Wall clock time and date at job start Sun Mar 29 2020 22:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86806 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47439 * 240.00181 * 3 2 1 5 5 H 1.48507 * 109.46666 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47029 * 119.99573 * 3 2 1 7 7 C 1.38645 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99938 * 180.02562 * 7 2 1 9 9 O 1.34810 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.35779 * 116.99669 * 185.05575 * 9 7 2 11 11 C 1.38898 * 120.00403 * 354.46419 * 10 9 7 12 12 C 1.38010 * 119.99429 * 180.02562 * 11 10 9 13 13 C 1.38864 * 120.00521 * 359.97438 * 12 11 10 14 14 N 1.40295 * 119.99806 * 179.97438 * 13 12 11 15 15 C 1.36404 * 126.49382 * 309.68755 * 14 13 12 16 16 N 1.30411 * 108.65422 * 180.26170 * 15 14 13 17 17 C 1.34251 * 109.45832 * 359.97438 * 16 15 14 18 18 C 1.35418 * 108.15972 * 359.97438 * 17 16 15 19 19 N 1.39583 * 126.64126 * 180.02562 * 18 17 16 20 20 C 1.38865 * 120.00840 * 0.25585 * 13 12 11 21 21 C 1.38005 * 120.00461 * 359.48777 * 20 13 12 22 22 H 0.96998 * 120.00401 * 0.02562 * 1 2 3 23 23 H 1.08004 * 120.00274 * 359.97438 * 11 10 9 24 24 H 1.08006 * 119.99815 * 180.02562 * 12 11 10 25 25 H 1.07995 * 125.67330 * 0.28501 * 15 14 13 26 26 H 1.07995 * 125.91546 * 179.97438 * 17 16 15 27 27 H 0.97001 * 120.00408 * 180.02562 * 19 18 17 28 28 H 0.97004 * 119.99569 * 359.97438 * 19 18 17 29 29 H 1.07998 * 119.99909 * 179.74512 * 20 13 12 30 30 H 1.07997 * 120.00440 * 180.27474 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2006 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0703 -3.5045 0.1055 11 6 3.4576 -3.4378 0.0919 12 6 4.2050 -4.5931 0.1992 13 6 3.5701 -5.8220 0.3213 14 7 4.3300 -6.9964 0.4299 15 6 5.3530 -7.3791 -0.3872 16 7 5.8091 -8.5288 0.0260 17 6 5.1134 -8.9247 1.1038 18 6 4.1821 -7.9798 1.3754 19 7 3.2514 -8.0023 2.4154 20 6 2.1831 -5.8894 0.3302 21 6 1.4354 -4.7339 0.2283 22 1 -0.4851 0.8400 -0.0004 23 1 3.9514 -2.4820 -0.0036 24 1 5.2838 -4.5412 0.1890 25 1 5.7239 -6.8224 -1.2350 26 1 5.2694 -9.8384 1.6579 27 1 2.6244 -7.2698 2.5211 28 1 3.2311 -8.7509 3.0320 29 1 1.6895 -6.8457 0.4211 30 1 0.3568 -4.7859 0.2396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212606060.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:23 Heat of formation + Delta-G solvation = 50.175320 kcal Electronic energy + Delta-G solvation = -16573.128543 eV Core-core repulsion = 13755.676913 eV Total energy + Delta-G solvation = -2817.451630 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.02826 -40.81183 -38.44447 -35.37054 -34.62734 -33.87997 -32.05567 -29.50622 -28.54207 -27.35263 -24.12672 -23.80661 -22.11290 -21.48839 -20.01112 -19.42154 -18.57627 -17.29779 -16.79728 -16.41404 -16.30241 -15.77615 -15.63505 -15.51766 -14.98547 -14.67085 -14.30699 -14.24129 -13.60411 -13.28799 -13.15610 -12.66959 -12.57479 -12.16897 -11.86939 -11.41661 -11.14669 -10.90571 -10.59201 -10.05362 -8.98491 -8.51601 -8.27024 -6.19562 0.23283 0.35834 1.37070 1.37594 1.48077 1.52587 1.68216 2.15457 2.27472 2.64654 3.02462 3.05870 3.36281 3.89771 3.92329 3.99150 4.21671 4.32081 4.45084 4.66591 4.75994 4.93579 5.01500 5.10268 5.26101 5.45811 5.49939 5.62477 5.85240 5.94895 6.22798 6.67753 6.91723 6.92840 7.26205 7.66711 8.69959 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048681 B = 0.004839 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.031546 B = 5785.414766 C = 6114.715241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.016 4.016 3 Si 1.016 2.984 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.108 0.892 9 O -0.218 6.218 10 C 0.127 3.873 11 C -0.220 4.220 12 C -0.054 4.054 13 C 0.027 3.973 14 N -0.422 5.422 15 C 0.151 3.849 16 N -0.491 5.491 17 C -0.133 4.133 18 C 0.272 3.728 19 N -0.849 5.849 20 C -0.060 4.060 21 C -0.178 4.178 22 H 0.275 0.725 23 H 0.135 0.865 24 H 0.144 0.856 25 H 0.224 0.776 26 H 0.183 0.817 27 H 0.400 0.600 28 H 0.426 0.574 29 H 0.143 0.857 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 -10.042 3.143 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.215 4.215 3 Si 0.835 3.165 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.125 0.875 9 O -0.123 6.123 10 C 0.074 3.926 11 C -0.240 4.240 12 C -0.073 4.073 13 C -0.064 4.064 14 N -0.111 5.111 15 C -0.129 4.129 16 N -0.208 5.208 17 C -0.282 4.282 18 C 0.058 3.942 19 N -0.400 5.400 20 C -0.079 4.079 21 C -0.198 4.198 22 H 0.084 0.916 23 H 0.152 0.848 24 H 0.161 0.839 25 H 0.240 0.760 26 H 0.200 0.800 27 H 0.229 0.771 28 H 0.259 0.741 29 H 0.160 0.840 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.082 -10.258 2.708 12.756 hybrid contribution -0.899 1.325 0.552 1.694 sum 6.183 -8.933 3.260 11.343 Atomic orbital electron populations 1.70159 1.08024 1.29149 1.47721 1.26559 0.96774 1.02718 0.95483 0.84672 0.77451 0.74314 0.80022 1.18062 1.19846 1.18134 1.21833 0.92745 0.81123 1.53551 0.87495 1.83963 1.35885 1.12565 1.79859 1.19943 0.91413 0.88086 0.93117 1.21138 0.92912 0.99584 1.10376 1.20836 1.00273 0.89541 0.96680 1.17334 0.90231 0.84473 1.14391 1.42700 1.28824 1.15591 1.23953 1.25283 0.91645 0.95638 1.00313 1.70053 1.27187 1.11091 1.12493 1.21796 1.00837 1.03172 1.02407 1.18504 0.95944 0.90663 0.89130 1.41428 1.38323 1.28688 1.31600 1.20664 0.91373 0.97788 0.98107 1.20263 1.00451 0.89380 1.09657 0.91631 0.84754 0.83867 0.76018 0.80015 0.77119 0.74093 0.83965 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.90 13.67 21.61 0.30 -52.60 16 2 C -0.02 -0.87 5.49 84.83 0.47 -0.40 16 3 Si 1.02 39.97 29.55 68.60 2.03 42.00 16 4 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.42 -22.35 9.48 67.92 0.64 -21.71 16 8 H 0.11 5.16 5.20 -2.91 -0.02 5.14 16 9 O -0.22 -11.95 9.76 -22.85 -0.22 -12.17 16 10 C 0.13 5.61 6.65 22.59 0.15 5.76 16 11 C -0.22 -8.49 9.16 22.37 0.20 -8.28 16 12 C -0.05 -1.71 9.69 22.37 0.22 -1.49 16 13 C 0.03 0.82 5.90 38.09 0.22 1.04 16 14 N -0.42 -12.05 2.90 -346.87 -1.01 -13.05 16 15 C 0.15 4.25 12.33 179.85 2.22 6.47 16 16 N -0.49 -14.93 11.24 -198.70 -2.23 -17.17 16 17 C -0.13 -3.60 11.89 83.67 0.99 -2.61 16 18 C 0.27 7.15 7.82 130.50 1.02 8.17 16 19 N -0.85 -16.60 9.07 -54.53 -0.49 -17.09 16 20 C -0.06 -1.83 8.62 22.36 0.19 -1.64 16 21 C -0.18 -6.62 9.99 22.38 0.22 -6.40 16 22 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 23 H 0.13 5.19 5.63 -2.91 -0.02 5.17 16 24 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 25 H 0.22 4.93 8.06 -2.91 -0.02 4.90 16 26 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 27 H 0.40 7.95 7.64 -92.71 -0.71 7.24 16 28 H 0.43 5.73 8.96 -92.71 -0.83 4.90 16 29 H 0.14 3.69 7.98 -2.91 -0.02 3.67 16 30 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -65.81 270.46 4.58 -61.23 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.34 Total: 29.95 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 6.56 Total: -21.10 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -3.44 Total: -99.91 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.22 Total: -12.17 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -65.81 4.58 -61.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606060.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.404 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds