Wall clock time and date at job start Sun Mar 29 2020 22:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 S 1.76203 * 119.99799 * 2 1 4 4 O 1.42104 * 106.40146 * 1.45902 * 3 2 1 5 5 O 1.42095 * 106.40229 * 228.54159 * 3 2 1 6 6 N 1.65602 * 107.21635 * 114.99736 * 3 2 1 7 7 C 1.46498 * 119.99612 * 65.28001 * 6 3 2 8 8 H 1.08996 * 109.41451 * 24.86072 * 7 6 3 9 9 C 1.52958 * 109.41630 * 144.72320 * 7 6 3 10 10 C 1.53227 * 109.41057 * 183.70393 * 9 7 6 11 11 C 1.51271 * 108.53297 * 305.37365 * 10 9 7 12 12 C 1.37878 * 120.84741 * 231.36945 * 11 10 9 13 13 N 1.31513 * 119.99792 * 359.97438 * 12 11 10 14 14 Si 1.86800 * 119.99910 * 179.97438 * 12 11 10 15 15 H 1.48494 * 109.47321 * 89.99833 * 14 12 11 16 16 H 1.48500 * 109.46940 * 209.99908 * 14 12 11 17 17 H 1.48503 * 109.46996 * 329.99557 * 14 12 11 18 18 C 1.51269 * 118.30453 * 51.33975 * 11 10 9 19 19 C 1.52957 * 109.41080 * 265.07492 * 7 6 3 20 20 H 1.07999 * 119.99902 * 180.02562 * 1 2 3 21 21 H 1.07997 * 120.00071 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.00071 * 180.02562 * 2 1 3 23 23 H 0.97001 * 119.99942 * 244.99525 * 6 3 2 24 24 H 1.09011 * 109.47928 * 303.68363 * 9 7 6 25 25 H 1.08999 * 109.48619 * 63.70301 * 9 7 6 26 26 H 1.09003 * 109.62635 * 65.07977 * 10 9 7 27 27 H 1.08992 * 109.62823 * 185.65588 * 10 9 7 28 28 H 0.97003 * 119.99386 * 180.02562 * 13 12 11 29 29 H 1.09008 * 109.62379 * 68.36961 * 18 11 10 30 30 H 1.08999 * 109.63188 * 188.93711 * 18 11 10 31 31 H 1.09006 * 109.48328 * 296.27353 * 19 7 6 32 32 H 1.09004 * 109.48664 * 56.31708 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 16 2.1910 1.5260 0.0000 4 8 1.2114 2.5548 0.0347 5 8 3.1732 1.4223 -1.0216 6 7 3.0149 1.6163 1.4337 7 6 4.0880 0.6619 1.7230 8 1 4.4988 0.2838 0.7869 9 6 5.1920 1.3632 2.5162 10 6 6.3552 0.3909 2.7389 11 6 5.8162 -0.8615 3.3942 12 6 6.3950 -1.3650 4.5399 13 7 7.4296 -0.7555 5.0764 14 14 5.7098 -2.9128 5.3298 15 1 6.3915 -4.1027 4.7603 16 1 5.9411 -2.8643 6.7959 17 1 4.2519 -3.0017 5.0614 18 6 4.6257 -1.5469 2.7610 19 6 3.5253 -0.5042 2.5373 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 2.7898 2.3037 2.0800 24 1 5.5451 2.2308 1.9586 25 1 4.7983 1.6861 3.4799 26 1 6.8084 0.1366 1.7807 27 1 7.0992 0.8526 3.3879 28 1 7.8370 -1.1100 5.8822 29 1 4.9188 -1.9806 1.8048 30 1 4.2586 -2.3302 3.4241 31 1 3.1710 -0.1374 3.5007 32 1 2.6971 -0.9603 1.9949 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198627544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:13 Heat of formation + Delta-G solvation = -68.998031 kcal Electronic energy + Delta-G solvation = -16367.903770 eV Core-core repulsion = 13648.435596 eV Total energy + Delta-G solvation = -2719.468174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.62406 -36.96000 -35.70080 -33.72877 -33.54914 -31.30130 -29.71065 -26.92053 -22.60739 -22.09040 -21.46954 -19.68388 -18.87251 -17.69743 -16.80513 -16.20596 -15.73258 -14.73754 -14.51149 -14.32713 -13.34920 -13.01782 -12.71139 -12.48425 -12.42979 -12.25960 -11.96700 -11.85024 -11.50325 -11.13008 -11.00158 -10.77916 -10.63091 -10.57936 -10.28473 -10.03325 -9.71897 -9.23727 -8.97917 -8.56975 -8.46840 -6.15029 -4.06471 0.59597 1.34472 3.22442 3.25353 3.30360 3.31757 3.84228 4.32828 4.58295 4.90843 5.10661 5.23865 5.39634 5.72932 5.76403 5.95653 6.01529 6.11030 6.41195 6.50257 6.68241 6.74812 6.96126 6.98301 7.08554 7.27610 7.37877 7.60073 7.70023 7.79272 8.32847 8.91579 9.48866 10.94340 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.038759 B = 0.006900 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.235334 B = 4056.964537 C = 4512.747357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.734 4.734 3 S 2.680 3.320 4 O -0.978 6.978 5 O -0.962 6.962 6 N -1.110 6.110 7 C 0.154 3.846 8 H 0.084 0.916 9 C -0.109 4.109 10 C 0.009 3.991 11 C -0.490 4.490 12 C 0.076 3.924 13 N -0.888 5.888 14 Si 0.887 3.113 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.265 1.265 18 C -0.022 4.022 19 C -0.126 4.126 20 H 0.111 0.889 21 H 0.122 0.878 22 H 0.160 0.840 23 H 0.415 0.585 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.008 0.992 27 H 0.061 0.939 28 H 0.265 0.735 29 H 0.020 0.980 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 1.503 -5.849 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.840 4.840 3 S 2.769 3.231 4 O -0.968 6.968 5 O -0.952 6.952 6 N -0.870 5.870 7 C 0.049 3.951 8 H 0.102 0.898 9 C -0.149 4.149 10 C -0.029 4.029 11 C -0.509 4.509 12 C -0.127 4.127 13 N -0.526 5.526 14 Si 0.715 3.285 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.190 1.190 18 C -0.060 4.060 19 C -0.165 4.165 20 H 0.129 0.871 21 H 0.140 0.860 22 H 0.178 0.822 23 H 0.249 0.751 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.229 1.953 -6.508 13.125 hybrid contribution -0.691 -1.418 1.165 1.961 sum -11.920 0.535 -5.342 13.073 Atomic orbital electron populations 1.24193 0.95156 1.03979 0.83436 1.33708 1.08967 1.26331 1.14982 1.02112 0.73420 0.74048 0.73507 1.93552 1.61359 1.55091 1.86798 1.93599 1.59284 1.86849 1.55448 1.55622 1.49049 1.44030 1.38314 1.20978 0.86279 0.88272 0.99564 0.89837 1.21892 0.96816 0.98088 0.98057 1.19397 0.93487 0.93455 0.96549 1.20036 1.12213 1.09573 1.09061 1.24852 0.94738 0.96810 0.96257 1.69833 1.22021 1.39574 1.21124 0.86685 0.79756 0.83715 0.78303 1.20401 1.21646 1.19028 1.19827 0.93995 0.94564 0.97592 1.22143 0.98175 0.96852 0.99337 0.87054 0.86016 0.82181 0.75120 0.94151 0.92508 0.97338 0.92010 0.92534 0.96205 0.94423 0.92143 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.29 14.23 29.01 0.41 0.12 16 2 C -0.73 -9.03 9.30 29.01 0.27 -8.76 16 3 S 2.68 39.01 5.87 -107.50 -0.63 38.38 16 4 O -0.98 -15.33 16.87 -57.17 -0.96 -16.29 16 5 O -0.96 -17.36 17.34 -57.17 -0.99 -18.36 16 6 N -1.11 -16.37 5.47 -4.93 -0.03 -16.40 16 7 C 0.15 2.77 2.69 -67.98 -0.18 2.59 16 8 H 0.08 1.55 7.49 -51.93 -0.39 1.16 16 9 C -0.11 -2.17 5.46 -26.64 -0.15 -2.31 16 10 C 0.01 0.22 5.97 -27.49 -0.16 0.06 16 11 C -0.49 -12.32 5.51 -98.92 -0.55 -12.87 16 12 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 13 N -0.89 -24.80 12.73 55.43 0.71 -24.10 16 14 Si 0.89 20.31 27.53 -169.99 -4.68 15.63 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.26 -5.81 6.10 56.52 0.35 -5.46 16 18 C -0.02 -0.47 5.59 -27.48 -0.15 -0.63 16 19 C -0.13 -2.33 5.54 -26.63 -0.15 -2.47 16 20 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 21 H 0.12 1.11 7.18 -52.49 -0.38 0.74 16 22 H 0.16 1.92 7.51 -52.49 -0.39 1.53 16 23 H 0.41 5.28 8.83 -34.47 -0.30 4.97 16 24 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.04 0.82 4.59 -51.93 -0.24 0.58 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.03 0.55 6.49 -51.93 -0.34 0.21 16 LS Contribution 272.13 15.07 4.10 4.10 Total: -1.00 -30.68 272.13 -7.38 -38.05 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.13 Total: 1.34 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.75 Total: -22.35 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.68 Total: -40.50 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.96 Total: -34.65 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.68 Total: 15.63 kcal Atomic # 16 Polarization: 39.01 SS G_CDS: -0.63 Total: 38.38 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.68 -7.38 -38.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198627544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.944 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds