Wall clock time and date at job start Sun Mar 29 2020 23:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30715 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46918 * 239.99918 * 3 2 1 5 5 H 1.48500 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46999 * 120.00078 * 3 2 1 7 7 C 1.40125 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.40956 * 120.00076 * 359.97438 * 7 2 1 10 10 N 1.33937 * 120.26150 * 354.79756 * 9 7 2 11 11 C 1.31671 * 119.87489 * 179.97438 * 10 9 7 12 12 C 1.39018 * 120.42290 * 0.27458 * 11 10 9 13 13 N 1.32214 * 120.53202 * 359.43195 * 12 11 10 14 14 C 1.32451 * 120.11128 * 0.56288 * 13 12 11 15 15 N 1.39045 * 120.21254 * 179.68708 * 14 13 12 16 16 N 1.40092 * 126.11320 * 228.32336 * 15 14 13 17 17 C 1.30811 * 108.25848 * 179.97438 * 16 15 14 18 18 C 1.40047 * 108.38535 * 0.02562 * 17 16 15 19 19 C 1.35219 * 107.97218 * 359.75253 * 18 17 16 20 20 C 1.50704 * 126.19916 * 180.28374 * 19 18 17 21 21 N 1.46903 * 109.47286 * 95.12947 * 20 19 18 22 22 H 0.97001 * 120.00084 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.79198 * 179.97438 * 11 10 9 24 24 H 1.07992 * 119.73704 * 179.72532 * 12 11 10 25 25 H 1.08001 * 125.80555 * 180.02562 * 17 16 15 26 26 H 1.07998 * 126.01212 * 179.97438 * 18 17 16 27 27 H 1.08999 * 109.47315 * 215.12603 * 20 19 18 28 28 H 1.08999 * 109.47215 * 335.12878 * 20 19 18 29 29 H 1.00895 * 111.00066 * 179.97438 * 21 20 19 30 30 H 1.00903 * 110.99657 * 303.95932 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0949 1.6964 -1.2125 5 1 1.2761 2.7465 0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0078 -1.2135 -0.0005 8 1 3.0878 -1.2135 -0.0010 9 6 1.3030 -2.4342 -0.0005 10 7 -0.0322 -2.4428 0.1049 11 6 -0.6829 -3.5875 0.1036 12 6 0.0075 -4.7896 -0.0009 13 7 1.3250 -4.8000 -0.1116 14 6 2.0008 -3.6609 -0.1126 15 7 3.3869 -3.6698 -0.2223 16 7 4.2839 -2.9620 0.5883 17 6 5.4989 -3.2231 0.1800 18 6 5.4204 -4.1054 -0.9048 19 6 4.1143 -4.3713 -1.1326 20 6 3.5643 -5.2789 -2.2026 21 7 3.3357 -6.6166 -1.6402 22 1 -0.4850 0.8400 -0.0004 23 1 -1.7595 -3.5928 0.1890 24 1 -0.5370 -5.7221 0.0036 25 1 6.4079 -2.8259 0.6069 26 1 6.2561 -4.5059 -1.4593 27 1 2.6222 -4.8747 -2.5729 28 1 4.2781 -5.3470 -3.0235 29 1 2.9662 -7.2441 -2.3385 30 1 4.1811 -6.9865 -1.2320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162586511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:32 Heat of formation + Delta-G solvation = 134.691265 kcal Electronic energy + Delta-G solvation = -17435.679616 eV Core-core repulsion = 14654.185623 eV Total energy + Delta-G solvation = -2781.493993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62820 -38.77839 -34.50053 -34.14928 -32.86893 -31.49319 -29.51110 -28.70080 -26.12467 -24.49256 -23.04300 -22.20270 -20.28111 -19.25754 -17.72288 -16.93962 -16.24793 -15.36925 -15.07167 -14.40525 -14.24455 -13.87593 -13.80238 -13.16628 -12.83571 -12.77136 -12.57407 -12.17720 -11.61374 -11.40012 -11.23778 -10.78733 -10.41338 -10.01173 -9.82748 -9.62811 -9.38578 -8.85408 -8.34218 -8.11906 -7.70904 -7.40637 -6.67804 -4.77921 2.07779 2.63522 2.96392 2.98195 3.00603 3.12652 3.39108 3.45673 3.77666 4.51659 4.99179 5.19668 5.34380 5.51202 5.68128 5.86056 5.87576 6.01237 6.15617 6.30863 6.32882 6.56261 6.70002 6.84354 6.94206 7.34684 7.41475 7.46862 7.73975 7.90364 8.03706 8.35266 8.48785 8.61728 9.11538 9.66258 9.95423 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.010348 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.062766 B = 2705.270837 C = 3751.478716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.060 3.940 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.376 4.376 8 H 0.106 0.894 9 C 0.219 3.781 10 N -0.446 5.446 11 C 0.090 3.910 12 C -0.108 4.108 13 N -0.389 5.389 14 C 0.141 3.859 15 N -0.246 5.246 16 N -0.271 5.271 17 C 0.020 3.980 18 C -0.288 4.288 19 C 0.092 3.908 20 C 0.139 3.861 21 N -0.824 5.824 22 H 0.281 0.719 23 H 0.136 0.864 24 H 0.134 0.866 25 H 0.176 0.824 26 H 0.136 0.864 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.338 0.662 30 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 -4.022 -3.914 7.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.168 4.168 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.406 4.406 8 H 0.124 0.876 9 C 0.094 3.906 10 N -0.163 5.163 11 C -0.082 4.082 12 C -0.271 4.271 13 N -0.104 5.104 14 C -0.096 4.096 15 N -0.022 5.022 16 N -0.092 5.092 17 C -0.165 4.165 18 C -0.319 4.319 19 C -0.037 4.037 20 C 0.007 3.993 21 N -0.355 5.355 22 H 0.092 0.908 23 H 0.153 0.847 24 H 0.151 0.849 25 H 0.193 0.807 26 H 0.154 0.846 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.151 0.849 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.519 -2.798 -2.578 5.182 hybrid contribution 1.490 -0.176 -1.222 1.935 sum 5.009 -2.974 -3.800 6.955 Atomic orbital electron populations 1.70065 1.07536 1.29071 1.25181 1.26303 0.95063 1.01922 0.93489 0.86201 0.80123 0.79127 0.80591 1.18533 1.19839 1.18213 1.20023 0.95896 0.88775 1.35916 0.87642 1.19002 0.88811 0.91480 0.91354 1.69671 1.06328 1.24824 1.15467 1.23598 1.00251 0.90331 0.94030 1.22452 0.89252 0.98001 1.17415 1.67146 1.08819 1.28528 1.05873 1.18292 0.80097 0.91259 1.19907 1.44952 1.03380 1.32392 1.21442 1.77539 0.98421 1.17940 1.15327 1.23735 0.96038 0.99304 0.97413 1.20980 0.95041 1.10118 1.05769 1.21066 0.91289 0.96919 0.94433 1.20034 0.99608 0.88331 0.91284 1.58414 1.35824 1.02798 1.38416 0.90751 0.84672 0.84882 0.80748 0.84574 0.90307 0.94170 0.84891 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.89 11.50 55.56 0.64 -17.25 16 2 C 0.06 1.51 5.50 -17.32 -0.10 1.41 16 3 Si 0.92 18.52 29.56 -169.99 -5.03 13.50 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.38 -10.18 8.72 -37.85 -0.33 -10.51 16 8 H 0.11 2.83 5.72 -52.49 -0.30 2.53 16 9 C 0.22 6.07 6.55 -84.65 -0.55 5.51 16 10 N -0.45 -12.03 8.06 -10.82 -0.09 -12.11 16 11 C 0.09 2.10 11.22 -17.33 -0.19 1.91 16 12 C -0.11 -2.45 11.22 -17.10 -0.19 -2.64 16 13 N -0.39 -9.61 9.97 -11.49 -0.11 -9.73 16 14 C 0.14 3.68 6.84 -154.00 -1.05 2.63 16 15 N -0.25 -5.94 3.36 -7.87 -0.03 -5.96 16 16 N -0.27 -6.36 10.35 30.66 0.32 -6.04 16 17 C 0.02 0.38 12.02 -17.31 -0.21 0.17 16 18 C -0.29 -5.14 10.72 -39.98 -0.43 -5.57 16 19 C 0.09 1.88 6.40 -81.81 -0.52 1.35 16 20 C 0.14 2.37 6.56 -4.97 -0.03 2.34 16 21 N -0.82 -12.69 9.61 -11.40 -0.11 -12.80 16 22 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 23 H 0.14 2.63 8.06 -52.49 -0.42 2.21 16 24 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 25 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 26 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 27 H 0.08 1.52 7.99 -51.93 -0.41 1.11 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.34 4.22 9.08 -39.29 -0.36 3.86 16 30 H 0.34 4.69 8.99 -39.29 -0.35 4.33 16 LS Contribution 269.91 15.07 4.07 4.07 Total: -1.00 -31.54 269.91 -6.62 -38.16 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -2.67 Total: 11.57 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.61 Total: -3.40 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: 0.62 Total: -63.89 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.54 -6.62 -38.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162586511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.852 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds