Wall clock time and date at job start Sun Mar 29 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 S 1.76193 * 120.00213 * 2 1 4 4 O 1.42105 * 106.40403 * 228.54050 * 3 2 1 5 5 O 1.42098 * 106.40145 * 1.45979 * 3 2 1 6 6 N 1.65606 * 107.21910 * 115.00161 * 3 2 1 7 7 C 1.46923 * 120.62553 * 269.71992 * 6 3 2 8 8 C 1.53625 * 108.54012 * 126.36762 * 7 6 3 9 9 C 1.53043 * 109.24213 * 54.85673 * 8 7 6 10 10 C 1.50703 * 109.44755 * 178.49464 * 9 8 7 11 11 H 1.07999 * 119.99270 * 120.06304 * 10 9 8 12 12 C 1.37872 * 120.00061 * 300.05706 * 10 9 8 13 13 N 1.31513 * 120.00306 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99839 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46965 * 90.00232 * 14 12 10 16 16 H 1.48500 * 109.46984 * 210.00457 * 14 12 10 17 17 H 1.48497 * 109.46876 * 330.00402 * 14 12 10 18 18 C 1.53044 * 109.53628 * 298.50763 * 9 8 7 19 19 C 1.46921 * 120.63289 * 89.99915 * 6 3 2 20 20 H 1.08004 * 120.00066 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.00088 * 179.97438 * 1 2 3 22 22 H 1.08006 * 119.99632 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.58696 * 246.19856 * 7 6 3 24 24 H 1.09000 * 109.58966 * 6.63038 * 7 6 3 25 25 H 1.08994 * 109.63930 * 294.86214 * 8 7 6 26 26 H 1.09009 * 109.43212 * 174.72261 * 8 7 6 27 27 H 1.08997 * 109.46008 * 58.52805 * 9 8 7 28 28 H 0.96996 * 119.99814 * 179.97438 * 13 12 10 29 29 H 1.08993 * 109.49377 * 301.41584 * 18 9 8 30 30 H 1.08997 * 109.49591 * 181.31373 * 18 9 8 31 31 H 1.09003 * 109.58512 * 353.37799 * 19 6 3 32 32 H 1.09004 * 109.58693 * 113.65432 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 16 2.1910 1.5258 0.0000 4 8 3.1733 1.4221 -1.0216 5 8 1.2115 2.5547 0.0347 6 7 3.0151 1.6161 1.4336 7 6 2.3975 2.2353 2.6142 8 6 2.4690 1.2395 3.7818 9 6 3.9225 0.8067 3.9873 10 6 4.0031 -0.1420 5.1555 11 1 4.3795 -1.1441 5.0122 12 6 3.5966 0.2694 6.4070 13 7 3.1379 1.4895 6.5814 14 14 3.6959 -0.9069 7.8549 15 1 5.0201 -0.7710 8.5130 16 1 2.6231 -0.5838 8.8296 17 1 3.5234 -2.3008 7.3728 18 6 4.4312 0.1060 2.7254 19 6 4.3798 1.0840 1.5474 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9354 -0.0004 22 1 1.8499 -0.9354 -0.0004 23 1 2.9373 3.1461 2.8736 24 1 1.3560 2.4740 2.3990 25 1 1.8577 0.3658 3.5560 26 1 2.1000 1.7176 4.6893 27 1 4.5375 1.6837 4.1887 28 1 2.8516 1.7788 7.4618 29 1 3.8013 -0.7570 2.5095 30 1 5.4587 -0.2226 2.8809 31 1 4.6466 0.5629 0.6279 32 1 5.0783 1.9031 1.7189 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198587676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:43 Heat of formation + Delta-G solvation = -58.189405 kcal Electronic energy + Delta-G solvation = -16513.755566 eV Core-core repulsion = 13794.756089 eV Total energy + Delta-G solvation = -2718.999477 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.73008 -37.03967 -35.64638 -33.48125 -33.39412 -30.88279 -30.07661 -25.77201 -22.72416 -22.42171 -22.04069 -19.34619 -18.30677 -17.50657 -16.77374 -16.21448 -15.69207 -14.59647 -14.48408 -13.93025 -13.43594 -13.16557 -12.89731 -12.78052 -12.55606 -12.12480 -11.93410 -11.84257 -11.38480 -11.01015 -10.96012 -10.72470 -10.58113 -10.53332 -10.39428 -10.08178 -9.61857 -9.22351 -9.00824 -8.43211 -8.26812 -6.03883 -4.10399 0.64838 1.44266 3.24786 3.26484 3.33868 3.36435 3.95393 4.39123 4.57003 4.97957 5.17450 5.25868 5.31936 5.72963 5.81740 5.90536 6.08280 6.13520 6.18292 6.31883 6.41209 6.43828 6.70711 6.89171 7.05344 7.16023 7.39318 7.68279 7.92603 8.05167 8.39362 8.93401 9.54749 11.01438 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039627 B = 0.006615 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.418666 B = 4231.857024 C = 4332.930547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.736 4.736 3 S 2.678 3.322 4 O -0.968 6.968 5 O -0.969 6.969 6 N -0.989 5.989 7 C 0.118 3.882 8 C -0.124 4.124 9 C 0.050 3.950 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.125 4.125 19 C 0.121 3.879 20 H 0.123 0.877 21 H 0.111 0.889 22 H 0.156 0.844 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 -1.282 -9.808 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.842 4.842 3 S 2.768 3.232 4 O -0.959 6.959 5 O -0.959 6.959 6 N -0.829 5.829 7 C -0.006 4.006 8 C -0.164 4.164 9 C 0.031 3.969 10 C -0.552 4.552 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.164 4.164 19 C -0.004 4.004 20 H 0.141 0.859 21 H 0.129 0.871 22 H 0.174 0.826 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.121 0.879 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.539 -0.569 -10.328 10.932 hybrid contribution -0.227 -1.553 1.236 1.998 sum -3.767 -2.121 -9.092 10.067 Atomic orbital electron populations 1.24204 0.95216 1.04002 0.83209 1.33741 1.09018 1.26306 1.15141 1.02231 0.73387 0.74562 0.73008 1.93557 1.59551 1.87400 1.55343 1.93546 1.61444 1.54341 1.86581 1.57535 1.24817 1.72856 1.27668 1.21822 0.96510 0.96995 0.85282 1.22107 1.00686 0.96817 0.96771 1.18596 0.92148 0.95622 0.90496 1.21219 1.42181 0.98938 0.92829 0.92756 1.24963 0.95208 0.95109 0.98718 1.69838 1.43342 1.16882 1.22857 0.86633 0.77701 0.81335 0.82526 1.20726 1.21281 1.20069 1.22025 1.00857 0.97517 0.95994 1.21553 0.81304 0.97801 0.99710 0.85948 0.87131 0.82642 0.91428 0.90905 0.94349 0.87855 0.95315 0.92959 0.93021 0.92102 0.90620 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.31 14.23 29.02 0.41 0.10 16 2 C -0.74 -9.80 10.32 29.02 0.30 -9.50 16 3 S 2.68 42.07 5.84 -107.50 -0.63 41.44 16 4 O -0.97 -17.18 16.73 -57.17 -0.96 -18.13 16 5 O -0.97 -16.74 15.58 -57.17 -0.89 -17.63 16 6 N -0.99 -16.66 3.28 -113.27 -0.37 -17.04 16 7 C 0.12 2.15 6.41 -3.49 -0.02 2.13 16 8 C -0.12 -2.69 5.17 -26.38 -0.14 -2.83 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 10 C -0.51 -13.38 8.56 -34.44 -0.29 -13.67 16 11 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 12 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 13 N -0.89 -24.22 11.30 55.43 0.63 -23.60 16 14 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 19 C 0.12 2.02 6.37 -3.71 -0.02 1.99 16 20 H 0.12 1.31 7.18 -52.48 -0.38 0.93 16 21 H 0.11 0.96 8.06 -52.48 -0.42 0.54 16 22 H 0.16 1.92 8.06 -52.48 -0.42 1.49 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.07 1.21 7.12 -51.93 -0.37 0.84 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.10 2.52 6.03 -51.92 -0.31 2.20 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.12 7.13 -51.93 -0.37 0.75 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 275.80 15.07 4.16 4.16 Total: -1.00 -30.04 275.80 -7.63 -37.67 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.35 Total: -0.61 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -0.19 Total: -21.83 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.25 Total: -40.63 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.85 Total: -35.77 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 42.07 SS G_CDS: -0.63 Total: 41.44 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.04 -7.63 -37.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198587676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.523 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds