Wall clock time and date at job start Sun Mar 29 2020 23:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35541 * 116.99650 * 2 1 4 4 C 1.39120 * 120.48625 * 359.97438 * 3 2 1 5 5 C 1.38318 * 118.63938 * 179.97438 * 4 3 2 6 6 C 1.40093 * 119.57042 * 359.97438 * 5 4 3 7 7 C 1.48253 * 119.51420 * 179.97438 * 6 5 4 8 8 C 1.40922 * 126.04626 * 179.97438 * 7 6 5 9 9 C 1.35039 * 107.85458 * 179.73276 * 8 7 6 10 10 N 1.35082 * 108.00115 * 0.02562 * 9 8 7 11 11 H 0.96998 * 125.92820 * 179.97438 * 10 9 8 12 12 N 1.31710 * 126.05210 * 359.68983 * 7 6 5 13 13 N 1.32172 * 120.96429 * 0.25807 * 6 5 4 14 14 C 1.33600 * 121.45862 * 359.47703 * 13 6 5 15 15 C 1.40989 * 119.83633 * 180.26676 * 14 13 6 16 16 H 1.07990 * 120.00305 * 173.90683 * 15 14 13 17 17 C 1.40021 * 119.99524 * 353.91335 * 15 14 13 18 18 N 1.30773 * 120.00434 * 6.33578 * 17 15 14 19 19 Si 1.86803 * 119.99618 * 186.33343 * 17 15 14 20 20 H 1.48510 * 109.47045 * 94.98674 * 19 17 15 21 21 H 1.48501 * 109.47206 * 214.98267 * 19 17 15 22 22 H 1.48498 * 109.47159 * 334.98735 * 19 17 15 23 23 H 1.09001 * 109.47137 * 300.00636 * 1 2 3 24 24 H 1.09006 * 109.46509 * 60.00485 * 1 2 3 25 25 H 1.08990 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.68129 * 359.95664 * 4 3 2 27 27 H 1.07997 * 120.21136 * 180.02562 * 5 4 3 28 28 H 1.07998 * 126.07040 * 359.71979 * 8 7 6 29 29 H 1.07994 * 126.00245 * 180.02562 * 9 8 7 30 30 H 0.97002 * 120.00317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2965 2.3808 -0.0005 5 6 1.9638 3.5924 0.0000 6 6 3.3646 3.6102 0.0017 7 6 4.0785 4.9095 0.0017 8 6 5.4764 5.0876 0.0037 9 6 5.7247 6.4149 -0.0030 10 7 4.5387 7.0614 -0.0085 11 1 4.4149 8.0235 -0.0136 12 7 3.5185 6.1016 -0.0055 13 7 4.0589 2.4855 -0.0024 14 6 3.4556 1.2936 0.0021 15 6 4.2299 0.1154 0.0032 16 1 3.7497 -0.8464 0.1062 17 6 5.6218 0.1924 -0.1290 18 7 6.2152 1.3577 -0.1290 19 14 6.6309 -1.3697 -0.3055 20 1 6.8645 -1.6480 -1.7455 21 1 7.9352 -1.1968 0.3831 22 1 5.8954 -2.5059 0.3053 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 0.2170 2.3462 -0.0017 27 1 1.4084 4.5186 0.0000 28 1 6.2175 4.3020 0.0098 29 1 6.7002 6.8782 -0.0038 30 1 7.1794 1.4110 -0.2210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245314582.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:33 Heat of formation + Delta-G solvation = 74.755836 kcal Electronic energy + Delta-G solvation = -16953.355783 eV Core-core repulsion = 14136.970043 eV Total energy + Delta-G solvation = -2816.385739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37232 -38.80376 -36.61852 -33.68345 -31.46401 -30.43087 -29.30594 -28.93381 -26.57476 -25.53027 -22.41521 -21.62527 -20.36491 -19.09919 -17.59305 -17.32893 -16.63250 -15.54760 -14.79067 -14.74151 -14.28725 -14.00871 -13.05602 -12.97994 -12.72600 -12.62751 -12.32487 -12.19456 -11.25049 -11.24393 -11.18399 -10.61814 -10.49184 -10.45773 -10.11032 -9.82900 -9.46407 -8.88608 -8.15433 -8.08405 -7.73439 -6.96987 -6.40527 -4.36017 2.10222 2.74505 2.88270 3.13955 3.18670 3.19280 3.39969 3.84032 4.00751 4.42350 4.84441 5.21853 5.39832 5.72711 5.73951 5.88219 5.91206 6.00865 6.19740 6.30858 6.41054 6.63865 6.81656 6.91628 7.22137 7.28469 7.44432 7.57278 7.80265 7.88192 8.21526 8.24402 8.39790 8.73671 9.01344 10.01238 10.33984 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.009565 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.573809 B = 2926.608778 C = 4548.750888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.021 4.021 4 C -0.152 4.152 5 C -0.249 4.249 6 C 0.178 3.822 7 C 0.152 3.848 8 C -0.219 4.219 9 C 0.025 3.975 10 N -0.492 5.492 11 H 0.431 0.569 12 N -0.298 5.298 13 N -0.441 5.441 14 C 0.253 3.747 15 C -0.414 4.414 16 H 0.092 0.908 17 C 0.068 3.932 18 N -0.714 5.714 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.261 1.261 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.162 0.838 29 H 0.169 0.831 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 4.269 -0.056 4.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.221 6.221 3 C -0.071 4.071 4 C -0.176 4.176 5 C -0.274 4.274 6 C 0.036 3.964 7 C -0.014 4.014 8 C -0.248 4.248 9 C -0.120 4.120 10 N -0.201 5.201 11 H 0.273 0.727 12 N -0.123 5.123 13 N -0.157 5.157 14 C 0.125 3.875 15 C -0.446 4.446 16 H 0.110 0.890 17 C -0.157 4.157 18 N -0.336 5.336 19 Si 0.733 3.267 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.185 1.185 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.179 0.821 29 H 0.186 0.814 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.846 4.834 -0.072 4.909 hybrid contribution -0.031 -0.258 -0.111 0.283 sum -0.877 4.576 -0.183 4.663 Atomic orbital electron populations 1.22772 0.81648 1.01913 1.00030 1.85946 1.18373 1.27804 1.89943 1.20390 0.93714 0.83232 1.09743 1.20891 0.97885 0.92494 1.06298 1.21027 0.94016 0.96504 1.15874 1.18520 0.88717 0.89684 0.99525 1.20630 0.92473 0.90965 0.97304 1.21825 0.96451 0.95238 1.11320 1.22437 0.91043 0.93836 1.04646 1.46234 1.03926 1.08473 1.61484 0.72668 1.77479 1.11145 0.97243 1.26449 1.68746 1.34821 0.95051 1.17072 1.18076 0.84955 0.91795 0.92678 1.19495 0.90984 0.93049 1.41083 0.89037 1.26040 0.98552 0.97227 0.93908 1.70133 1.10225 1.24601 1.28660 0.86293 0.79069 0.82228 0.79130 1.19567 1.20215 1.18483 0.94115 0.94102 0.89837 0.87638 0.87785 0.82055 0.81402 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.83 101.05 0.99 1.54 16 2 O -0.31 -7.03 9.62 -18.32 -0.18 -7.21 16 3 C -0.02 -0.54 6.74 -38.06 -0.26 -0.79 16 4 C -0.15 -3.51 9.11 -39.22 -0.36 -3.87 16 5 C -0.25 -6.00 9.72 -38.86 -0.38 -6.38 16 6 C 0.18 4.59 6.76 -82.91 -0.56 4.02 16 7 C 0.15 3.49 7.01 -82.79 -0.58 2.91 16 8 C -0.22 -4.49 10.52 -39.70 -0.42 -4.91 16 9 C 0.03 0.39 11.97 -17.26 -0.21 0.19 16 10 N -0.49 -7.73 7.35 30.42 0.22 -7.51 16 11 H 0.43 4.82 8.96 -182.62 -1.64 3.19 16 12 N -0.30 -6.16 12.33 33.42 0.41 -5.75 16 13 N -0.44 -12.17 7.58 -7.56 -0.06 -12.23 16 14 C 0.25 7.02 6.56 -84.86 -0.56 6.46 16 15 C -0.41 -11.18 8.93 -37.87 -0.34 -11.52 16 16 H 0.09 2.40 7.33 -52.49 -0.38 2.01 16 17 C 0.07 1.71 5.49 -17.33 -0.10 1.61 16 18 N -0.71 -18.40 11.48 55.55 0.64 -17.76 16 19 Si 0.91 18.62 29.56 -169.99 -5.03 13.59 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 24 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.11 2.09 6.43 -52.49 -0.34 1.75 16 27 H 0.10 2.34 7.83 -52.49 -0.41 1.93 16 28 H 0.16 3.50 8.06 -52.49 -0.42 3.07 16 29 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.27 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 270.36 15.07 4.07 4.07 Total: -1.00 -31.50 270.36 -6.64 -38.13 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -3.97 Total: 5.39 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.75 Total: -10.73 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 1.22 Total: -43.25 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.18 Total: -7.21 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.50 -6.64 -38.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245314582.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.889 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds