Wall clock time and date at job start Sun Mar 29 2020 23:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30715 * 1 3 3 Si 1.86804 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46918 * 239.99918 * 3 2 1 5 5 H 1.48500 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46999 * 120.00078 * 3 2 1 7 7 C 1.40125 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.40956 * 120.00076 * 359.97438 * 7 2 1 10 10 N 1.33937 * 120.26150 * 354.79756 * 9 7 2 11 11 C 1.31671 * 119.87489 * 179.97438 * 10 9 7 12 12 C 1.39018 * 120.42290 * 0.27458 * 11 10 9 13 13 N 1.32214 * 120.53202 * 359.43195 * 12 11 10 14 14 C 1.32451 * 120.11128 * 0.56288 * 13 12 11 15 15 N 1.39045 * 120.21254 * 179.68708 * 14 13 12 16 16 N 1.40092 * 126.11320 * 228.32336 * 15 14 13 17 17 C 1.30811 * 108.25848 * 179.97438 * 16 15 14 18 18 C 1.40047 * 108.38535 * 0.02562 * 17 16 15 19 19 C 1.35219 * 107.97218 * 359.75253 * 18 17 16 20 20 C 1.50704 * 126.19916 * 180.28374 * 19 18 17 21 21 N 1.46903 * 109.47286 * 95.12947 * 20 19 18 22 22 H 0.97001 * 120.00084 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.79198 * 179.97438 * 11 10 9 24 24 H 1.07992 * 119.73704 * 179.72532 * 12 11 10 25 25 H 1.08001 * 125.80555 * 180.02562 * 17 16 15 26 26 H 1.07998 * 126.01212 * 179.97438 * 18 17 16 27 27 H 1.08999 * 109.47315 * 215.12603 * 20 19 18 28 28 H 1.08999 * 109.47215 * 335.12878 * 20 19 18 29 29 H 1.00895 * 111.00066 * 179.97438 * 21 20 19 30 30 H 1.00903 * 110.99657 * 303.95932 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0949 1.6964 -1.2125 5 1 1.2761 2.7465 0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0078 -1.2135 -0.0005 8 1 3.0878 -1.2135 -0.0010 9 6 1.3030 -2.4342 -0.0005 10 7 -0.0322 -2.4428 0.1049 11 6 -0.6829 -3.5875 0.1036 12 6 0.0075 -4.7896 -0.0009 13 7 1.3250 -4.8000 -0.1116 14 6 2.0008 -3.6609 -0.1126 15 7 3.3869 -3.6698 -0.2223 16 7 4.2839 -2.9620 0.5883 17 6 5.4989 -3.2231 0.1800 18 6 5.4204 -4.1054 -0.9048 19 6 4.1143 -4.3713 -1.1326 20 6 3.5643 -5.2789 -2.2026 21 7 3.3357 -6.6166 -1.6402 22 1 -0.4850 0.8400 -0.0004 23 1 -1.7595 -3.5928 0.1890 24 1 -0.5370 -5.7221 0.0036 25 1 6.4079 -2.8259 0.6069 26 1 6.2561 -4.5059 -1.4593 27 1 2.6222 -4.8747 -2.5729 28 1 4.2781 -5.3470 -3.0235 29 1 2.9662 -7.2441 -2.3385 30 1 4.1811 -6.9865 -1.2320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162586511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:31 Heat of formation + Delta-G solvation = 111.310822 kcal Electronic energy + Delta-G solvation = -17436.693468 eV Core-core repulsion = 14654.185623 eV Total energy + Delta-G solvation = -2782.507845 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.21552 -40.59864 -36.14503 -35.68114 -34.62872 -33.31414 -31.06584 -30.37402 -27.98756 -25.89620 -24.78072 -24.04261 -21.85320 -20.84821 -19.61869 -18.48936 -18.07361 -16.94469 -16.71871 -16.04854 -15.68270 -15.37226 -15.31694 -14.77040 -14.47285 -14.23207 -14.17555 -13.87449 -13.39495 -13.06873 -12.63620 -12.55625 -12.07121 -11.82081 -11.53443 -11.42778 -11.17174 -10.60068 -9.83298 -9.56404 -9.42807 -9.14357 -8.51072 -6.70350 0.30543 0.87596 1.30594 1.31552 1.44746 1.47683 1.77346 2.02911 2.11716 2.67022 3.60314 3.66921 3.88544 4.08338 4.10805 4.15906 4.33252 4.41542 4.59482 4.78082 4.83091 4.90023 5.01368 5.10907 5.32265 5.68713 5.90492 6.07975 6.14687 6.26490 6.50924 6.71055 6.79240 6.91781 7.28077 7.78146 8.16370 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.010348 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.062766 B = 2705.270837 C = 3751.478716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.020 3.980 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.255 1.255 6 H -0.259 1.259 7 C -0.410 4.410 8 H 0.098 0.902 9 C 0.189 3.811 10 N -0.478 5.478 11 C 0.081 3.919 12 C -0.104 4.104 13 N -0.399 5.399 14 C 0.127 3.873 15 N -0.274 5.274 16 N -0.326 5.326 17 C 0.029 3.971 18 C -0.274 4.274 19 C 0.073 3.927 20 C 0.146 3.854 21 N -0.836 5.836 22 H 0.290 0.710 23 H 0.171 0.829 24 H 0.171 0.829 25 H 0.217 0.783 26 H 0.180 0.820 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.354 0.646 30 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 -4.479 -4.553 9.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.205 4.205 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.179 1.179 6 H -0.184 1.184 7 C -0.440 4.440 8 H 0.116 0.884 9 C 0.063 3.937 10 N -0.196 5.196 11 C -0.090 4.090 12 C -0.267 4.267 13 N -0.113 5.113 14 C -0.108 4.108 15 N -0.051 5.051 16 N -0.148 5.148 17 C -0.156 4.156 18 C -0.304 4.304 19 C -0.055 4.055 20 C 0.014 3.986 21 N -0.369 5.369 22 H 0.101 0.899 23 H 0.188 0.812 24 H 0.188 0.812 25 H 0.233 0.767 26 H 0.197 0.803 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.169 0.831 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.903 -3.296 -3.232 6.735 hybrid contribution 1.090 -0.222 -1.031 1.517 sum 5.994 -3.518 -4.263 8.153 Atomic orbital electron populations 1.70106 1.08829 1.30458 1.25845 1.27155 0.95908 1.04819 0.92597 0.85169 0.78906 0.74952 0.80313 1.18217 1.17859 1.18354 1.20188 0.95798 0.89910 1.38113 0.88376 1.19409 0.89559 0.92668 0.92085 1.69608 1.06586 1.26748 1.16670 1.24189 1.01916 0.89791 0.93108 1.23115 0.89063 0.99361 1.15113 1.67274 1.09573 1.28069 1.06421 1.18433 0.81584 0.91120 1.19660 1.44964 1.02789 1.34233 1.23144 1.77466 1.00078 1.19752 1.17465 1.24541 0.95971 0.98139 0.96946 1.21483 0.95176 1.08722 1.05024 1.21844 0.92202 0.96997 0.94449 1.19994 0.98892 0.88390 0.91304 1.58293 1.36698 1.02522 1.39357 0.89884 0.81179 0.81202 0.76681 0.80262 0.93400 0.90468 0.83087 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.35 11.50 21.86 0.25 -38.10 16 2 C 0.02 1.01 5.50 85.32 0.47 1.48 16 3 Si 0.99 38.42 29.56 68.60 2.03 40.45 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.41 -23.02 8.72 23.39 0.20 -22.82 16 8 H 0.10 5.48 5.72 -2.91 -0.02 5.47 16 9 C 0.19 10.82 6.55 40.31 0.26 11.08 16 10 N -0.48 -26.48 8.06 -188.13 -1.52 -27.99 16 11 C 0.08 3.77 11.22 84.90 0.95 4.72 16 12 C -0.10 -4.63 11.22 84.82 0.95 -3.67 16 13 N -0.40 -19.77 9.97 -190.28 -1.90 -21.67 16 14 C 0.13 6.83 6.84 133.64 0.91 7.74 16 15 N -0.27 -13.40 3.36 -178.80 -0.60 -14.00 16 16 N -0.33 -15.41 10.35 -56.92 -0.59 -16.00 16 17 C 0.03 1.05 12.02 85.28 1.03 2.07 16 18 C -0.27 -9.01 10.72 22.01 0.24 -8.77 16 19 C 0.07 2.88 6.40 41.22 0.26 3.14 16 20 C 0.15 4.78 6.56 85.56 0.56 5.34 16 21 N -0.84 -24.28 9.61 -190.00 -1.83 -26.10 16 22 H 0.29 13.48 8.29 -92.71 -0.77 12.72 16 23 H 0.17 6.42 8.06 -2.91 -0.02 6.40 16 24 H 0.17 6.15 8.06 -2.91 -0.02 6.13 16 25 H 0.22 5.54 8.06 -2.91 -0.02 5.52 16 26 H 0.18 4.21 8.06 -2.91 -0.02 4.19 16 27 H 0.05 1.85 7.99 -2.39 -0.02 1.83 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.35 8.15 9.08 -89.70 -0.81 7.34 16 30 H 0.35 8.86 8.99 -89.69 -0.81 8.06 16 Total: -1.00 -71.50 269.91 1.28 -70.22 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.42 Total: 32.87 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 5.84 Total: 0.33 kcal Atomic # 7 Polarization: -137.69 SS G_CDS: -6.18 Total: -143.87 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -71.50 1.28 -70.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162586511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.535 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds