Wall clock time and date at job start Sun Mar 29 2020 22:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 S 1.76203 * 119.99799 * 2 1 4 4 O 1.42104 * 106.40146 * 1.45902 * 3 2 1 5 5 O 1.42095 * 106.40229 * 228.54159 * 3 2 1 6 6 N 1.65602 * 107.21635 * 114.99736 * 3 2 1 7 7 C 1.46498 * 119.99612 * 65.28001 * 6 3 2 8 8 H 1.08996 * 109.41451 * 24.86072 * 7 6 3 9 9 C 1.52958 * 109.41630 * 144.72320 * 7 6 3 10 10 C 1.53227 * 109.41057 * 183.70393 * 9 7 6 11 11 C 1.51271 * 108.53297 * 305.37365 * 10 9 7 12 12 C 1.37878 * 120.84741 * 231.36945 * 11 10 9 13 13 N 1.31513 * 119.99792 * 359.97438 * 12 11 10 14 14 Si 1.86800 * 119.99910 * 179.97438 * 12 11 10 15 15 H 1.48494 * 109.47321 * 89.99833 * 14 12 11 16 16 H 1.48500 * 109.46940 * 209.99908 * 14 12 11 17 17 H 1.48503 * 109.46996 * 329.99557 * 14 12 11 18 18 C 1.51269 * 118.30453 * 51.33975 * 11 10 9 19 19 C 1.52957 * 109.41080 * 265.07492 * 7 6 3 20 20 H 1.07999 * 119.99902 * 180.02562 * 1 2 3 21 21 H 1.07997 * 120.00071 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.00071 * 180.02562 * 2 1 3 23 23 H 0.97001 * 119.99942 * 244.99525 * 6 3 2 24 24 H 1.09011 * 109.47928 * 303.68363 * 9 7 6 25 25 H 1.08999 * 109.48619 * 63.70301 * 9 7 6 26 26 H 1.09003 * 109.62635 * 65.07977 * 10 9 7 27 27 H 1.08992 * 109.62823 * 185.65588 * 10 9 7 28 28 H 0.97003 * 119.99386 * 180.02562 * 13 12 11 29 29 H 1.09008 * 109.62379 * 68.36961 * 18 11 10 30 30 H 1.08999 * 109.63188 * 188.93711 * 18 11 10 31 31 H 1.09006 * 109.48328 * 296.27353 * 19 7 6 32 32 H 1.09004 * 109.48664 * 56.31708 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 16 2.1910 1.5260 0.0000 4 8 1.2114 2.5548 0.0347 5 8 3.1732 1.4223 -1.0216 6 7 3.0149 1.6163 1.4337 7 6 4.0880 0.6619 1.7230 8 1 4.4988 0.2838 0.7869 9 6 5.1920 1.3632 2.5162 10 6 6.3552 0.3909 2.7389 11 6 5.8162 -0.8615 3.3942 12 6 6.3950 -1.3650 4.5399 13 7 7.4296 -0.7555 5.0764 14 14 5.7098 -2.9128 5.3298 15 1 6.3915 -4.1027 4.7603 16 1 5.9411 -2.8643 6.7959 17 1 4.2519 -3.0017 5.0614 18 6 4.6257 -1.5469 2.7610 19 6 3.5253 -0.5042 2.5373 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8500 -0.9353 -0.0004 23 1 2.7898 2.3037 2.0800 24 1 5.5451 2.2308 1.9586 25 1 4.7983 1.6861 3.4799 26 1 6.8084 0.1366 1.7807 27 1 7.0992 0.8526 3.3879 28 1 7.8370 -1.1100 5.8822 29 1 4.9188 -1.9806 1.8048 30 1 4.2586 -2.3302 3.4241 31 1 3.1710 -0.1374 3.5007 32 1 2.6971 -0.9603 1.9949 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198627544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:12 Heat of formation + Delta-G solvation = -91.960520 kcal Electronic energy + Delta-G solvation = -16368.899498 eV Core-core repulsion = 13648.435596 eV Total energy + Delta-G solvation = -2720.463903 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.15518 -38.21092 -36.93698 -35.38629 -34.41397 -33.01658 -31.41129 -28.60694 -23.93830 -23.58792 -22.99793 -21.27037 -20.05121 -18.90102 -18.02283 -17.71150 -17.13663 -16.37387 -15.99701 -15.29631 -15.01843 -14.57584 -14.25571 -14.02453 -13.95246 -13.57066 -13.21787 -13.11363 -13.10424 -12.75210 -12.71667 -12.33036 -11.90358 -11.84794 -11.71220 -11.51856 -11.36172 -10.86479 -10.70681 -10.51973 -10.07621 -8.12994 -6.07527 -0.51975 0.49167 1.42433 1.44413 1.52503 2.10861 2.44001 2.75196 3.14619 3.46073 3.96156 4.10846 4.20907 4.45733 4.55941 4.59388 4.80285 4.91029 4.98356 5.04442 5.11484 5.26467 5.29466 5.31789 5.50123 5.64775 5.69965 5.80665 5.86904 6.19923 6.38959 6.99695 7.50395 8.97882 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.038759 B = 0.006900 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.235334 B = 4056.964537 C = 4512.747357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 C -0.753 4.753 3 S 2.692 3.308 4 O -0.990 6.990 5 O -1.003 7.003 6 N -1.106 6.106 7 C 0.163 3.837 8 H 0.078 0.922 9 C -0.103 4.103 10 C 0.003 3.997 11 C -0.498 4.498 12 C 0.019 3.981 13 N -0.934 5.934 14 Si 0.941 3.059 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.243 1.243 18 C -0.027 4.027 19 C -0.122 4.122 20 H 0.146 0.854 21 H 0.130 0.870 22 H 0.167 0.833 23 H 0.424 0.576 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.001 0.999 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.433 0.548 -6.471 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.864 4.864 3 S 2.786 3.214 4 O -0.981 6.981 5 O -0.993 6.993 6 N -0.865 5.865 7 C 0.057 3.943 8 H 0.096 0.904 9 C -0.143 4.143 10 C -0.035 4.035 11 C -0.518 4.518 12 C -0.179 4.179 13 N -0.574 5.574 14 Si 0.767 3.233 15 H -0.204 1.204 16 H -0.223 1.223 17 H -0.167 1.167 18 C -0.066 4.066 19 C -0.161 4.161 20 H 0.164 0.836 21 H 0.148 0.852 22 H 0.185 0.815 23 H 0.260 0.740 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.258 1.041 -7.138 15.979 hybrid contribution 0.182 -1.087 1.273 1.683 sum -14.076 -0.046 -5.865 15.249 Atomic orbital electron populations 1.24642 0.94377 1.06068 0.79033 1.33259 1.09701 1.24379 1.19015 1.01436 0.72833 0.74684 0.72468 1.93532 1.61255 1.56531 1.86772 1.93549 1.61069 1.87744 1.56912 1.55355 1.48670 1.43937 1.38566 1.20652 0.86358 0.88499 0.98814 0.90356 1.21723 0.96202 0.97624 0.98715 1.19368 0.94409 0.94436 0.95291 1.20688 1.12800 1.09567 1.08699 1.25653 0.95170 0.99675 0.97402 1.69987 1.23977 1.41546 1.21868 0.85812 0.80337 0.80256 0.76887 1.20371 1.22332 1.16671 1.19880 0.93741 0.95413 0.97523 1.22065 0.98003 0.96076 0.99981 0.83621 0.85216 0.81526 0.74006 0.92987 0.92657 0.98085 0.95351 0.92961 0.95602 0.94050 0.92172 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 14.23 67.78 0.96 0.93 16 2 C -0.75 -15.72 9.30 67.78 0.63 -15.09 16 3 S 2.69 72.73 5.87 -56.49 -0.33 72.40 16 4 O -0.99 -28.85 16.87 -128.00 -2.16 -31.01 16 5 O -1.00 -35.16 17.34 -128.00 -2.22 -37.38 16 6 N -1.11 -30.27 5.47 -169.51 -0.93 -31.20 16 7 C 0.16 5.58 2.69 44.96 0.12 5.70 16 8 H 0.08 2.79 7.49 -2.39 -0.02 2.77 16 9 C -0.10 -4.07 5.46 30.66 0.17 -3.90 16 10 C 0.00 0.16 5.97 30.11 0.18 0.34 16 11 C -0.50 -25.08 5.51 -16.17 -0.09 -25.17 16 12 C 0.02 1.01 5.46 84.66 0.46 1.47 16 13 N -0.93 -53.93 12.73 21.45 0.27 -53.66 16 14 Si 0.94 41.42 27.53 68.60 1.89 43.31 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.30 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.24 -9.70 6.10 99.48 0.61 -9.10 16 18 C -0.03 -1.14 5.59 30.11 0.17 -0.97 16 19 C -0.12 -4.16 5.54 30.66 0.17 -3.99 16 20 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 21 H 0.13 1.79 7.18 -2.91 -0.02 1.76 16 22 H 0.17 3.32 7.51 -2.91 -0.02 3.30 16 23 H 0.42 9.90 8.83 -96.74 -0.85 9.05 16 24 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.03 1.54 7.07 -2.39 -0.02 1.52 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.04 1.68 4.59 -2.39 -0.01 1.67 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.07 1.93 6.49 -2.39 -0.02 1.91 16 Total: -1.00 -66.71 272.13 -0.53 -67.24 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.17 Total: 10.99 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 2.77 Total: -40.69 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -0.65 Total: -84.86 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -4.38 Total: -68.39 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.89 Total: 43.31 kcal Atomic # 16 Polarization: 72.73 SS G_CDS: -0.33 Total: 72.40 kcal Total: -66.71 -0.53 -67.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198627544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.719 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds