Wall clock time and date at job start Sun Mar 29 2020 22:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86804 * 119.99746 * 2 1 4 4 H 1.48499 * 109.46888 * 239.99934 * 3 2 1 5 5 H 1.48498 * 109.46980 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47151 * 120.00062 * 3 2 1 7 7 C 1.38839 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00210 * 179.97438 * 7 2 1 9 9 N 1.36755 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.38439 * 119.99989 * 179.97438 * 9 7 2 11 11 C 1.39086 * 120.09237 * 0.46556 * 10 9 7 12 12 C 1.37837 * 120.47937 * 180.02562 * 11 10 9 13 13 C 1.39654 * 120.60736 * 359.72882 * 12 11 10 14 14 C 1.47162 * 120.11221 * 180.02562 * 13 12 11 15 15 N 1.34781 * 119.99934 * 0.02562 * 14 13 12 16 16 O 1.21648 * 120.00342 * 180.02562 * 14 13 12 17 17 C 1.40725 * 119.77696 * 0.02562 * 13 12 11 18 18 N 1.37106 * 133.36101 * 179.97438 * 17 13 12 19 19 H 0.97000 * 125.02870 * 0.05245 * 18 17 13 20 20 C 1.36900 * 109.94448 * 180.02562 * 18 17 13 21 21 C 1.34330 * 109.78823 * 0.02562 * 20 18 17 22 22 C 1.40335 * 119.33860 * 0.02562 * 17 13 12 23 23 H 0.97003 * 120.00454 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00122 * 0.02562 * 9 7 2 25 25 H 1.08003 * 119.75920 * 359.75079 * 11 10 9 26 26 H 1.07994 * 119.69897 * 179.75433 * 12 11 10 27 27 H 0.96992 * 120.00050 * 0.02562 * 15 14 13 28 28 H 0.97001 * 119.99540 * 180.02562 * 15 14 13 29 29 H 1.08005 * 125.10918 * 179.97438 * 20 18 17 30 30 H 1.07996 * 126.56051 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6965 1.2125 7 6 2.0097 -1.2023 0.0005 8 1 3.0896 -1.2023 0.0001 9 7 1.3259 -2.3867 0.0005 10 6 2.0181 -3.5856 0.0005 11 6 3.4089 -3.5878 0.0103 12 6 4.1062 -4.7768 0.0099 13 6 3.4290 -5.9982 0.0053 14 6 4.1844 -7.2612 0.0054 15 7 5.5320 -7.2404 0.0105 16 8 3.5925 -8.3240 0.0009 17 6 2.0219 -6.0172 0.0005 18 7 1.0941 -7.0266 -0.0049 19 1 1.3021 -7.9740 -0.0057 20 6 -0.1694 -6.4995 -0.0085 21 6 -0.1024 -5.1579 -0.0061 22 6 1.3179 -4.8032 -0.0001 23 1 -0.4851 0.8400 -0.0004 24 1 0.3559 -2.3867 -0.0002 25 1 3.9465 -2.6511 0.0138 26 1 5.1860 -4.7639 0.0135 27 1 6.0040 -6.3931 0.0144 28 1 6.0299 -8.0729 0.0102 29 1 -1.0828 -7.0758 -0.0134 30 1 -0.9368 -4.4722 -0.0075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:58 Heat of formation + Delta-G solvation = -9.939019 kcal Electronic energy + Delta-G solvation = -16846.642208 eV Core-core repulsion = 14026.583825 eV Total energy + Delta-G solvation = -2820.058384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.95618 -39.83654 -38.66444 -36.19497 -34.45398 -33.70236 -31.55575 -29.91266 -28.93292 -26.77563 -23.93605 -22.69507 -21.95685 -20.96104 -19.68901 -19.15243 -18.11734 -17.41526 -16.97691 -16.49116 -15.96460 -15.71901 -15.69505 -14.87594 -14.83918 -14.26408 -13.87266 -13.66315 -13.61939 -13.23958 -12.84142 -12.69318 -12.65283 -12.10756 -11.74588 -11.57201 -10.77640 -10.74464 -10.48127 -9.71204 -9.00255 -8.58541 -8.03029 -5.76442 0.29523 1.11521 1.44678 1.50583 1.55563 1.78863 2.24537 2.33968 2.56984 2.96211 2.98128 3.34964 3.48581 4.15670 4.31195 4.39535 4.55126 4.61912 4.93891 5.01694 5.20222 5.24940 5.30688 5.67706 5.71090 5.87452 6.01297 6.08700 6.12481 6.50454 6.70925 6.71537 6.98322 7.37341 7.50028 7.59702 8.57969 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.030374 B = 0.006442 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.613175 B = 4345.420241 C = 5257.187302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.021 4.021 3 Si 1.003 2.997 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.327 4.327 8 H 0.118 0.882 9 N -0.539 5.539 10 C 0.249 3.751 11 C -0.290 4.290 12 C 0.023 3.977 13 C -0.315 4.315 14 C 0.576 3.424 15 N -0.839 5.839 16 O -0.621 6.621 17 C 0.183 3.817 18 N -0.577 5.577 19 H 0.422 0.578 20 C 0.012 3.988 21 C -0.206 4.206 22 C -0.242 4.242 23 H 0.281 0.719 24 H 0.395 0.605 25 H 0.123 0.877 26 H 0.153 0.847 27 H 0.412 0.588 28 H 0.406 0.594 29 H 0.203 0.797 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 -6.618 0.011 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.222 4.222 3 Si 0.826 3.174 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.456 4.456 8 H 0.135 0.865 9 N -0.135 5.135 10 C 0.122 3.878 11 C -0.315 4.315 12 C 0.002 3.998 13 C -0.325 4.325 14 C 0.368 3.632 15 N -0.403 5.403 16 O -0.506 6.506 17 C 0.069 3.931 18 N -0.180 5.180 19 H 0.262 0.738 20 C -0.113 4.113 21 C -0.231 4.231 22 C -0.251 4.251 23 H 0.090 0.910 24 H 0.228 0.772 25 H 0.141 0.859 26 H 0.171 0.829 27 H 0.244 0.756 28 H 0.238 0.762 29 H 0.219 0.781 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.938 -6.785 0.008 9.017 hybrid contribution -0.045 0.598 -0.004 0.599 sum 5.893 -6.187 0.004 8.545 Atomic orbital electron populations 1.69765 1.07664 1.29996 1.47868 1.26349 0.96499 1.03439 0.95952 0.84804 0.77598 0.75368 0.79653 1.18672 1.20653 1.18655 1.20243 0.94132 0.83053 1.48194 0.86463 1.41054 1.08411 1.03010 1.60991 1.17826 0.92325 0.83989 0.93652 1.20211 0.91239 0.98693 1.21369 1.20774 0.99288 0.89374 0.90342 1.18175 0.89321 0.93306 1.31747 1.18094 0.83109 0.88072 0.73898 1.43429 1.05755 1.13191 1.77887 1.90603 1.70555 1.33688 1.55802 1.17865 0.90147 0.87031 0.98091 1.41879 1.04646 1.08526 1.62905 0.73849 1.22103 0.88124 0.93741 1.07348 1.21664 0.93968 0.95404 1.12064 1.18735 0.94191 0.91423 1.20751 0.91004 0.77171 0.85895 0.82946 0.75613 0.76231 0.78063 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.70 13.05 21.65 0.28 -47.42 16 2 C -0.02 -1.04 5.50 84.88 0.47 -0.57 16 3 Si 1.00 38.18 29.55 68.60 2.03 40.21 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 7 C -0.33 -16.17 9.54 84.07 0.80 -15.37 16 8 H 0.12 5.42 5.65 -2.91 -0.02 5.40 16 9 N -0.54 -26.59 5.40 -183.91 -0.99 -27.58 16 10 C 0.25 11.44 6.64 38.84 0.26 11.70 16 11 C -0.29 -11.77 9.27 22.38 0.21 -11.56 16 12 C 0.02 0.80 9.50 22.52 0.21 1.01 16 13 C -0.31 -11.80 5.89 -19.98 -0.12 -11.91 16 14 C 0.58 19.46 8.02 86.59 0.69 20.15 16 15 N -0.84 -18.81 8.82 -176.05 -1.55 -20.36 16 16 O -0.62 -24.37 15.97 -4.18 -0.07 -24.44 16 17 C 0.18 7.56 6.87 39.44 0.27 7.83 16 18 N -0.58 -20.72 5.87 -186.93 -1.10 -21.82 16 19 H 0.42 14.12 7.52 -92.71 -0.70 13.42 16 20 C 0.01 0.40 11.83 83.01 0.98 1.39 16 21 C -0.21 -7.97 10.84 23.50 0.25 -7.72 16 22 C -0.24 -10.66 6.27 -20.10 -0.13 -10.78 16 23 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 24 H 0.39 20.17 7.68 -92.71 -0.71 19.46 16 25 H 0.12 4.82 5.92 -2.91 -0.02 4.80 16 26 H 0.15 3.60 6.36 -2.91 -0.02 3.58 16 27 H 0.41 6.89 6.83 -92.71 -0.63 6.26 16 28 H 0.41 7.42 8.93 -92.71 -0.83 6.60 16 29 H 0.20 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.14 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -63.76 263.47 0.89 -62.87 By element: Atomic # 1 Polarization: 55.99 SS G_CDS: -1.62 Total: 54.38 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 3.91 Total: -15.84 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.36 Total: -117.18 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.07 Total: -24.44 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -63.76 0.89 -62.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.929 kcal (2) G-P(sol) polarization free energy of solvation -63.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds