Wall clock time and date at job start Sun Mar 29 2020 23:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86805 * 120.00065 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72656 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72565 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72490 * 3 2 1 7 7 C 1.40085 * 120.00019 * 179.72670 * 2 1 3 8 8 H 1.08000 * 119.99529 * 179.97438 * 7 2 1 9 9 C 1.41274 * 119.99831 * 359.97438 * 7 2 1 10 10 N 1.33551 * 119.19676 * 359.73620 * 9 7 2 11 11 C 1.31717 * 120.77213 * 179.71585 * 10 9 7 12 12 C 1.39871 * 119.15995 * 0.53849 * 11 10 9 13 13 N 1.39658 * 120.73652 * 179.70586 * 12 11 10 14 14 C 1.35960 * 126.47771 * 179.71262 * 13 12 11 15 15 N 1.30498 * 108.54699 * 179.86373 * 14 13 12 16 16 C 1.34174 * 109.36014 * 0.40682 * 15 14 13 17 17 C 1.50705 * 125.88707 * 179.71011 * 16 15 14 18 18 N 1.46904 * 109.47055 * 275.04067 * 17 16 15 19 19 C 1.34637 * 108.22215 * 359.74550 * 16 15 14 20 20 C 1.39862 * 118.52381 * 359.73269 * 12 11 10 21 21 N 1.31723 * 119.16081 * 359.97438 * 20 12 11 22 22 H 0.97000 * 120.00353 * 0.27117 * 1 2 3 23 23 H 1.07999 * 120.42087 * 180.28870 * 11 10 9 24 24 H 1.07996 * 125.73020 * 0.02562 * 14 13 12 25 25 H 1.08995 * 109.47002 * 35.04093 * 17 16 15 26 26 H 1.09000 * 109.46850 * 155.04772 * 17 16 15 27 27 H 1.00900 * 110.99899 * 56.04840 * 18 17 16 28 28 H 1.00895 * 111.00129 * 180.02562 * 18 17 16 29 29 H 1.07996 * 126.58151 * 180.02562 * 19 16 15 30 30 H 1.07994 * 120.42185 * 180.02562 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4942 2.0431 -1.4001 5 1 1.4355 2.6543 0.6942 6 1 3.5355 1.4419 0.7058 7 6 2.0073 -1.2132 0.0058 8 1 3.0873 -1.2131 0.0054 9 6 1.3009 -2.4366 0.0122 10 7 -0.0344 -2.4178 0.0180 11 6 -0.7242 -3.5399 0.0184 12 6 -0.0405 -4.7602 0.0242 13 7 -0.7388 -5.9696 0.0309 14 6 -0.1963 -7.2162 0.0315 15 7 -1.1650 -8.0906 0.0417 16 6 -2.3433 -7.4489 0.0390 17 6 -3.7031 -8.0986 0.0421 18 7 -4.0926 -8.4257 -1.3361 19 6 -2.1015 -6.1244 0.0323 20 6 1.3580 -4.7422 0.0236 21 7 1.9850 -3.5837 0.0171 22 1 -0.4851 0.8400 -0.0040 23 1 -1.8039 -3.5181 0.0184 24 1 0.8593 -7.4447 0.0271 25 1 -3.6681 -9.0118 0.6361 26 1 -4.4326 -7.4127 0.4726 27 1 -3.3987 -9.0090 -1.7793 28 1 -5.0018 -8.8624 -1.3610 29 1 -2.8389 -5.3355 0.0291 30 1 1.9168 -5.6663 0.0275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162302549.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:50 Heat of formation + Delta-G solvation = 107.657494 kcal Electronic energy + Delta-G solvation = -16487.649999 eV Core-core repulsion = 13704.983734 eV Total energy + Delta-G solvation = -2782.666265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.67363 -39.12405 -35.06659 -34.13712 -32.93956 -32.18916 -29.59975 -29.04413 -26.38694 -24.66445 -23.26502 -22.40017 -20.65032 -19.45942 -18.15521 -17.41918 -16.18313 -15.75040 -15.23088 -15.06202 -14.73560 -14.30422 -13.78567 -13.69995 -13.09077 -12.95571 -12.74286 -12.25474 -11.79211 -11.56228 -11.49169 -11.02846 -10.54634 -10.37198 -10.02075 -9.66510 -9.56189 -9.42752 -8.61429 -8.12417 -7.71118 -7.67447 -6.89173 -5.01113 1.77188 2.54802 2.80506 2.89431 2.94241 3.09438 3.45434 3.49743 3.65726 4.34850 4.80236 5.00930 5.26418 5.32365 5.46049 5.52055 5.53851 5.65418 5.78509 5.83264 5.91967 6.27977 6.60449 6.71874 6.96883 7.01193 7.17482 7.26393 7.53747 7.79900 7.92931 8.07399 8.20308 8.51004 8.70482 9.74421 9.88760 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.053401 B = 0.004797 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.212471 B = 5835.481856 C = 6274.536041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.058 3.942 3 Si 0.926 3.074 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.369 4.369 8 H 0.100 0.900 9 C 0.370 3.630 10 N -0.489 5.489 11 C 0.175 3.825 12 C -0.170 4.170 13 N -0.348 5.348 14 C 0.161 3.839 15 N -0.497 5.497 16 C -0.020 4.020 17 C 0.155 3.845 18 N -0.847 5.847 19 C -0.038 4.038 20 C 0.179 3.821 21 N -0.574 5.574 22 H 0.282 0.718 23 H 0.136 0.864 24 H 0.198 0.802 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.344 0.656 28 H 0.337 0.663 29 H 0.167 0.833 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 -5.621 0.167 6.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.171 4.171 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.402 4.402 8 H 0.118 0.882 9 C 0.138 3.862 10 N -0.205 5.205 11 C -0.003 4.003 12 C -0.272 4.272 13 N -0.022 5.022 14 C -0.120 4.120 15 N -0.217 5.217 16 C -0.150 4.150 17 C 0.024 3.976 18 N -0.377 5.377 19 C -0.175 4.175 20 C 0.003 3.997 21 N -0.292 5.292 22 H 0.094 0.906 23 H 0.153 0.847 24 H 0.215 0.785 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.185 0.815 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.400 -4.351 0.071 5.523 hybrid contribution -0.288 -0.312 0.306 0.523 sum -3.688 -4.663 0.377 5.957 Atomic orbital electron populations 1.70092 1.07549 1.29166 1.24732 1.26255 0.95199 1.01978 0.93642 0.86003 0.80359 0.79063 0.79734 1.18880 1.19652 1.17989 1.19568 0.95290 0.87591 1.37790 0.88164 1.19978 0.85805 0.90953 0.89428 1.69446 1.08304 1.25097 1.17704 1.22825 0.99485 0.86670 0.91355 1.19139 0.93941 0.85056 1.29078 1.42563 1.05745 1.05879 1.47976 1.24817 0.99670 0.78956 1.08548 1.70019 0.98076 1.32805 1.20769 1.20219 0.93744 0.90247 1.10837 1.19780 0.90706 0.97867 0.89275 1.58715 1.06973 1.53791 1.18224 1.22295 0.84503 0.98564 1.12121 1.22351 0.88542 0.96895 0.91906 1.68738 1.39854 0.97850 1.22782 0.90612 0.84651 0.78502 0.94784 0.90352 0.84372 0.85129 0.81526 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.88 11.41 55.55 0.63 -16.25 16 2 C 0.06 1.35 5.50 -17.34 -0.10 1.26 16 3 Si 0.93 16.93 29.56 -169.99 -5.02 11.90 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 7 C -0.37 -9.33 9.36 -37.74 -0.35 -9.68 16 8 H 0.10 2.40 7.85 -52.49 -0.41 1.99 16 9 C 0.37 9.75 7.36 -158.25 -1.16 8.59 16 10 N -0.49 -12.65 7.85 -12.52 -0.10 -12.75 16 11 C 0.18 3.97 10.74 -16.99 -0.18 3.79 16 12 C -0.17 -3.61 6.69 -83.07 -0.56 -4.17 16 13 N -0.35 -6.65 2.98 -61.65 -0.18 -6.83 16 14 C 0.16 2.85 11.95 -89.53 -1.07 1.78 16 15 N -0.50 -9.02 11.25 -10.65 -0.12 -9.14 16 16 C -0.02 -0.34 6.59 -82.84 -0.55 -0.89 16 17 C 0.15 2.07 7.32 -4.97 -0.04 2.03 16 18 N -0.85 -10.38 9.61 -11.40 -0.11 -10.49 16 19 C -0.04 -0.67 10.79 -16.45 -0.18 -0.85 16 20 C 0.18 3.85 10.74 -16.99 -0.18 3.67 16 21 N -0.57 -14.15 10.34 -12.52 -0.13 -14.28 16 22 H 0.28 6.10 8.29 -40.82 -0.34 5.77 16 23 H 0.14 2.71 6.94 -52.49 -0.36 2.35 16 24 H 0.20 2.86 7.14 -52.49 -0.37 2.48 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.34 4.31 8.99 -39.29 -0.35 3.96 16 28 H 0.34 3.12 9.08 -39.29 -0.36 2.76 16 29 H 0.17 2.63 7.22 -52.49 -0.38 2.26 16 30 H 0.14 2.42 6.90 -52.49 -0.36 2.05 16 LS Contribution 270.03 15.07 4.07 4.07 Total: -1.00 -29.19 270.03 -7.91 -37.10 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -2.58 Total: 11.11 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -4.36 Total: 5.55 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -0.01 Total: -69.74 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.02 Total: 11.90 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.19 -7.91 -37.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162302549.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.759 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds