Wall clock time and date at job start Sun Mar 29 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 S 1.76205 * 120.00243 * 2 1 4 4 O 1.42098 * 106.39936 * 1.46482 * 3 2 1 5 5 O 1.42104 * 106.40135 * 228.54140 * 3 2 1 6 6 N 1.65601 * 107.21233 * 115.00528 * 3 2 1 7 7 C 1.46931 * 120.62837 * 269.97379 * 6 3 2 8 8 C 1.53194 * 108.77708 * 233.63456 * 7 6 3 9 9 C 1.53038 * 109.31360 * 305.36735 * 8 7 6 10 10 C 1.53049 * 109.53860 * 61.36350 * 9 8 7 11 11 H 1.08994 * 109.52097 * 58.60158 * 10 9 8 12 12 C 1.50694 * 109.49905 * 178.68444 * 10 9 8 13 13 H 1.08000 * 120.00563 * 119.83815 * 12 10 9 14 14 C 1.37885 * 119.99902 * 299.83978 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.46921 * 120.63369 * 90.00555 * 6 3 2 21 21 H 1.08002 * 120.00468 * 179.97438 * 1 2 3 22 22 H 1.08004 * 120.00190 * 359.97438 * 1 2 3 23 23 H 1.08006 * 119.99702 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.58858 * 353.42594 * 7 6 3 25 25 H 1.08996 * 109.58411 * 113.84956 * 7 6 3 26 26 H 1.08999 * 109.49486 * 65.32069 * 8 7 6 27 27 H 1.08998 * 109.49330 * 185.41598 * 8 7 6 28 28 H 1.08998 * 109.46005 * 301.34854 * 9 8 7 29 29 H 1.08994 * 109.46092 * 181.38275 * 9 8 7 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.58666 * 6.57223 * 20 6 3 32 32 H 1.09000 * 109.58804 * 246.15516 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 16 2.1910 1.5259 0.0000 4 8 1.2115 2.5548 0.0348 5 8 3.1733 1.4221 -1.0216 6 7 3.0151 1.6160 1.4336 7 6 2.3955 2.2301 2.6159 8 6 3.3314 3.3167 3.1547 9 6 4.7137 2.7123 3.4119 10 6 5.2935 2.1833 2.0980 11 1 5.3601 2.9967 1.3756 12 6 6.6679 1.6175 2.3464 13 1 6.8708 0.5783 2.1334 14 6 7.6666 2.4265 2.8459 15 7 7.4197 3.6920 3.1049 16 14 9.3701 1.7249 3.1545 17 1 9.4449 1.1985 4.5411 18 1 9.6342 0.6249 2.1925 19 1 10.3854 2.7937 2.9753 20 6 4.3798 1.0839 1.5473 21 1 -0.5401 -0.9353 -0.0004 22 1 -0.5401 0.9353 0.0004 23 1 1.8499 -0.9354 -0.0004 24 1 1.4402 2.6755 2.3381 25 1 2.2381 1.4708 3.3818 26 1 3.4160 4.1198 2.4226 27 1 2.9290 3.7141 4.0865 28 1 4.6247 1.8930 4.1253 29 1 5.3747 3.4775 3.8185 30 1 8.1222 4.2610 3.4566 31 1 4.7338 0.7729 0.5643 32 1 4.3842 0.2311 2.2260 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198589085.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:06 Heat of formation + Delta-G solvation = -56.971513 kcal Electronic energy + Delta-G solvation = -16496.883467 eV Core-core repulsion = 13777.936801 eV Total energy + Delta-G solvation = -2718.946665 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.69886 -36.96809 -35.54631 -33.49851 -33.30224 -31.10006 -30.08445 -25.11119 -23.66020 -22.31218 -21.65102 -19.47946 -18.18352 -17.36155 -16.81712 -16.09842 -15.64574 -14.66604 -14.46250 -13.88769 -13.47141 -13.23077 -12.79613 -12.68962 -12.60732 -12.13828 -11.80485 -11.72020 -11.32545 -10.96245 -10.84530 -10.74947 -10.68496 -10.57693 -10.20716 -9.92932 -9.79236 -9.36115 -8.83031 -8.43865 -8.16871 -5.99932 -4.07318 0.66753 1.35931 3.30370 3.32109 3.37890 3.41343 4.01285 4.42585 4.61646 4.92328 5.22047 5.24521 5.30775 5.68943 5.73278 5.83769 6.03217 6.08548 6.23974 6.34432 6.48395 6.63351 6.64574 6.89575 7.02617 7.23484 7.45201 7.72057 7.97188 8.10522 8.40111 8.96050 9.57336 11.05626 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040365 B = 0.006837 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.508006 B = 4094.284140 C = 4398.313176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.738 4.738 3 S 2.673 3.327 4 O -0.971 6.971 5 O -0.956 6.956 6 N -0.990 5.990 7 C 0.123 3.877 8 C -0.131 4.131 9 C -0.110 4.110 10 C 0.041 3.959 11 H 0.033 0.967 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.274 1.274 19 H -0.287 1.287 20 C 0.122 3.878 21 H 0.109 0.891 22 H 0.123 0.877 23 H 0.155 0.845 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.405 -5.534 -1.274 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.843 4.843 3 S 2.764 3.236 4 O -0.961 6.961 5 O -0.946 6.946 6 N -0.830 5.830 7 C -0.003 4.003 8 C -0.170 4.170 9 C -0.148 4.148 10 C 0.021 3.979 11 H 0.051 0.949 12 C -0.554 4.554 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.199 1.199 19 H -0.213 1.213 20 C -0.002 4.002 21 H 0.127 0.873 22 H 0.141 0.859 23 H 0.173 0.827 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.336 -4.809 -1.888 13.375 hybrid contribution 0.726 -1.218 0.538 1.516 sum -11.611 -6.028 -1.350 13.152 Atomic orbital electron populations 1.24201 0.95205 1.03918 0.83821 1.33921 1.09011 1.26730 1.14618 1.02414 0.73338 0.74453 0.73415 1.93527 1.61766 1.54204 1.86627 1.93592 1.59020 1.87042 1.54977 1.57568 1.25490 1.72964 1.27010 1.21447 0.96049 0.95890 0.86864 1.21953 0.97989 0.97367 0.99737 1.21595 0.92938 1.00750 0.99558 1.18953 0.92126 0.93162 0.93667 0.94906 1.21092 0.94523 0.96548 1.43265 0.92421 1.24946 0.98708 0.94799 0.95397 1.69880 1.33112 1.05070 1.44585 0.86582 0.84095 0.78746 0.78474 1.20764 1.19876 1.21265 1.21894 0.78408 0.98241 1.01612 0.87272 0.85929 0.82669 0.90301 0.92164 0.92196 0.92508 0.94607 0.88717 0.92955 0.90137 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.33 14.23 29.02 0.41 0.08 16 2 C -0.74 -9.27 10.32 29.02 0.30 -8.97 16 3 S 2.67 44.10 5.88 -107.50 -0.63 43.46 16 4 O -0.97 -17.06 15.46 -57.17 -0.88 -17.95 16 5 O -0.96 -19.17 16.61 -57.17 -0.95 -20.12 16 6 N -0.99 -17.37 3.29 -113.52 -0.37 -17.75 16 7 C 0.12 1.97 6.48 -3.71 -0.02 1.94 16 8 C -0.13 -2.42 6.08 -26.61 -0.16 -2.59 16 9 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 10 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 11 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.52 -13.73 8.56 -34.44 -0.29 -14.03 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.12 2.46 5.70 -3.71 -0.02 2.44 16 21 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 22 H 0.12 1.17 7.18 -52.48 -0.38 0.80 16 23 H 0.16 1.78 8.06 -52.48 -0.42 1.35 16 24 H 0.08 1.12 6.92 -51.93 -0.36 0.77 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.08 1.64 6.92 -51.93 -0.36 1.28 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 275.38 15.07 4.15 4.15 Total: -1.00 -31.13 275.38 -7.64 -38.76 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.33 Total: -0.85 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -0.22 Total: -21.32 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.25 Total: -42.03 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.83 Total: -38.06 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 44.10 SS G_CDS: -0.63 Total: 43.46 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.13 -7.64 -38.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198589085.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.208 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds