 1.27076 0.95806 1.04705 0.92357 0.85077 0.79720 0.75300 0.79519 1.17313 1.18810 1.18060 1.20216 0.95635 0.89709 1.39140 0.88020 1.19363 0.89815 0.92291 0.91904 1.69603 1.06592 1.26462 1.16357 1.24208 1.01975 0.89424 0.92861 1.23155 0.88839 0.99994 1.13639 1.67123 1.10342 1.28932 1.08680 1.18827 0.83531 0.92033 1.18817 1.42222 1.04242 1.24808 1.32925 1.25380 0.83486 0.98786 1.03040 1.70099 1.22211 1.15140 1.14390 1.20855 0.93443 0.97962 1.02650 1.19835 0.93533 0.93315 0.90749 1.58542 1.12345 1.59317 1.08137 1.22668 0.92110 1.00603 1.01444 0.89631 0.80729 0.80672 0.77551 0.89968 0.92529 0.82983 0.84561 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -34.78 11.54 21.85 0.25 -34.53 16 2 C 0.03 1.19 5.49 85.32 0.47 1.65 16 3 Si 0.99 33.58 29.56 68.60 2.03 35.61 16 4 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 5 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 6 H -0.26 -8.23 7.11 99.48 0.71 -7.53 16 7 C -0.42 -20.44 7.92 23.40 0.19 -20.26 16 8 H 0.10 4.82 5.43 -2.91 -0.02 4.80 16 9 C 0.19 9.89 6.52 40.31 0.26 10.15 16 10 N -0.47 -23.86 8.12 -188.14 -1.53 -25.39 16 11 C 0.09 3.65 11.21 84.90 0.95 4.61 16 12 C -0.09 -3.84 11.22 84.81 0.95 -2.88 16 13 N -0.44 -20.35 10.38 -190.28 -1.98 -22.33 16 14 C 0.10 5.06 7.07 133.64 0.94 6.01 16 15 N -0.36 -16.59 2.77 -353.91 -0.98 -17.57 16 16 C 0.17 7.48 12.45 179.94 2.24 9.72 16 17 N -0.50 -21.01 11.24 -187.58 -2.11 -23.11 16 18 C -0.02 -0.76 6.59 41.36 0.27 -0.48 16 19 C 0.16 4.57 7.32 85.56 0.63 5.20 16 20 N -0.85 -22.02 9.61 -190.01 -1.83 -23.85 16 21 C -0.03 -1.38 8.83 83.01 0.73 -0.65 16 22 H 0.29 12.32 8.29 -92.70 -0.77 11.55 16 23 H 0.18 5.88 8.06 -2.91 -0.02 5.86 16 24 H 0.18 5.66 8.06 -2.91 -0.02 5.64 16 25 H 0.21 7.93 8.06 -2.91 -0.02 7.90 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.36 6.77 9.08 -89.70 -0.81 5.96 16 29 H 0.34 8.70 8.99 -89.69 -0.81 7.89 16 30 H 0.17 6.84 7.27 -2.91 -0.02 6.82 16 Total: -1.00 -62.26 268.69 1.09 -61.18 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: -0.41 Total: 36.93 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 7.64 Total: 13.06 kcal Atomic # 7 Polarization: -138.61 SS G_CDS: -8.17 Total: -146.78 kcal Atomic # 14 Polarization: 33.58 SS G_CDS: 2.03 Total: 35.61 kcal Total: -62.26 1.09 -61.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162297348.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.230 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds