Wall clock time and date at job start Sun Mar 29 2020 22:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.87878 * 2 1 4 4 C 1.54937 * 110.99772 * 236.14700 * 2 1 3 5 5 N 1.47564 * 104.83274 * 205.08422 * 4 2 1 6 6 S 1.65600 * 125.70612 * 204.02448 * 5 4 2 7 7 O 1.42095 * 106.40146 * 23.54076 * 6 5 4 8 8 O 1.42101 * 106.39701 * 156.46398 * 6 5 4 9 9 C 1.76197 * 107.21828 * 270.00017 * 6 5 4 10 10 H 1.08002 * 120.00488 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00131 * 180.02562 * 9 6 5 12 12 N 1.31520 * 119.99825 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 120.00175 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.47084 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47053 * 119.99975 * 13 11 9 16 16 H 1.48502 * 109.46667 * 239.99482 * 13 11 9 17 17 C 1.46730 * 108.56284 * 24.02935 * 5 4 2 18 18 C 1.52691 * 121.03515 * 143.15133 * 17 5 4 19 19 C 1.52710 * 120.99555 * 214.73000 * 17 5 4 20 20 C 1.54051 * 107.62214 * 358.89288 * 17 5 4 21 21 H 1.09002 * 109.47153 * 299.29394 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.29585 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.29566 * 1 2 3 24 24 H 1.09004 * 110.36026 * 323.89222 * 4 2 1 25 25 H 1.08996 * 110.36651 * 86.20680 * 4 2 1 26 26 H 0.96996 * 120.00140 * 180.02562 * 12 11 9 27 27 H 1.08996 * 117.50824 * 217.82095 * 18 17 5 28 28 H 1.09011 * 117.50518 * 2.88759 * 18 17 5 29 29 H 1.08999 * 117.51483 * 357.05906 * 19 17 5 30 30 H 1.08999 * 117.50298 * 142.12777 * 19 17 5 31 31 H 1.09001 * 110.74133 * 219.65930 * 20 17 5 32 32 H 1.08998 * 110.89364 * 96.40318 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0852 -0.8058 -1.2013 5 7 3.4267 -1.2466 -0.7728 6 16 4.6816 -1.6408 -1.7789 7 8 4.4352 -0.9726 -3.0085 8 8 5.8721 -1.4645 -1.0233 9 6 4.5574 -3.3657 -2.1163 10 1 3.7572 -3.9451 -1.6801 11 6 5.4825 -3.9760 -2.9365 12 7 6.4573 -3.2706 -3.4674 13 14 5.3505 -5.8046 -3.2949 14 1 4.1740 -6.3649 -2.5828 15 1 5.1900 -6.0122 -4.7566 16 1 6.5829 -6.4903 -2.8299 17 6 3.4621 -1.2771 0.6937 18 6 4.2345 -2.3623 1.4402 19 6 4.7342 -0.9156 1.4574 20 6 2.0862 -0.8075 1.2033 21 1 -0.3633 0.5028 0.8963 22 1 -0.3633 -1.0276 -0.0126 23 1 -0.3634 0.5247 -0.8836 24 1 1.4502 -1.6680 -1.4055 25 1 2.1580 -0.1698 -2.0835 26 1 7.1079 -3.6999 -4.0447 27 1 3.7938 -2.7537 2.3570 28 1 4.7957 -3.0816 0.8435 29 1 5.6239 -0.6832 0.8722 30 1 4.6220 -0.3554 2.3856 31 1 2.1966 -0.1681 2.0792 32 1 1.4433 -1.6587 1.4272 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192965322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:14 Heat of formation + Delta-G solvation = -94.752647 kcal Electronic energy + Delta-G solvation = -16823.667219 eV Core-core repulsion = 14103.082241 eV Total energy + Delta-G solvation = -2720.584978 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26853 -37.61747 -36.22777 -35.69903 -35.24911 -32.86977 -28.39799 -28.23459 -26.32364 -23.29831 -21.87540 -21.25694 -20.49460 -18.94865 -17.99783 -17.21907 -16.98544 -16.05924 -15.84392 -15.39599 -14.99163 -14.30365 -14.17271 -13.98323 -13.75804 -13.40246 -13.32848 -13.08470 -12.71968 -12.54503 -12.41221 -12.34026 -12.32241 -12.07978 -11.94299 -11.50642 -11.31479 -11.25228 -11.06299 -10.89431 -9.48136 -8.79175 -7.54662 0.21522 1.28082 1.28385 1.47014 2.15579 2.51147 2.73520 2.96441 3.55957 3.72808 3.73967 3.81922 4.06650 4.17273 4.23839 4.49125 4.65114 4.75837 4.81828 4.85076 4.92876 4.97127 5.09710 5.16712 5.18964 5.24686 5.38701 5.41596 5.48524 5.57715 5.85629 5.88651 6.71633 8.15412 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.029449 B = 0.008993 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.562936 B = 3112.936636 C = 3233.940635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.083 0.917 4 C 0.110 3.890 5 N -0.995 5.995 6 S 2.725 3.275 7 O -1.046 7.046 8 O -1.027 7.027 9 C -1.038 5.038 10 H 0.114 0.886 11 C 0.069 3.931 12 N -0.895 5.895 13 Si 0.991 3.009 14 H -0.247 1.247 15 H -0.256 1.256 16 H -0.257 1.257 17 C 0.103 3.897 18 C -0.194 4.194 19 C -0.202 4.202 20 C -0.069 4.069 21 H 0.081 0.919 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.300 0.700 27 H 0.137 0.863 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 1.828 10.108 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.101 0.899 4 C -0.015 4.015 5 N -0.829 5.829 6 S 2.829 3.171 7 O -1.036 7.036 8 O -1.017 7.017 9 C -1.172 5.172 10 H 0.132 0.868 11 C -0.144 4.144 12 N -0.526 5.526 13 Si 0.808 3.192 14 H -0.170 1.170 15 H -0.181 1.181 16 H -0.181 1.181 17 C 0.014 3.986 18 C -0.233 4.233 19 C -0.241 4.241 20 C -0.108 4.108 21 H 0.100 0.900 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.155 0.845 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.921 2.491 9.571 14.733 hybrid contribution 0.574 -1.308 -0.768 1.622 sum -10.347 1.183 8.803 13.636 Atomic orbital electron populations 1.21689 0.91369 1.02911 1.03164 1.22377 0.97587 0.98705 0.92768 0.89852 1.22323 0.81893 0.98583 0.98703 1.58226 1.27033 1.82622 1.15063 0.99752 0.70577 0.76156 0.70580 1.93283 1.85755 1.78193 1.46373 1.93268 1.47249 1.88790 1.72393 1.30973 1.22820 1.20830 1.42560 0.86759 1.26065 0.90989 1.07014 0.90296 1.69993 1.13695 1.40894 1.28061 0.85099 0.80209 0.74337 0.79508 1.17035 1.18052 1.18065 1.21193 0.95553 1.03295 0.78543 1.23447 1.04002 0.92400 1.03442 1.23785 0.98333 0.98779 1.03232 1.22212 0.90159 1.00496 0.97938 0.90034 0.91807 0.92001 0.90965 0.92041 0.89028 0.84492 0.91508 0.89894 0.84950 0.87515 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.28 71.98 0.67 -1.55 16 2 C -0.09 -2.28 3.64 -9.37 -0.03 -2.32 16 3 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 4 C 0.11 3.83 6.59 86.84 0.57 4.40 16 5 N -0.99 -43.22 3.70 -464.71 -1.72 -44.94 16 6 S 2.73 155.75 5.03 -56.49 -0.28 155.47 16 7 O -1.05 -66.31 17.35 -128.00 -2.22 -68.53 16 8 O -1.03 -62.93 14.58 -128.00 -1.87 -64.80 16 9 C -1.04 -59.96 9.75 67.73 0.66 -59.30 16 10 H 0.11 6.08 7.81 -2.91 -0.02 6.05 16 11 C 0.07 3.97 5.46 84.65 0.46 4.43 16 12 N -0.89 -55.05 13.19 21.45 0.28 -54.77 16 13 Si 0.99 42.51 29.54 68.60 2.03 44.54 16 14 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 15 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 17 C 0.10 3.61 2.96 3.72 0.01 3.62 16 18 C -0.19 -6.79 9.88 30.51 0.30 -6.49 16 19 C -0.20 -7.20 9.72 30.52 0.30 -6.90 16 20 C -0.07 -1.61 6.15 31.71 0.20 -1.41 16 21 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 23 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 24 H 0.07 2.31 8.03 -2.38 -0.02 2.29 16 25 H 0.06 2.29 7.79 -2.39 -0.02 2.27 16 26 H 0.30 16.44 8.31 -92.71 -0.77 15.67 16 27 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.07 2.88 8.03 -2.38 -0.02 2.86 16 29 H 0.08 3.73 5.85 -2.39 -0.01 3.72 16 30 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.11 1.84 8.11 -2.39 -0.02 1.82 16 32 H 0.10 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -79.06 278.92 0.46 -78.60 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 1.10 Total: 19.95 kcal Atomic # 6 Polarization: -68.66 SS G_CDS: 3.13 Total: -65.52 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -1.43 Total: -99.71 kcal Atomic # 8 Polarization: -129.24 SS G_CDS: -4.09 Total: -133.33 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 155.75 SS G_CDS: -0.28 Total: 155.47 kcal Total: -79.06 0.46 -78.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.150 kcal (2) G-P(sol) polarization free energy of solvation -79.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds