Wall clock time and date at job start Sun Mar 29 2020 22:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86804 * 119.99746 * 2 1 4 4 H 1.48499 * 109.46888 * 239.99934 * 3 2 1 5 5 H 1.48498 * 109.46980 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47151 * 120.00062 * 3 2 1 7 7 C 1.38839 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 179.97438 * 7 2 1 9 9 N 1.36755 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.38439 * 119.99989 * 179.97438 * 9 7 2 11 11 C 1.39086 * 120.09237 * 0.46556 * 10 9 7 12 12 C 1.37837 * 120.47937 * 180.02562 * 11 10 9 13 13 C 1.39654 * 120.60736 * 359.72882 * 12 11 10 14 14 C 1.47162 * 120.11221 * 180.02562 * 13 12 11 15 15 N 1.34781 * 119.99934 * 0.02562 * 14 13 12 16 16 O 1.21648 * 120.00342 * 180.02562 * 14 13 12 17 17 C 1.40725 * 119.77696 * 0.02562 * 13 12 11 18 18 N 1.37106 * 133.36101 * 179.97438 * 17 13 12 19 19 H 0.97000 * 125.02870 * 0.05245 * 18 17 13 20 20 C 1.36900 * 109.94448 * 180.02562 * 18 17 13 21 21 C 1.34330 * 109.78823 * 0.02562 * 20 18 17 22 22 C 1.40335 * 119.33860 * 0.02562 * 17 13 12 23 23 H 0.97003 * 120.00454 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00122 * 0.02562 * 9 7 2 25 25 H 1.08003 * 119.75920 * 359.75079 * 11 10 9 26 26 H 1.07994 * 119.69897 * 179.75433 * 12 11 10 27 27 H 0.96992 * 120.00050 * 0.02562 * 15 14 13 28 28 H 0.97001 * 119.99540 * 180.02562 * 15 14 13 29 29 H 1.08005 * 125.10918 * 179.97438 * 20 18 17 30 30 H 1.07996 * 126.56051 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6965 1.2125 7 6 2.0097 -1.2023 0.0005 8 1 3.0896 -1.2023 0.0001 9 7 1.3259 -2.3867 0.0005 10 6 2.0181 -3.5856 0.0005 11 6 3.4089 -3.5878 0.0103 12 6 4.1062 -4.7768 0.0099 13 6 3.4290 -5.9982 0.0053 14 6 4.1844 -7.2612 0.0054 15 7 5.5320 -7.2404 0.0105 16 8 3.5925 -8.3240 0.0009 17 6 2.0219 -6.0172 0.0005 18 7 1.0941 -7.0266 -0.0049 19 1 1.3021 -7.9740 -0.0057 20 6 -0.1694 -6.4995 -0.0085 21 6 -0.1024 -5.1579 -0.0061 22 6 1.3179 -4.8032 -0.0001 23 1 -0.4851 0.8400 -0.0004 24 1 0.3559 -2.3867 -0.0002 25 1 3.9465 -2.6511 0.0138 26 1 5.1860 -4.7639 0.0135 27 1 6.0040 -6.3931 0.0144 28 1 6.0299 -8.0729 0.0102 29 1 -1.0828 -7.0758 -0.0134 30 1 -0.9368 -4.4722 -0.0075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:59 Heat of formation + Delta-G solvation = 10.959383 kcal Electronic energy + Delta-G solvation = -16845.735986 eV Core-core repulsion = 14026.583825 eV Total energy + Delta-G solvation = -2819.152161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40434 -38.35965 -37.04583 -34.59511 -33.02613 -32.11991 -29.97940 -28.34496 -27.35891 -25.09035 -22.38990 -21.08367 -20.49939 -19.47209 -18.08164 -17.59861 -16.65807 -16.01158 -15.44065 -14.95289 -14.30320 -14.17275 -14.15344 -13.42241 -13.30540 -12.70433 -12.33442 -12.04709 -12.02048 -11.78293 -11.23995 -11.16288 -11.04228 -10.57975 -10.10953 -9.98532 -9.24282 -9.22236 -9.07416 -8.10503 -7.43868 -6.89044 -6.41173 -3.97592 1.84901 2.73908 3.01771 3.02493 3.04425 3.26533 3.82307 3.88010 4.05255 4.22834 4.65369 5.01961 5.13991 5.56078 5.72091 5.82588 6.07430 6.16937 6.40874 6.56150 6.75940 6.83581 6.98730 7.23757 7.32989 7.33758 7.47388 7.57251 7.66475 7.94313 8.12690 8.44115 8.45510 8.94651 9.04296 9.21745 10.25167 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.006442 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.613175 B = 4345.420241 C = 5257.187302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.027 3.973 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.510 5.510 10 C 0.259 3.741 11 C -0.272 4.272 12 C 0.012 3.988 13 C -0.316 4.316 14 C 0.577 3.423 15 N -0.867 5.867 16 O -0.596 6.596 17 C 0.212 3.788 18 N -0.579 5.579 19 H 0.416 0.584 20 C -0.018 4.018 21 C -0.173 4.173 22 C -0.218 4.218 23 H 0.283 0.717 24 H 0.404 0.596 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.396 0.604 28 H 0.391 0.609 29 H 0.155 0.845 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -4.991 0.009 6.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.130 0.870 9 N -0.103 5.103 10 C 0.128 3.872 11 C -0.297 4.297 12 C -0.010 4.010 13 C -0.327 4.327 14 C 0.372 3.628 15 N -0.429 5.429 16 O -0.480 6.480 17 C 0.097 3.903 18 N -0.181 5.181 19 H 0.254 0.746 20 C -0.143 4.143 21 C -0.199 4.199 22 C -0.227 4.227 23 H 0.093 0.907 24 H 0.239 0.761 25 H 0.137 0.863 26 H 0.123 0.877 27 H 0.225 0.775 28 H 0.220 0.780 29 H 0.173 0.827 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.977 -5.110 0.005 6.475 hybrid contribution 0.420 0.540 -0.003 0.684 sum 4.397 -4.570 0.002 6.342 Atomic orbital electron populations 1.69658 1.06320 1.29661 1.44940 1.25508 0.95805 1.00623 0.96072 0.85764 0.78942 0.79355 0.79515 1.19277 1.20437 1.19268 1.19967 0.93743 0.82470 1.47426 0.87009 1.41123 1.09023 1.02766 1.57390 1.17335 0.91251 0.83823 0.94757 1.19959 0.91731 0.97410 1.20567 1.20351 0.97005 0.90948 0.92669 1.17702 0.89279 0.91876 1.33842 1.18232 0.81617 0.89180 0.73805 1.43721 1.07510 1.11415 1.80258 1.90609 1.69533 1.33142 1.54693 1.17476 0.89052 0.86609 0.97123 1.41779 1.04470 1.08511 1.63321 0.74604 1.21406 0.87269 0.94174 1.11463 1.21429 0.94537 0.94043 1.09875 1.18325 0.92637 0.91191 1.20532 0.90728 0.76051 0.86334 0.87657 0.77453 0.78016 0.82714 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.63 13.05 55.49 0.72 -20.91 16 2 C 0.03 0.63 5.50 -17.45 -0.10 0.53 16 3 Si 0.94 18.23 29.55 -169.99 -5.02 13.21 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.31 -7.31 9.54 -15.13 -0.14 -7.45 16 8 H 0.11 2.52 5.65 -52.49 -0.30 2.22 16 9 N -0.51 -12.04 5.40 -9.48 -0.05 -12.09 16 10 C 0.26 5.84 6.64 -83.73 -0.56 5.29 16 11 C -0.27 -5.61 9.27 -39.41 -0.37 -5.97 16 12 C 0.01 0.22 9.50 -39.20 -0.37 -0.15 16 13 C -0.32 -6.29 5.89 -104.81 -0.62 -6.90 16 14 C 0.58 10.68 8.02 -12.64 -0.10 10.58 16 15 N -0.87 -11.57 8.82 30.37 0.27 -11.30 16 16 O -0.60 -12.50 15.97 5.24 0.08 -12.42 16 17 C 0.21 4.50 6.87 -83.78 -0.58 3.93 16 18 N -0.58 -10.95 5.87 -10.44 -0.06 -11.01 16 19 H 0.42 7.42 7.52 -40.82 -0.31 7.12 16 20 C -0.02 -0.30 11.83 -16.67 -0.20 -0.50 16 21 C -0.17 -3.37 10.84 -37.68 -0.41 -3.77 16 22 C -0.22 -4.78 6.27 -104.99 -0.66 -5.44 16 23 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 24 H 0.40 9.69 7.68 -40.82 -0.31 9.38 16 25 H 0.12 2.35 5.92 -52.48 -0.31 2.04 16 26 H 0.11 1.49 6.36 -52.49 -0.33 1.15 16 27 H 0.40 4.31 6.83 -40.82 -0.28 4.03 16 28 H 0.39 4.43 8.93 -40.82 -0.36 4.06 16 29 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 30 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 263.47 15.07 3.97 3.97 Total: -1.00 -28.67 263.47 -6.37 -35.04 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -2.18 Total: 25.38 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -4.09 Total: -9.87 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.88 Total: -55.31 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.67 -6.37 -35.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.999 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds