Wall clock time and date at job start Sun Mar 29 2020 23:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86796 * 119.99707 * 2 1 4 4 H 1.48501 * 109.47306 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46849 * 120.00315 * 3 2 1 6 6 H 1.48495 * 109.47458 * 239.99926 * 3 2 1 7 7 C 1.40022 * 120.00148 * 179.72647 * 2 1 3 8 8 H 1.08000 * 119.99884 * 358.15403 * 7 2 1 9 9 C 1.41362 * 120.00058 * 178.15148 * 7 2 1 10 10 C 1.40646 * 119.79187 * 182.32854 * 9 7 2 11 11 C 1.38261 * 119.10924 * 179.76666 * 10 9 7 12 12 C 1.38759 * 118.65457 * 0.49996 * 11 10 9 13 13 C 1.39499 * 119.50294 * 359.74228 * 12 11 10 14 14 N 1.39764 * 119.56716 * 179.97438 * 13 12 11 15 15 C 1.34828 * 126.85128 * 179.73501 * 14 13 12 16 16 N 1.30803 * 108.01669 * 179.83603 * 15 14 13 17 17 C 1.33307 * 109.84603 * 0.43653 * 16 15 14 18 18 C 1.50700 * 125.48596 * 179.76249 * 17 16 15 19 19 N 1.46902 * 109.47069 * 269.95723 * 18 17 16 20 20 N 1.30708 * 109.01918 * 359.72774 * 17 16 15 21 21 N 1.31884 * 120.87148 * 0.02562 * 13 12 11 22 22 H 0.97000 * 120.00017 * 174.36363 * 1 2 3 23 23 H 1.07997 * 120.44078 * 0.02562 * 10 9 7 24 24 H 1.07996 * 120.67483 * 180.21865 * 11 10 9 25 25 H 1.08000 * 120.25152 * 179.72030 * 12 11 10 26 26 H 1.07998 * 125.99030 * 359.97403 * 15 14 13 27 27 H 1.08992 * 109.47666 * 29.96068 * 18 17 16 28 28 H 1.08999 * 109.47053 * 149.96292 * 18 17 16 29 29 H 1.00905 * 110.99669 * 180.02562 * 19 18 17 30 30 H 1.00895 * 111.00170 * 303.95896 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2762 2.7465 0.0006 5 1 3.0951 1.6964 1.2125 6 1 3.0950 1.6965 -1.2124 7 6 2.0075 -1.2126 0.0058 8 1 1.4679 -2.1475 0.0404 9 6 3.4206 -1.2131 -0.0337 10 6 4.1180 -2.4337 -0.0773 11 6 5.4999 -2.4176 -0.1205 12 6 6.1517 -1.1927 -0.1087 13 6 5.4032 -0.0166 -0.0594 14 7 6.0584 1.2179 -0.0469 15 6 5.4849 2.4374 -0.0063 16 7 6.4382 3.3330 -0.0047 17 6 7.6260 2.7298 -0.0529 18 6 8.9615 3.4277 -0.0720 19 7 9.3576 3.6888 -1.4623 20 7 7.4455 1.4355 -0.0802 21 7 4.0854 -0.0541 -0.0234 22 1 -0.4850 -0.8360 -0.0825 23 1 3.5812 -3.3707 -0.0812 24 1 6.0607 -3.3397 -0.1580 25 1 7.2305 -1.1502 -0.1371 26 1 4.4243 2.6393 0.0224 27 1 8.8860 4.3716 0.4676 28 1 9.7091 2.7947 0.4059 29 1 10.2510 4.1562 -1.5020 30 1 9.3721 2.8355 -2.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168753705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:40 Heat of formation + Delta-G solvation = 99.488184 kcal Electronic energy + Delta-G solvation = -16978.327070 eV Core-core repulsion = 14195.306557 eV Total energy + Delta-G solvation = -2783.020513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.52846 -40.71894 -36.59351 -35.82817 -34.54769 -33.41103 -32.36649 -31.17785 -27.70895 -26.96930 -25.06726 -23.35090 -22.84088 -21.43130 -20.36004 -19.46752 -17.46099 -17.20410 -17.03202 -16.78281 -16.59555 -15.68494 -15.59390 -15.17844 -14.75881 -14.45912 -14.21524 -13.88050 -13.50298 -13.37349 -12.95702 -12.77641 -12.21968 -11.94912 -11.73430 -11.36366 -11.34478 -11.03554 -10.67770 -9.95081 -9.74700 -9.63064 -9.40031 -6.96268 -0.33648 0.53776 0.84665 0.97606 1.41127 1.53186 1.57856 1.87239 2.25073 2.50451 2.87602 3.24228 3.36492 3.49371 3.77022 4.00665 4.23915 4.35902 4.46916 4.51913 4.55878 4.66414 4.90819 5.19740 5.24715 5.29276 5.45544 5.49348 5.70964 5.90493 6.03251 6.20623 6.46233 6.54898 6.72415 7.22818 7.85351 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.028476 B = 0.007972 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.065372 B = 3511.316588 C = 4401.430216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.020 3.980 3 Si 1.167 2.833 4 H -0.317 1.317 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.491 4.491 8 H 0.085 0.915 9 C 0.257 3.743 10 C -0.259 4.259 11 C -0.019 4.019 12 C -0.272 4.272 13 C 0.370 3.630 14 N -0.327 5.327 15 C 0.261 3.739 16 N -0.537 5.537 17 C 0.223 3.777 18 C 0.166 3.834 19 N -0.848 5.848 20 N -0.310 5.310 21 N -0.613 5.613 22 H 0.288 0.712 23 H 0.134 0.866 24 H 0.165 0.835 25 H 0.138 0.862 26 H 0.210 0.790 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.369 0.631 30 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.309 1.810 -0.333 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.199 4.199 3 Si 1.003 2.997 4 H -0.250 1.250 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.523 4.523 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.281 4.281 11 C -0.043 4.043 12 C -0.298 4.298 13 C 0.143 3.857 14 N -0.111 5.111 15 C -0.035 4.035 16 N -0.264 5.264 17 C -0.060 4.060 18 C 0.033 3.967 19 N -0.383 5.383 20 N -0.138 5.138 21 N -0.338 5.338 22 H 0.099 0.901 23 H 0.152 0.848 24 H 0.183 0.817 25 H 0.156 0.844 26 H 0.226 0.774 27 H 0.132 0.868 28 H 0.095 0.905 29 H 0.186 0.814 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.388 4.331 -0.259 14.074 hybrid contribution 0.276 -3.348 0.112 3.361 sum 13.664 0.983 -0.147 13.700 Atomic orbital electron populations 1.70631 1.08331 1.33317 1.31609 1.28241 0.95644 1.07432 0.88631 0.81867 0.70245 0.69458 0.78171 1.24984 1.21763 1.21965 1.20849 0.90609 0.96434 1.44452 0.89670 1.18491 0.93471 0.86585 0.88205 1.21987 0.95027 0.97915 1.13184 1.21399 0.93524 0.97524 0.91814 1.21080 1.00350 0.90429 1.17934 1.17903 0.88487 0.82335 0.97020 1.47603 1.05065 1.05680 1.52742 1.26599 1.01164 0.80861 0.94900 1.70569 0.98354 1.32768 1.24736 1.25225 0.96880 0.87572 0.96344 1.20078 0.84934 0.99591 0.92114 1.58486 1.38629 1.30989 1.10210 1.77952 0.89642 1.18508 1.27724 1.65472 1.06835 1.30843 1.30664 0.90066 0.84775 0.81712 0.84413 0.77411 0.86761 0.90509 0.81429 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.25 13.65 21.84 0.30 -42.95 16 2 C 0.02 1.04 5.52 85.29 0.47 1.51 16 3 Si 1.17 55.87 22.01 68.60 1.51 57.38 16 4 H -0.32 -14.76 7.11 99.48 0.71 -14.05 16 5 H -0.29 -13.70 6.65 99.48 0.66 -13.04 16 6 H -0.29 -13.91 6.62 99.48 0.66 -13.25 16 7 C -0.49 -25.42 9.58 23.47 0.22 -25.19 16 8 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 9 C 0.26 12.54 6.43 40.23 0.26 12.80 16 10 C -0.26 -10.57 9.83 22.86 0.22 -10.35 16 11 C -0.02 -0.67 10.15 22.40 0.23 -0.44 16 12 C -0.27 -10.59 9.73 22.70 0.22 -10.37 16 13 C 0.37 16.67 7.57 133.04 1.01 17.68 16 14 N -0.33 -14.05 3.81 -196.01 -0.75 -14.80 16 15 C 0.26 11.01 11.87 180.24 2.14 13.15 16 16 N -0.54 -20.71 11.19 -191.49 -2.14 -22.85 16 17 C 0.22 7.46 7.65 138.61 1.06 8.52 16 18 C 0.17 3.62 7.41 85.56 0.63 4.25 16 19 N -0.85 -16.43 9.61 -190.01 -1.83 -18.26 16 20 N -0.31 -11.60 12.01 -51.30 -0.62 -12.22 16 21 N -0.61 -30.11 4.22 -186.09 -0.78 -30.90 16 22 H 0.29 14.53 8.73 -92.71 -0.81 13.72 16 23 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 24 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 25 H 0.14 4.86 7.72 -2.91 -0.02 4.83 16 26 H 0.21 8.82 3.55 -2.91 -0.01 8.81 16 27 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.37 4.49 9.08 -89.69 -0.81 3.67 16 30 H 0.35 6.85 8.98 -89.70 -0.81 6.05 16 Total: -1.00 -61.04 261.12 1.62 -59.43 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -0.54 Total: 13.61 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.47 Total: 11.56 kcal Atomic # 7 Polarization: -136.16 SS G_CDS: -5.82 Total: -141.97 kcal Atomic # 14 Polarization: 55.87 SS G_CDS: 1.51 Total: 57.38 kcal Total: -61.04 1.62 -59.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168753705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.913 kcal (2) G-P(sol) polarization free energy of solvation -61.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds