Wall clock time and date at job start Sun Mar 29 2020 23:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35300 * 117.00061 * 2 1 4 4 N 1.32401 * 120.89031 * 0.02562 * 3 2 1 5 5 C 1.32395 * 121.50469 * 180.02562 * 4 3 2 6 6 N 1.31176 * 122.96110 * 359.97084 * 5 4 3 7 7 C 1.34062 * 120.45587 * 0.02562 * 6 5 4 8 8 C 1.40292 * 121.82986 * 180.02562 * 7 6 5 9 9 C 1.36045 * 119.86057 * 179.97438 * 8 7 6 10 10 C 1.40043 * 120.95900 * 359.97438 * 9 8 7 11 11 N 1.39261 * 119.71678 * 180.02562 * 10 9 8 12 12 C 1.36821 * 120.00199 * 173.59572 * 11 10 9 13 13 H 1.08004 * 119.99845 * 5.25824 * 12 11 10 14 14 C 1.38773 * 120.00419 * 185.25600 * 12 11 10 15 15 N 1.31603 * 119.99650 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00401 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46883 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47352 * 119.99814 * 16 14 12 19 19 H 1.48498 * 109.47097 * 239.99801 * 16 14 12 20 20 C 1.38211 * 120.56656 * 0.04633 * 10 9 8 21 21 C 1.39890 * 119.32100 * 359.67590 * 20 10 9 22 22 H 1.08998 * 109.47475 * 59.99561 * 1 2 3 23 23 H 1.09001 * 109.47307 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46970 * 299.99602 * 1 2 3 25 25 H 1.08001 * 118.52247 * 179.97438 * 5 4 3 26 26 H 1.08003 * 120.06934 * 359.97438 * 8 7 6 27 27 H 1.07997 * 119.52067 * 180.02562 * 9 8 7 28 28 H 0.97000 * 119.99929 * 353.59569 * 11 10 9 29 29 H 0.97005 * 120.00221 * 180.02562 * 15 14 12 30 30 H 1.07998 * 120.33840 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2055 0.0000 4 7 1.3395 2.3270 0.0005 5 6 1.9279 3.5130 0.0000 6 7 3.2310 3.6632 -0.0004 7 6 4.0384 2.5930 -0.0009 8 6 5.4355 2.7202 -0.0009 9 6 6.2170 1.6066 -0.0009 10 6 5.6479 0.3270 -0.0004 11 7 6.4724 -0.7953 0.0002 12 6 5.9285 -2.0437 0.1328 13 1 4.8556 -2.1661 0.1517 14 6 6.7554 -3.1527 0.2430 15 7 8.0627 -3.0037 0.2195 16 14 6.0128 -4.8573 0.4235 17 1 4.5313 -4.7545 0.4215 18 1 6.4517 -5.7109 -0.7096 19 1 6.4650 -5.4613 1.7024 20 6 4.2749 0.1685 -0.0008 21 6 3.4545 1.3015 0.0051 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.3070 4.3967 0.0000 26 1 5.8897 3.7000 -0.0009 27 1 7.2920 1.7109 -0.0005 28 1 7.4323 -0.6919 -0.0935 29 1 8.6408 -3.7789 0.2961 30 1 3.8399 -0.8200 0.0000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183835.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:45 Heat of formation + Delta-G solvation = 11.899462 kcal Electronic energy + Delta-G solvation = -16829.827146 eV Core-core repulsion = 14010.715750 eV Total energy + Delta-G solvation = -2819.111396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09469 -39.76402 -38.93436 -36.45392 -34.16038 -33.43172 -32.15037 -29.59042 -28.36190 -26.97999 -24.92907 -24.34874 -22.85953 -20.01598 -19.60991 -19.26202 -18.66286 -17.09880 -16.93105 -16.39579 -16.12848 -15.48273 -15.23039 -15.18669 -14.94226 -14.47655 -14.08625 -13.95645 -13.42865 -12.94123 -12.88464 -12.64298 -12.63222 -12.13289 -12.04985 -11.90976 -11.56313 -10.98543 -10.46441 -10.17408 -9.81075 -8.58900 -8.31569 -5.76649 -0.43024 0.06892 1.14520 1.41397 1.42858 1.54270 2.01334 2.21121 2.23377 3.02239 3.24989 3.35332 3.40324 3.50635 3.90639 3.96884 4.35079 4.43701 4.44148 4.59530 4.63816 4.74444 5.01219 5.17079 5.22571 5.30461 5.50547 5.58631 5.73589 5.97391 6.11610 6.37908 6.72724 7.33226 7.36934 7.51422 8.58140 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.007065 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.835127 B = 3962.361105 C = 5064.792969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.314 6.314 3 C 0.349 3.651 4 N -0.580 5.580 5 C 0.262 3.738 6 N -0.516 5.516 7 C 0.071 3.929 8 C -0.060 4.060 9 C -0.135 4.135 10 C 0.181 3.819 11 N -0.560 5.560 12 C -0.316 4.316 13 H 0.102 0.898 14 C -0.020 4.020 15 N -0.916 5.916 16 Si 0.994 3.006 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.275 1.275 20 C -0.235 4.235 21 C -0.099 4.099 22 H 0.063 0.937 23 H 0.122 0.878 24 H 0.062 0.938 25 H 0.222 0.778 26 H 0.160 0.840 27 H 0.148 0.852 28 H 0.398 0.602 29 H 0.279 0.721 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 5.886 -0.311 10.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.217 6.217 3 C 0.149 3.851 4 N -0.313 5.313 5 C -0.028 4.028 6 N -0.233 5.233 7 C -0.057 4.057 8 C -0.080 4.080 9 C -0.159 4.159 10 C 0.060 3.940 11 N -0.162 5.162 12 C -0.446 4.446 13 H 0.120 0.880 14 C -0.221 4.221 15 N -0.554 5.554 16 Si 0.818 3.182 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.201 1.201 20 C -0.265 4.265 21 C -0.105 4.105 22 H 0.082 0.918 23 H 0.141 0.859 24 H 0.081 0.919 25 H 0.238 0.762 26 H 0.178 0.822 27 H 0.166 0.834 28 H 0.233 0.767 29 H 0.089 0.911 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.738 5.999 -0.278 10.602 hybrid contribution 0.517 -1.612 0.045 1.693 sum -8.220 4.387 -0.234 9.321 Atomic orbital electron populations 1.23171 0.75255 1.04842 1.02756 1.86183 1.24886 1.24112 1.86471 1.20301 0.88700 0.85513 0.90591 1.67879 1.41633 0.98949 1.22815 1.24743 0.88834 0.93640 0.95533 1.68484 1.06062 1.32589 1.16178 1.18713 0.95176 0.86822 1.05019 1.20504 0.89669 0.99424 0.98421 1.20767 1.01021 0.89973 1.04131 1.18144 0.90772 0.87616 0.97459 1.41047 1.07865 1.03177 1.64065 1.20066 0.94373 0.83354 1.46759 0.88001 1.26152 0.95555 1.03783 0.96614 1.69767 1.03667 1.33250 1.48712 0.84820 0.78781 0.76585 0.78062 1.18509 1.19988 1.20092 1.19984 0.91556 0.96925 1.18026 1.18508 0.91243 0.95956 1.04760 0.91843 0.85942 0.91889 0.76176 0.82209 0.83429 0.76680 0.91139 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.42 113.37 1.18 2.02 16 2 O -0.31 -11.21 9.85 -85.86 -0.85 -12.05 16 3 C 0.35 13.46 7.57 85.40 0.65 14.11 16 4 N -0.58 -19.97 9.37 -311.96 -2.92 -22.90 16 5 C 0.26 8.31 12.22 180.89 2.21 10.52 16 6 N -0.52 -18.33 10.44 -193.75 -2.02 -20.36 16 7 C 0.07 2.75 6.62 40.17 0.27 3.01 16 8 C -0.06 -2.05 9.98 22.26 0.22 -1.82 16 9 C -0.14 -4.85 9.79 22.20 0.22 -4.63 16 10 C 0.18 7.84 6.61 38.39 0.25 8.09 16 11 N -0.56 -26.56 5.42 -184.27 -1.00 -27.56 16 12 C -0.32 -15.97 9.54 84.04 0.80 -15.16 16 13 H 0.10 5.14 5.68 -2.91 -0.02 5.12 16 14 C -0.02 -1.01 5.50 84.86 0.47 -0.54 16 15 N -0.92 -47.35 13.06 21.64 0.28 -47.06 16 16 Si 0.99 39.68 29.55 68.60 2.03 41.71 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 20 C -0.23 -10.49 8.89 22.66 0.20 -10.29 16 21 C -0.10 -4.13 5.75 -21.22 -0.12 -4.25 16 22 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 23 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.06 1.48 8.12 -2.38 -0.02 1.46 16 25 H 0.22 4.94 8.06 -2.91 -0.02 4.92 16 26 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 28 H 0.40 18.77 7.91 -92.71 -0.73 18.04 16 29 H 0.28 13.56 8.31 -92.70 -0.77 12.78 16 30 H 0.11 5.31 5.61 -2.91 -0.02 5.30 16 Total: -1.00 -58.88 267.98 2.32 -56.57 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.46 Total: 30.60 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 6.35 Total: 1.06 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.66 Total: -117.87 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.85 Total: -12.05 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -58.88 2.32 -56.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183835.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.465 kcal (2) G-P(sol) polarization free energy of solvation -58.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds