Wall clock time and date at job start Sun Mar 29 2020 23:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47055 * 299.99683 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99759 * 3 2 1 7 7 C 1.40028 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.41435 * 119.99610 * 0.27911 * 7 2 1 10 10 C 1.40489 * 119.79625 * 179.44531 * 9 7 2 11 11 C 1.38849 * 118.89478 * 179.77288 * 10 9 7 12 12 N 1.40008 * 120.77080 * 180.22230 * 11 10 9 13 13 C 1.34776 * 126.84373 * 185.28324 * 12 11 10 14 14 N 1.30826 * 108.02360 * 179.97438 * 13 12 11 15 15 C 1.33285 * 109.84775 * 359.97438 * 14 13 12 16 16 C 1.50692 * 125.49669 * 180.02562 * 15 14 13 17 17 N 1.46907 * 109.47074 * 89.97503 * 16 15 14 18 18 N 1.30723 * 109.00572 * 359.73771 * 15 14 13 19 19 C 1.39581 * 118.45831 * 0.49554 * 11 10 9 20 20 C 1.38557 * 119.47932 * 359.74596 * 19 11 10 21 21 N 1.31474 * 121.09107 * 0.02562 * 20 19 11 22 22 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 23 23 H 1.08008 * 120.55348 * 359.97438 * 10 9 7 24 24 H 1.07997 * 125.99211 * 359.94059 * 13 12 11 25 25 H 1.08997 * 109.47573 * 209.97454 * 16 15 14 26 26 H 1.09001 * 109.47258 * 329.97653 * 16 15 14 27 27 H 1.00900 * 110.99547 * 56.04637 * 17 16 15 28 28 H 1.00896 * 110.99650 * 180.02562 * 17 16 15 29 29 H 1.07998 * 120.25978 * 179.72919 * 19 11 10 30 30 H 1.08006 * 119.45186 * 180.02562 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3004 -2.4375 -0.0049 10 6 2.0072 -3.6516 -0.0161 11 6 1.2941 -4.8430 -0.0165 12 7 1.9585 -6.0754 -0.0228 13 6 1.3962 -7.2961 -0.1232 14 7 2.3539 -8.1868 -0.0915 15 6 3.5339 -7.5785 0.0270 16 6 4.8714 -8.2692 0.0965 17 7 5.4108 -8.4294 -1.2605 18 7 3.3443 -6.2857 0.0670 19 6 -0.1004 -4.7835 -0.0162 20 6 -0.7303 -3.5494 -0.0103 21 7 -0.0360 -2.4329 -0.0054 22 1 -0.4849 0.8400 -0.0004 23 1 3.0872 -3.6582 -0.0211 24 1 0.3400 -7.5030 -0.2134 25 1 5.5594 -7.6698 0.6925 26 1 4.7506 -9.2495 0.5575 27 1 5.4717 -7.5398 -1.7328 28 1 6.3079 -8.8909 -1.2408 29 1 -0.6839 -5.6923 -0.0209 30 1 -1.8093 -3.5039 -0.0096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168756710.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:45:20 Heat of formation + Delta-G solvation = 105.729569 kcal Electronic energy + Delta-G solvation = -16495.500431 eV Core-core repulsion = 13712.750565 eV Total energy + Delta-G solvation = -2782.749866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.34384 -40.18826 -36.58713 -35.60079 -34.59679 -32.52230 -31.96387 -30.80954 -27.85087 -26.91764 -24.61650 -23.66224 -22.46864 -21.23683 -20.01619 -18.24838 -17.29812 -17.01176 -16.76608 -16.50283 -16.17309 -15.97768 -15.45816 -14.98725 -14.42524 -14.26865 -14.16789 -13.50544 -13.32156 -13.11113 -12.95786 -12.73696 -12.28276 -12.11616 -11.77684 -11.21709 -11.20889 -10.95940 -9.80214 -9.77031 -9.69201 -9.57772 -8.41993 -6.66610 -0.02885 0.74528 1.20505 1.31625 1.39774 1.50623 1.54812 1.76377 2.19050 2.75048 3.03920 3.41502 3.75018 3.78501 3.84961 4.12883 4.30346 4.48874 4.50169 4.66827 4.73878 4.86215 5.12031 5.20472 5.28716 5.39443 5.60037 5.62368 5.97850 6.12005 6.17936 6.49528 6.55285 6.80275 6.96329 8.03590 8.33647 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.032334 B = 0.005468 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.745647 B = 5119.926939 C = 5908.403312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.238 3.762 10 C -0.285 4.285 11 C 0.194 3.806 12 N -0.325 5.325 13 C 0.264 3.736 14 N -0.545 5.545 15 C 0.215 3.785 16 C 0.163 3.837 17 N -0.846 5.846 18 N -0.345 5.345 19 C -0.316 4.316 20 C 0.139 3.861 21 N -0.518 5.518 22 H 0.285 0.715 23 H 0.100 0.900 24 H 0.260 0.740 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.343 0.657 28 H 0.367 0.633 29 H 0.151 0.849 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -8.487 0.030 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.104 0.896 9 C 0.114 3.886 10 C -0.311 4.311 11 C 0.097 3.903 12 N -0.108 5.108 13 C -0.030 4.030 14 N -0.272 5.272 15 C -0.068 4.068 16 C 0.030 3.970 17 N -0.380 5.380 18 N -0.173 5.173 19 C -0.342 4.342 20 C -0.028 4.028 21 N -0.232 5.232 22 H 0.096 0.904 23 H 0.118 0.882 24 H 0.276 0.724 25 H 0.081 0.919 26 H 0.133 0.867 27 H 0.155 0.845 28 H 0.183 0.817 29 H 0.169 0.831 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.025 -7.816 -0.043 8.381 hybrid contribution 1.188 0.594 0.299 1.362 sum 4.213 -7.222 0.256 8.365 Atomic orbital electron populations 1.70174 1.08731 1.29663 1.27751 1.26966 0.95830 1.04406 0.92469 0.85064 0.79193 0.75762 0.79178 1.18175 1.18673 1.18665 1.20045 0.94808 0.90413 1.43306 0.89631 1.18809 0.88814 0.92074 0.88876 1.21492 0.99077 0.92021 1.18469 1.17754 0.91750 0.81309 0.99521 1.47698 1.04421 1.06672 1.52027 1.26981 1.02408 0.79160 0.94482 1.70494 0.98245 1.33368 1.25134 1.24928 0.97100 0.87526 0.97239 1.20009 0.85303 0.99861 0.91806 1.58529 1.33988 1.28994 1.16467 1.78044 0.92733 1.18960 1.27596 1.21378 0.90171 1.00755 1.21846 1.23060 1.00641 0.87342 0.91749 1.68703 1.07151 1.28738 1.18574 0.90446 0.88202 0.72424 0.91872 0.86727 0.84517 0.81682 0.83130 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.22 11.46 21.84 0.25 -37.97 16 2 C 0.03 1.31 5.50 85.29 0.47 1.78 16 3 Si 0.99 36.93 29.56 68.60 2.03 38.95 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.46 -24.50 9.14 23.49 0.21 -24.29 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.24 13.06 6.55 40.20 0.26 13.32 16 10 C -0.29 -14.59 9.49 22.96 0.22 -14.37 16 11 C 0.19 8.64 6.73 38.31 0.26 8.90 16 12 N -0.33 -12.97 3.81 -190.81 -0.73 -13.70 16 13 C 0.26 8.51 12.01 180.25 2.16 10.67 16 14 N -0.55 -18.37 11.19 -191.52 -2.14 -20.52 16 15 C 0.21 7.27 7.65 138.61 1.06 8.33 16 16 C 0.16 3.93 7.41 85.55 0.63 4.57 16 17 N -0.85 -18.25 9.61 -190.00 -1.83 -20.08 16 18 N -0.35 -13.88 12.15 -51.31 -0.62 -14.50 16 19 C -0.32 -12.38 9.56 22.67 0.22 -12.17 16 20 C 0.14 6.02 11.17 84.82 0.95 6.97 16 21 N -0.52 -27.44 7.86 -189.30 -1.49 -28.92 16 22 H 0.28 13.04 8.29 -92.71 -0.77 12.27 16 23 H 0.10 5.21 7.83 -2.91 -0.02 5.19 16 24 H 0.26 5.62 7.20 -2.91 -0.02 5.60 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.34 7.94 8.98 -89.69 -0.81 7.13 16 28 H 0.37 5.32 9.08 -89.70 -0.81 4.51 16 29 H 0.15 4.40 6.95 -2.91 -0.02 4.38 16 30 H 0.16 5.83 8.06 -2.91 -0.02 5.81 16 Total: -1.00 -67.58 272.70 1.50 -66.08 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.42 Total: 26.93 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.45 Total: 3.72 kcal Atomic # 7 Polarization: -129.13 SS G_CDS: -6.56 Total: -135.69 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.95 kcal Total: -67.58 1.50 -66.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168756710.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.808 kcal (2) G-P(sol) polarization free energy of solvation -67.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds