Wall clock time and date at job start Sun Mar 29 2020 22:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 S 1.76193 * 120.00213 * 2 1 4 4 O 1.42105 * 106.40403 * 228.54050 * 3 2 1 5 5 O 1.42098 * 106.40145 * 1.45979 * 3 2 1 6 6 N 1.65606 * 107.21910 * 115.00161 * 3 2 1 7 7 C 1.46923 * 120.62553 * 269.71992 * 6 3 2 8 8 C 1.53625 * 108.54012 * 126.36762 * 7 6 3 9 9 C 1.53043 * 109.24213 * 54.85673 * 8 7 6 10 10 C 1.50703 * 109.44755 * 178.49464 * 9 8 7 11 11 H 1.07999 * 119.99270 * 120.06304 * 10 9 8 12 12 C 1.37872 * 120.00061 * 300.05706 * 10 9 8 13 13 N 1.31513 * 120.00306 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99839 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46965 * 90.00232 * 14 12 10 16 16 H 1.48500 * 109.46984 * 210.00457 * 14 12 10 17 17 H 1.48497 * 109.46876 * 330.00402 * 14 12 10 18 18 C 1.53044 * 109.53628 * 298.50763 * 9 8 7 19 19 C 1.46921 * 120.63289 * 89.99915 * 6 3 2 20 20 H 1.08004 * 120.00066 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.00088 * 179.97438 * 1 2 3 22 22 H 1.08006 * 119.99632 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.58696 * 246.19856 * 7 6 3 24 24 H 1.09000 * 109.58966 * 6.63038 * 7 6 3 25 25 H 1.08994 * 109.63930 * 294.86214 * 8 7 6 26 26 H 1.09009 * 109.43212 * 174.72261 * 8 7 6 27 27 H 1.08997 * 109.46008 * 58.52805 * 9 8 7 28 28 H 0.96996 * 119.99814 * 179.97438 * 13 12 10 29 29 H 1.08993 * 109.49377 * 301.41584 * 18 9 8 30 30 H 1.08997 * 109.49591 * 181.31373 * 18 9 8 31 31 H 1.09003 * 109.58512 * 353.37799 * 19 6 3 32 32 H 1.09004 * 109.58693 * 113.65432 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 16 2.1910 1.5258 0.0000 4 8 3.1733 1.4221 -1.0216 5 8 1.2115 2.5547 0.0347 6 7 3.0151 1.6161 1.4336 7 6 2.3975 2.2353 2.6142 8 6 2.4690 1.2395 3.7818 9 6 3.9225 0.8067 3.9873 10 6 4.0031 -0.1420 5.1555 11 1 4.3795 -1.1441 5.0122 12 6 3.5966 0.2694 6.4070 13 7 3.1379 1.4895 6.5814 14 14 3.6959 -0.9069 7.8549 15 1 5.0201 -0.7710 8.5130 16 1 2.6231 -0.5838 8.8296 17 1 3.5234 -2.3008 7.3728 18 6 4.4312 0.1060 2.7254 19 6 4.3798 1.0840 1.5474 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9354 -0.0004 22 1 1.8499 -0.9354 -0.0004 23 1 2.9373 3.1461 2.8736 24 1 1.3560 2.4740 2.3990 25 1 1.8577 0.3658 3.5560 26 1 2.1000 1.7176 4.6893 27 1 4.5375 1.6837 4.1887 28 1 2.8516 1.7788 7.4618 29 1 3.8013 -0.7570 2.5095 30 1 5.4587 -0.2226 2.8809 31 1 4.6466 0.5629 0.6279 32 1 5.0783 1.9031 1.7189 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198587676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:42 Heat of formation + Delta-G solvation = -78.503948 kcal Electronic energy + Delta-G solvation = -16514.636471 eV Core-core repulsion = 13794.756089 eV Total energy + Delta-G solvation = -2719.880382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.26513 -38.34032 -36.95017 -35.26272 -34.39332 -32.60237 -31.63927 -27.60339 -24.23250 -23.93377 -23.25434 -20.89761 -19.63149 -18.84953 -18.24196 -17.84590 -16.96844 -16.50205 -15.64323 -15.22478 -14.89668 -14.86199 -14.46079 -14.33661 -13.68168 -13.61171 -13.44037 -13.18075 -12.89770 -12.79835 -12.55778 -12.40438 -12.06320 -11.87095 -11.75708 -11.53861 -11.37454 -10.91670 -10.76421 -10.35639 -9.80417 -8.04095 -6.17417 -0.56662 0.47819 1.42524 1.44813 1.53114 2.00079 2.45957 2.76680 3.22374 3.35236 3.81833 4.06746 4.32311 4.41929 4.54010 4.54926 4.67410 4.77439 4.84470 4.89298 4.99726 5.16096 5.24398 5.34943 5.38162 5.59244 5.67449 5.74724 6.06548 6.22387 6.44168 6.94564 7.50475 8.99090 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.039627 B = 0.006615 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.418666 B = 4231.857024 C = 4332.930547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 C -0.753 4.753 3 S 2.689 3.311 4 O -0.990 6.990 5 O -0.988 6.988 6 N -0.994 5.994 7 C 0.127 3.873 8 C -0.117 4.117 9 C 0.044 3.956 10 C -0.531 4.531 11 H 0.051 0.949 12 C 0.014 3.986 13 N -0.914 5.914 14 Si 0.947 3.053 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.270 1.270 18 C -0.118 4.118 19 C 0.122 3.878 20 H 0.128 0.872 21 H 0.145 0.855 22 H 0.168 0.832 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.037 0.963 26 H 0.073 0.927 27 H -0.001 1.001 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -2.483 -10.671 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.862 4.862 3 S 2.784 3.216 4 O -0.981 6.981 5 O -0.979 6.979 6 N -0.832 5.832 7 C 0.002 3.998 8 C -0.156 4.156 9 C 0.025 3.975 10 C -0.569 4.569 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.774 3.226 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.195 1.195 18 C -0.157 4.157 19 C -0.003 4.003 20 H 0.146 0.854 21 H 0.163 0.837 22 H 0.186 0.814 23 H 0.082 0.918 24 H 0.108 0.892 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.244 -1.742 -11.198 12.102 hybrid contribution -0.060 -1.207 1.483 1.913 sum -4.304 -2.949 -9.715 11.027 Atomic orbital electron populations 1.24642 0.94685 1.05956 0.79584 1.33365 1.09671 1.24770 1.18428 1.01664 0.72863 0.75065 0.72031 1.93525 1.60689 1.88021 1.55834 1.93516 1.61631 1.56075 1.86631 1.57502 1.25161 1.73169 1.27345 1.21596 0.97661 0.95812 0.84697 1.21892 0.99441 0.97295 0.96981 1.18594 0.92781 0.94365 0.91734 1.21612 1.41866 0.99306 0.94162 0.93056 1.25663 0.95166 0.96481 1.01112 1.69973 1.44029 1.18188 1.23189 0.85723 0.77545 0.79680 0.79650 1.20539 1.21135 1.19511 1.21899 1.00951 0.97822 0.94999 1.21563 0.81503 0.97563 0.99628 0.85441 0.83744 0.81434 0.91840 0.89215 0.94393 0.90879 0.98274 0.93105 0.92547 0.91658 0.88263 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 14.23 67.78 0.96 0.78 16 2 C -0.75 -17.88 10.32 67.78 0.70 -17.18 16 3 S 2.69 79.81 5.84 -56.49 -0.33 79.48 16 4 O -0.99 -33.53 16.73 -128.00 -2.14 -35.67 16 5 O -0.99 -32.58 15.58 -128.00 -1.99 -34.58 16 6 N -0.99 -32.23 3.28 -512.29 -1.68 -33.91 16 7 C 0.13 4.56 6.41 86.51 0.55 5.12 16 8 C -0.12 -5.08 5.17 30.82 0.16 -4.92 16 9 C 0.04 2.05 2.06 -11.51 -0.02 2.02 16 10 C -0.53 -27.87 8.56 25.60 0.22 -27.66 16 11 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 12 C 0.01 0.77 5.30 84.65 0.45 1.22 16 13 N -0.91 -50.62 11.30 21.45 0.24 -50.37 16 14 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 C -0.12 -4.39 5.30 30.67 0.16 -4.23 16 19 C 0.12 3.90 6.37 86.36 0.55 4.45 16 20 H 0.13 2.32 7.18 -2.91 -0.02 2.30 16 21 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 22 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 23 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.09 2.89 7.12 -2.39 -0.02 2.88 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 3.64 6.03 -2.38 -0.01 3.63 16 27 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.10 2.73 7.13 -2.39 -0.02 2.71 16 32 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -63.72 275.80 0.95 -62.77 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.09 Total: 8.37 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 3.74 Total: -40.40 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.44 Total: -84.28 kcal Atomic # 8 Polarization: -66.11 SS G_CDS: -4.14 Total: -70.25 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 79.81 SS G_CDS: -0.33 Total: 79.48 kcal Total: -63.72 0.95 -62.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198587676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.739 kcal (2) G-P(sol) polarization free energy of solvation -63.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds