Wall clock time and date at job start Sun Mar 29 2020 22:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99679 * 2 1 4 4 C 1.53005 * 109.46933 * 121.72543 * 3 2 1 5 5 S 1.81402 * 115.55055 * 65.34423 * 4 3 2 6 6 O 1.42093 * 110.54261 * 166.16306 * 5 4 3 7 7 O 1.42100 * 110.54175 * 302.91255 * 5 4 3 8 8 N 1.65596 * 104.45159 * 54.53619 * 5 4 3 9 9 C 1.46497 * 119.99801 * 65.42408 * 8 5 4 10 10 C 1.50704 * 109.47312 * 161.08156 * 9 8 5 11 11 H 1.08003 * 119.99694 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99714 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00264 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47420 * 90.00159 * 14 12 10 16 16 H 1.48503 * 109.47297 * 210.00112 * 14 12 10 17 17 H 1.48501 * 109.47222 * 329.99967 * 14 12 10 18 18 C 1.52997 * 117.49711 * 279.67195 * 4 3 2 19 19 C 1.53003 * 117.50077 * 211.01414 * 4 3 2 20 20 H 1.07997 * 120.00004 * 359.72117 * 1 2 3 21 21 H 1.08001 * 119.99681 * 179.72090 * 1 2 3 22 22 H 1.07998 * 120.00057 * 180.28489 * 2 1 3 23 23 H 1.08996 * 109.47294 * 241.72201 * 3 2 1 24 24 H 1.08997 * 109.47795 * 1.72489 * 3 2 1 25 25 H 0.96998 * 120.00294 * 245.42940 * 8 5 4 26 26 H 1.08999 * 109.47187 * 281.07932 * 9 8 5 27 27 H 1.08995 * 109.47418 * 41.07762 * 9 8 5 28 28 H 0.97004 * 120.00318 * 179.97438 * 13 12 10 29 29 H 1.08997 * 117.49927 * 0.02562 * 18 4 3 30 30 H 1.09011 * 117.49737 * 145.01807 * 18 4 3 31 31 H 1.08991 * 117.49953 * 214.97684 * 19 4 3 32 32 H 1.09005 * 117.49393 * 0.02562 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9753 1.3676 1.2270 5 16 4.3191 0.1497 1.2659 6 8 5.2747 0.4930 2.2599 7 8 3.7992 -1.1696 1.1741 8 7 5.1209 0.3731 -0.1658 9 6 5.8258 1.6315 -0.4219 10 6 6.8280 1.4296 -1.5291 11 1 6.9300 0.4606 -1.9951 12 6 7.6155 2.4816 -1.9464 13 7 8.4904 2.3053 -2.9123 14 14 7.4396 4.1573 -1.1399 15 1 8.3646 4.2489 0.0182 16 1 7.7728 5.2180 -2.1245 17 1 6.0417 4.3375 -0.6724 18 6 2.3380 1.7591 2.5616 19 6 3.2530 2.7454 1.8316 20 1 -0.5400 0.9353 0.0046 21 1 -0.5400 -0.9353 -0.0046 22 1 1.8500 -0.9353 -0.0047 23 1 2.6667 1.3764 -0.9050 24 1 1.3556 2.1334 0.0309 25 1 5.1237 -0.3292 -0.8348 26 1 5.1077 2.3966 -0.7169 27 1 6.3434 1.9488 0.4833 28 1 9.0442 3.0455 -3.2062 29 1 1.2690 1.9719 2.5657 30 1 2.7264 1.2851 3.4632 31 1 4.2429 2.9199 2.2529 32 1 2.7856 3.6074 1.3553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190766938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:53 Heat of formation + Delta-G solvation = -55.030964 kcal Electronic energy + Delta-G solvation = -16350.019306 eV Core-core repulsion = 13631.156790 eV Total energy + Delta-G solvation = -2718.862517 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.06580 -38.25543 -37.05676 -36.49644 -34.80660 -34.21642 -29.34210 -28.52415 -23.99743 -23.56776 -23.20349 -20.88351 -20.23626 -19.21480 -17.98197 -17.69956 -17.34758 -16.50256 -16.04244 -15.63846 -15.18297 -14.88251 -14.57235 -14.38876 -14.12410 -13.72399 -13.45774 -13.25981 -13.15595 -12.72748 -12.54626 -12.38595 -12.23696 -12.13395 -11.84144 -11.63102 -11.31536 -11.23132 -10.85882 -10.26141 -10.16684 -8.32123 -6.39567 -0.66177 1.37307 1.38984 1.42078 1.51039 1.77492 2.32483 2.35005 2.87157 3.03157 3.16585 3.52040 3.74716 3.83952 4.19032 4.33552 4.42341 4.55519 4.60472 4.73677 4.86384 4.96305 5.04121 5.06731 5.10244 5.11369 5.43219 5.79106 5.87709 6.19017 6.26671 6.66578 7.24127 8.83892 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.007794 C = 0.007688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.097056 B = 3591.687768 C = 3641.197885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.191 4.191 3 C -0.033 4.033 4 C -0.642 4.642 5 S 2.636 3.364 6 O -0.996 6.996 7 O -0.988 6.988 8 N -1.105 6.105 9 C 0.228 3.772 10 C -0.544 4.544 11 H 0.042 0.958 12 C 0.012 3.988 13 N -0.943 5.943 14 Si 0.936 3.064 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.224 1.224 18 C -0.108 4.108 19 C -0.121 4.121 20 H 0.116 0.884 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.080 0.920 24 H 0.107 0.893 25 H 0.413 0.587 26 H 0.044 0.956 27 H 0.026 0.974 28 H 0.270 0.730 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.412 3.286 9.121 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.209 4.209 3 C -0.071 4.071 4 C -0.735 4.735 5 S 2.732 3.268 6 O -0.987 6.987 7 O -0.978 6.978 8 N -0.863 5.863 9 C 0.102 3.898 10 C -0.583 4.583 11 H 0.061 0.939 12 C -0.187 4.187 13 N -0.582 5.582 14 Si 0.758 3.242 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.147 1.147 18 C -0.146 4.146 19 C -0.159 4.159 20 H 0.134 0.866 21 H 0.124 0.876 22 H 0.121 0.879 23 H 0.099 0.901 24 H 0.126 0.874 25 H 0.248 0.752 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.031 2.858 9.816 19.864 hybrid contribution 0.503 0.266 -0.846 1.020 sum -16.528 3.125 8.970 19.063 Atomic orbital electron populations 1.24012 0.94922 1.03064 0.98866 1.23214 0.97491 0.98374 1.01825 1.20037 0.96770 0.97274 0.93042 1.31782 1.19397 1.16417 1.05935 1.03753 0.75268 0.74873 0.72871 1.93518 1.59108 1.85919 1.60108 1.93491 1.81821 1.36277 1.86259 1.55158 1.67349 1.26507 1.37328 1.19204 0.92061 0.82604 0.95924 1.21397 1.20354 0.97820 1.18716 0.93949 1.25879 0.93986 1.03650 0.95170 1.70037 1.24175 1.34064 1.29957 0.85879 0.81570 0.78095 0.78675 1.19445 1.20356 1.14675 1.23144 1.02161 0.99911 0.89415 1.23190 1.02532 0.90172 1.00026 0.86611 0.87649 0.87897 0.90133 0.87437 0.75249 0.93790 0.95577 0.92129 0.83963 0.87370 0.87664 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 14.32 67.78 0.97 -2.15 16 2 C -0.19 -4.50 9.06 25.65 0.23 -4.26 16 3 C -0.03 -0.75 5.54 29.85 0.17 -0.58 16 4 C -0.64 -16.02 2.06 -10.79 -0.02 -16.04 16 5 S 2.64 93.47 5.37 -56.49 -0.30 93.16 16 6 O -1.00 -41.39 16.99 -127.65 -2.17 -43.56 16 7 O -0.99 -38.11 16.15 -127.65 -2.06 -40.17 16 8 N -1.10 -44.16 5.83 -190.80 -1.11 -45.28 16 9 C 0.23 10.25 4.99 85.63 0.43 10.68 16 10 C -0.54 -30.33 9.83 25.60 0.25 -30.08 16 11 H 0.04 2.61 7.93 -2.91 -0.02 2.59 16 12 C 0.01 0.67 5.47 84.66 0.46 1.14 16 13 N -0.94 -57.38 13.96 21.45 0.30 -57.08 16 14 Si 0.94 40.89 27.47 68.60 1.88 42.77 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.22 -8.38 6.54 99.48 0.65 -7.72 16 18 C -0.11 -1.95 10.02 30.62 0.31 -1.64 16 19 C -0.12 -2.50 9.86 30.62 0.30 -2.20 16 20 H 0.12 1.57 7.83 -2.91 -0.02 1.55 16 21 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 22 H 0.10 2.92 6.44 -2.91 -0.02 2.91 16 23 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 24 H 0.11 1.77 7.73 -2.39 -0.02 1.75 16 25 H 0.41 16.29 8.54 -96.75 -0.83 15.47 16 26 H 0.04 1.77 7.20 -2.39 -0.02 1.75 16 27 H 0.03 1.20 7.04 -2.39 -0.02 1.19 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 29 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.11 2.44 7.88 -2.39 -0.02 2.42 16 32 H 0.14 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -71.53 287.21 -0.14 -71.67 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.23 Total: 23.63 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 3.10 Total: -45.14 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -0.81 Total: -102.36 kcal Atomic # 8 Polarization: -79.50 SS G_CDS: -4.23 Total: -83.73 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.88 Total: 42.77 kcal Atomic # 16 Polarization: 93.47 SS G_CDS: -0.30 Total: 93.16 kcal Total: -71.53 -0.14 -71.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190766938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.635 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds