Wall clock time and date at job start Sun Mar 29 2020 22:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 S 1.76205 * 120.00243 * 2 1 4 4 O 1.42098 * 106.39936 * 1.46482 * 3 2 1 5 5 O 1.42104 * 106.40135 * 228.54140 * 3 2 1 6 6 N 1.65601 * 107.21233 * 115.00528 * 3 2 1 7 7 C 1.46931 * 120.62837 * 269.97379 * 6 3 2 8 8 C 1.53194 * 108.77708 * 233.63456 * 7 6 3 9 9 C 1.53038 * 109.31360 * 305.36735 * 8 7 6 10 10 C 1.53049 * 109.53860 * 61.36350 * 9 8 7 11 11 H 1.08994 * 109.52097 * 58.60158 * 10 9 8 12 12 C 1.50694 * 109.49905 * 178.68444 * 10 9 8 13 13 H 1.08000 * 120.00563 * 119.83815 * 12 10 9 14 14 C 1.37885 * 119.99902 * 299.83978 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.46921 * 120.63369 * 90.00555 * 6 3 2 21 21 H 1.08002 * 120.00468 * 179.97438 * 1 2 3 22 22 H 1.08004 * 120.00190 * 359.97438 * 1 2 3 23 23 H 1.08006 * 119.99702 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.58858 * 353.42594 * 7 6 3 25 25 H 1.08996 * 109.58411 * 113.84956 * 7 6 3 26 26 H 1.08999 * 109.49486 * 65.32069 * 8 7 6 27 27 H 1.08998 * 109.49330 * 185.41598 * 8 7 6 28 28 H 1.08998 * 109.46005 * 301.34854 * 9 8 7 29 29 H 1.08994 * 109.46092 * 181.38275 * 9 8 7 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.58666 * 6.57223 * 20 6 3 32 32 H 1.09000 * 109.58804 * 246.15516 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 16 2.1910 1.5259 0.0000 4 8 1.2115 2.5548 0.0348 5 8 3.1733 1.4221 -1.0216 6 7 3.0151 1.6160 1.4336 7 6 2.3955 2.2301 2.6159 8 6 3.3314 3.3167 3.1547 9 6 4.7137 2.7123 3.4119 10 6 5.2935 2.1833 2.0980 11 1 5.3601 2.9967 1.3756 12 6 6.6679 1.6175 2.3464 13 1 6.8708 0.5783 2.1334 14 6 7.6666 2.4265 2.8459 15 7 7.4197 3.6920 3.1049 16 14 9.3701 1.7249 3.1545 17 1 9.4449 1.1985 4.5411 18 1 9.6342 0.6249 2.1925 19 1 10.3854 2.7937 2.9753 20 6 4.3798 1.0839 1.5473 21 1 -0.5401 -0.9353 -0.0004 22 1 -0.5401 0.9353 0.0004 23 1 1.8499 -0.9354 -0.0004 24 1 1.4402 2.6755 2.3381 25 1 2.2381 1.4708 3.3818 26 1 3.4160 4.1198 2.4226 27 1 2.9290 3.7141 4.0865 28 1 4.6247 1.8930 4.1253 29 1 5.3747 3.4775 3.8185 30 1 8.1222 4.2610 3.4566 31 1 4.7338 0.7729 0.5643 32 1 4.3842 0.2311 2.2260 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198589085.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:06 Heat of formation + Delta-G solvation = -79.142616 kcal Electronic energy + Delta-G solvation = -16497.844878 eV Core-core repulsion = 13777.936801 eV Total energy + Delta-G solvation = -2719.908077 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.27073 -38.33893 -36.93003 -35.18588 -34.40667 -32.70935 -31.84538 -27.02410 -25.19025 -23.43682 -23.18122 -21.11645 -19.49702 -18.84727 -18.17174 -17.82138 -17.00721 -16.51653 -15.62064 -15.19419 -15.15026 -14.80623 -14.41139 -14.27290 -13.81013 -13.59541 -13.23530 -13.16001 -12.88274 -12.74812 -12.68617 -12.51274 -11.84516 -11.77027 -11.76431 -11.57544 -11.51485 -11.02796 -10.75415 -10.39684 -9.73172 -8.05731 -6.20798 -0.57999 0.46347 1.44070 1.45553 1.55403 2.04975 2.46328 2.80667 3.21215 3.36101 3.87362 4.08228 4.29832 4.36007 4.54885 4.59116 4.65270 4.83395 4.87368 4.91595 5.00461 5.11219 5.22387 5.31035 5.38778 5.56398 5.67325 5.76078 6.00761 6.19421 6.39722 6.91488 7.47299 8.98384 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040365 B = 0.006837 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.508006 B = 4094.284140 C = 4398.313176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 C -0.747 4.747 3 S 2.676 3.324 4 O -0.988 6.988 5 O -1.004 7.004 6 N -0.998 5.998 7 C 0.122 3.878 8 C -0.129 4.129 9 C -0.103 4.103 10 C 0.033 3.967 11 H -0.014 1.014 12 C -0.534 4.534 13 H 0.061 0.939 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.957 3.043 17 H -0.272 1.272 18 H -0.268 1.268 19 H -0.288 1.288 20 C 0.134 3.866 21 H 0.152 0.848 22 H 0.129 0.871 23 H 0.170 0.830 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.260 0.740 31 H 0.071 0.929 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.396 -7.626 -0.696 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.858 4.858 3 S 2.773 3.227 4 O -0.979 6.979 5 O -0.994 6.994 6 N -0.836 5.836 7 C -0.003 4.003 8 C -0.168 4.168 9 C -0.142 4.142 10 C 0.013 3.987 11 H 0.004 0.996 12 C -0.573 4.573 13 H 0.079 0.921 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.782 3.218 17 H -0.198 1.198 18 H -0.193 1.193 19 H -0.214 1.214 20 C 0.009 3.991 21 H 0.170 0.830 22 H 0.146 0.854 23 H 0.188 0.812 24 H 0.119 0.881 25 H 0.109 0.891 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.306 -6.855 -1.302 15.917 hybrid contribution 1.210 -0.567 0.317 1.373 sum -13.096 -7.421 -0.985 15.085 Atomic orbital electron populations 1.24693 0.94264 1.06238 0.78891 1.33212 1.09601 1.23889 1.19072 1.01897 0.72875 0.75656 0.72295 1.93496 1.61570 1.56213 1.86577 1.93530 1.61128 1.88150 1.56638 1.57483 1.24802 1.73660 1.27703 1.21609 0.95782 0.95824 0.87073 1.21904 0.96541 0.97653 1.00748 1.21391 0.94549 0.99921 0.98309 1.18940 0.92899 0.93169 0.93741 0.99572 1.21519 0.96016 0.96825 1.42900 0.92074 1.25754 1.02457 0.95112 0.95356 1.70042 1.34053 1.06233 1.45373 0.85582 0.79497 0.77994 0.78704 1.19763 1.19260 1.21417 1.21529 0.79179 0.97121 1.01240 0.83043 0.85354 0.81223 0.88090 0.89132 0.94430 0.89707 0.93895 0.92336 0.93123 0.91062 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 14.23 67.79 0.96 0.93 16 2 C -0.75 -16.28 10.32 67.79 0.70 -15.58 16 3 S 2.68 85.99 5.88 -56.49 -0.33 85.65 16 4 O -0.99 -33.54 15.46 -128.00 -1.98 -35.51 16 5 O -1.00 -41.07 16.61 -128.00 -2.13 -43.20 16 6 N -1.00 -34.16 3.29 -513.07 -1.69 -35.84 16 7 C 0.12 3.63 6.48 86.36 0.56 4.19 16 8 C -0.13 -4.73 6.08 30.67 0.19 -4.55 16 9 C -0.10 -4.74 4.96 30.62 0.15 -4.58 16 10 C 0.03 1.64 2.25 -11.46 -0.03 1.62 16 11 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 12 C -0.53 -29.12 8.56 25.60 0.22 -28.90 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 14 C 0.01 0.65 5.30 84.66 0.45 1.10 16 15 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 16 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 C 0.13 5.42 5.70 86.36 0.49 5.91 16 21 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 22 H 0.13 1.88 7.18 -2.91 -0.02 1.85 16 23 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 24 H 0.10 2.60 6.92 -2.39 -0.02 2.58 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 3.10 6.05 -2.39 -0.01 3.08 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.07 2.97 6.92 -2.39 -0.02 2.96 16 32 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -70.27 275.38 0.94 -69.33 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.10 Total: 7.09 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 3.70 Total: -39.86 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -1.44 Total: -88.98 kcal Atomic # 8 Polarization: -74.61 SS G_CDS: -4.10 Total: -78.71 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 85.99 SS G_CDS: -0.33 Total: 85.65 kcal Total: -70.27 0.94 -69.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198589085.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.814 kcal (2) G-P(sol) polarization free energy of solvation -70.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds