Wall clock time and date at job start Sun Mar 29 2020 22:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86806 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47439 * 240.00181 * 3 2 1 5 5 H 1.48507 * 109.46666 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47029 * 119.99573 * 3 2 1 7 7 C 1.38645 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99938 * 180.02562 * 7 2 1 9 9 O 1.34810 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.35779 * 116.99669 * 185.05575 * 9 7 2 11 11 C 1.38898 * 120.00403 * 354.46419 * 10 9 7 12 12 C 1.38010 * 119.99429 * 180.02562 * 11 10 9 13 13 C 1.38864 * 120.00521 * 359.97438 * 12 11 10 14 14 N 1.40295 * 119.99806 * 179.97438 * 13 12 11 15 15 C 1.36404 * 126.49382 * 309.68755 * 14 13 12 16 16 N 1.30411 * 108.65422 * 180.26170 * 15 14 13 17 17 C 1.34251 * 109.45832 * 359.97438 * 16 15 14 18 18 C 1.35418 * 108.15972 * 359.97438 * 17 16 15 19 19 N 1.39583 * 126.64126 * 180.02562 * 18 17 16 20 20 C 1.38865 * 120.00840 * 0.25585 * 13 12 11 21 21 C 1.38005 * 120.00461 * 359.48777 * 20 13 12 22 22 H 0.96998 * 120.00401 * 0.02562 * 1 2 3 23 23 H 1.08004 * 120.00274 * 359.97438 * 11 10 9 24 24 H 1.08006 * 119.99815 * 180.02562 * 12 11 10 25 25 H 1.07995 * 125.67330 * 0.28501 * 15 14 13 26 26 H 1.07995 * 125.91546 * 179.97438 * 17 16 15 27 27 H 0.97001 * 120.00408 * 180.02562 * 19 18 17 28 28 H 0.97004 * 119.99569 * 359.97438 * 19 18 17 29 29 H 1.07998 * 119.99909 * 179.74512 * 20 13 12 30 30 H 1.07997 * 120.00440 * 180.27474 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0703 -3.5045 0.1055 11 6 3.4576 -3.4378 0.0919 12 6 4.2050 -4.5931 0.1992 13 6 3.5701 -5.8220 0.3213 14 7 4.3300 -6.9964 0.4299 15 6 5.3530 -7.3791 -0.3872 16 7 5.8091 -8.5288 0.0260 17 6 5.1134 -8.9247 1.1038 18 6 4.1821 -7.9798 1.3754 19 7 3.2514 -8.0023 2.4154 20 6 2.1831 -5.8894 0.3302 21 6 1.4354 -4.7339 0.2283 22 1 -0.4851 0.8400 -0.0004 23 1 3.9514 -2.4820 -0.0036 24 1 5.2838 -4.5412 0.1890 25 1 5.7239 -6.8224 -1.2350 26 1 5.2694 -9.8384 1.6579 27 1 2.6244 -7.2698 2.5211 28 1 3.2311 -8.7509 3.0320 29 1 1.6895 -6.8457 0.4211 30 1 0.3568 -4.7859 0.2396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212606060.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:23 Heat of formation + Delta-G solvation = 67.456768 kcal Electronic energy + Delta-G solvation = -16572.379163 eV Core-core repulsion = 13755.676913 eV Total energy + Delta-G solvation = -2816.702251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.80040 -39.20086 -36.85395 -34.28491 -33.08800 -32.24376 -30.55808 -28.03072 -27.38672 -25.55231 -22.68535 -22.32419 -20.86452 -20.19951 -18.33934 -18.03879 -16.91645 -16.28403 -15.36438 -15.18418 -14.74623 -14.31272 -14.15695 -13.86359 -13.64200 -13.21390 -13.01905 -12.80280 -11.93474 -11.75995 -11.63728 -11.12371 -11.01942 -10.78239 -10.61069 -9.85724 -9.77094 -9.42110 -8.94781 -8.58647 -7.40701 -7.16969 -6.66997 -4.25495 1.69952 1.85436 2.63490 2.90904 3.01855 3.02748 3.05932 3.46017 3.79317 4.09566 4.20892 4.85956 4.97962 5.07256 5.30907 5.36762 5.43876 5.72908 5.86494 5.94220 6.16448 6.30371 6.47864 6.59269 6.76892 6.87183 6.98211 7.14001 7.28693 7.40608 7.76029 7.81090 7.90045 8.42554 8.77347 9.41405 10.49532 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048681 B = 0.004839 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.031546 B = 5785.414766 C = 6114.715241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.396 4.396 8 H 0.095 0.905 9 O -0.164 6.164 10 C 0.157 3.843 11 C -0.220 4.220 12 C -0.057 4.057 13 C 0.000 4.000 14 N -0.411 5.411 15 C 0.158 3.842 16 N -0.471 5.471 17 C -0.121 4.121 18 C 0.275 3.725 19 N -0.862 5.862 20 C -0.071 4.071 21 C -0.177 4.177 22 H 0.274 0.726 23 H 0.137 0.863 24 H 0.117 0.883 25 H 0.202 0.798 26 H 0.161 0.839 27 H 0.398 0.602 28 H 0.411 0.589 29 H 0.117 0.883 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -8.536 2.696 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.472 4.472 8 H 0.113 0.887 9 O -0.066 6.066 10 C 0.101 3.899 11 C -0.240 4.240 12 C -0.077 4.077 13 C -0.090 4.090 14 N -0.098 5.098 15 C -0.122 4.122 16 N -0.189 5.189 17 C -0.271 4.271 18 C 0.060 3.940 19 N -0.411 5.411 20 C -0.091 4.091 21 C -0.197 4.197 22 H 0.084 0.916 23 H 0.155 0.845 24 H 0.135 0.865 25 H 0.218 0.782 26 H 0.179 0.821 27 H 0.227 0.773 28 H 0.241 0.759 29 H 0.135 0.865 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.187 -8.661 2.230 10.339 hybrid contribution -0.477 1.306 0.646 1.533 sum 4.710 -7.355 2.877 9.195 Atomic orbital electron populations 1.70020 1.06087 1.28342 1.44236 1.25360 0.95898 0.99078 0.95979 0.85729 0.78774 0.79300 0.79416 1.19255 1.20071 1.19288 1.21356 0.91965 0.80573 1.53304 0.88729 1.83981 1.34510 1.11573 1.76522 1.19430 0.90242 0.88148 0.92081 1.21060 0.93625 0.98601 1.10750 1.20632 0.99039 0.90370 0.97673 1.17208 0.90064 0.84035 1.17739 1.42629 1.28427 1.15699 1.23024 1.24756 0.92040 0.95576 0.99857 1.70042 1.26570 1.10525 1.11718 1.21383 1.00910 1.02284 1.02492 1.18257 0.95574 0.91274 0.88886 1.41399 1.39347 1.28105 1.32299 1.20488 0.91395 0.97668 0.99526 1.20071 0.99844 0.89588 1.10218 0.91565 0.84545 0.86508 0.78189 0.82120 0.77270 0.75880 0.86484 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.55 13.67 55.48 0.76 -22.79 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.18 29.55 -169.99 -5.02 14.16 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.40 -10.27 9.48 30.88 0.29 -9.98 16 8 H 0.10 2.23 5.20 -52.49 -0.27 1.96 16 9 O -0.16 -4.32 9.76 0.02 0.00 -4.32 16 10 C 0.16 3.44 6.65 -39.09 -0.26 3.18 16 11 C -0.22 -4.33 9.16 -39.42 -0.36 -4.69 16 12 C -0.06 -0.99 9.69 -39.43 -0.38 -1.37 16 13 C 0.00 0.01 5.90 -83.52 -0.49 -0.49 16 14 N -0.41 -6.58 2.90 -60.99 -0.18 -6.76 16 15 C 0.16 2.48 12.33 -89.19 -1.10 1.38 16 16 N -0.47 -7.86 11.24 -14.16 -0.16 -8.01 16 17 C -0.12 -1.83 11.89 -17.50 -0.21 -2.04 16 18 C 0.27 4.09 7.82 -151.50 -1.18 2.90 16 19 N -0.86 -9.94 9.07 31.41 0.28 -9.66 16 20 C -0.07 -1.18 8.62 -39.43 -0.34 -1.52 16 21 C -0.18 -3.36 9.99 -39.42 -0.39 -3.76 16 22 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 23 H 0.14 2.65 5.63 -52.48 -0.30 2.36 16 24 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 25 H 0.20 2.57 8.06 -52.49 -0.42 2.14 16 26 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.40 4.65 7.64 -40.82 -0.31 4.34 16 28 H 0.41 3.49 8.96 -40.82 -0.37 3.13 16 29 H 0.12 1.74 7.98 -52.49 -0.42 1.32 16 30 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -29.63 270.46 -7.25 -36.89 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -2.49 Total: 11.80 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -4.52 Total: -15.38 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.71 Total: -47.22 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: 0.00 Total: -4.32 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.63 -7.25 -36.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606060.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.344 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds