Wall clock time and date at job start Sun Mar 29 2020 23:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35541 * 116.99650 * 2 1 4 4 C 1.39120 * 120.48625 * 359.97438 * 3 2 1 5 5 C 1.38318 * 118.63938 * 179.97438 * 4 3 2 6 6 C 1.40093 * 119.57042 * 359.97438 * 5 4 3 7 7 C 1.48253 * 119.51420 * 179.97438 * 6 5 4 8 8 C 1.40922 * 126.04626 * 179.97438 * 7 6 5 9 9 C 1.35039 * 107.85458 * 179.73276 * 8 7 6 10 10 N 1.35082 * 108.00115 * 0.02562 * 9 8 7 11 11 H 0.96998 * 125.92820 * 179.97438 * 10 9 8 12 12 N 1.31710 * 126.05210 * 359.68983 * 7 6 5 13 13 N 1.32172 * 120.96429 * 0.25807 * 6 5 4 14 14 C 1.33600 * 121.45862 * 359.47703 * 13 6 5 15 15 C 1.40989 * 119.83633 * 180.26676 * 14 13 6 16 16 H 1.07990 * 120.00305 * 173.90683 * 15 14 13 17 17 C 1.40021 * 119.99524 * 353.91335 * 15 14 13 18 18 N 1.30773 * 120.00434 * 6.33578 * 17 15 14 19 19 Si 1.86803 * 119.99618 * 186.33343 * 17 15 14 20 20 H 1.48510 * 109.47045 * 94.98674 * 19 17 15 21 21 H 1.48501 * 109.47206 * 214.98267 * 19 17 15 22 22 H 1.48498 * 109.47159 * 334.98735 * 19 17 15 23 23 H 1.09001 * 109.47137 * 300.00636 * 1 2 3 24 24 H 1.09006 * 109.46509 * 60.00485 * 1 2 3 25 25 H 1.08990 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.68129 * 359.95664 * 4 3 2 27 27 H 1.07997 * 120.21136 * 180.02562 * 5 4 3 28 28 H 1.07998 * 126.07040 * 359.71979 * 8 7 6 29 29 H 1.07994 * 126.00245 * 180.02562 * 9 8 7 30 30 H 0.97002 * 120.00317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2965 2.3808 -0.0005 5 6 1.9638 3.5924 0.0000 6 6 3.3646 3.6102 0.0017 7 6 4.0785 4.9095 0.0017 8 6 5.4764 5.0876 0.0037 9 6 5.7247 6.4149 -0.0030 10 7 4.5387 7.0614 -0.0085 11 1 4.4149 8.0235 -0.0136 12 7 3.5185 6.1016 -0.0055 13 7 4.0589 2.4855 -0.0024 14 6 3.4556 1.2936 0.0021 15 6 4.2299 0.1154 0.0032 16 1 3.7497 -0.8464 0.1062 17 6 5.6218 0.1924 -0.1290 18 7 6.2152 1.3577 -0.1290 19 14 6.6309 -1.3697 -0.3055 20 1 6.8645 -1.6480 -1.7455 21 1 7.9352 -1.1968 0.3831 22 1 5.8954 -2.5059 0.3053 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 0.2170 2.3462 -0.0017 27 1 1.4084 4.5186 0.0000 28 1 6.2175 4.3020 0.0098 29 1 6.7002 6.8782 -0.0038 30 1 7.1794 1.4110 -0.2210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245314582.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:33 Heat of formation + Delta-G solvation = 52.606033 kcal Electronic energy + Delta-G solvation = -16954.316270 eV Core-core repulsion = 14136.970043 eV Total energy + Delta-G solvation = -2817.346227 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.86291 -40.59343 -38.38301 -35.56240 -33.08897 -32.30348 -30.85814 -30.58621 -28.08705 -27.39804 -24.11643 -23.44954 -21.87951 -20.78024 -19.22296 -18.96603 -18.38270 -17.29546 -16.59072 -16.33477 -15.95401 -15.49796 -14.77196 -14.66900 -14.28099 -14.19680 -13.97877 -13.87959 -12.98938 -12.87925 -12.83645 -12.44774 -12.08355 -12.06057 -11.65809 -11.59510 -11.26284 -10.46781 -10.02400 -9.64086 -9.59703 -8.79963 -8.26426 -6.33320 0.37696 0.99151 1.26885 1.45779 1.54864 1.59882 2.10325 2.13372 2.29623 2.83339 2.95887 3.65886 3.90765 4.09269 4.30474 4.36458 4.49655 4.56135 4.61319 4.75230 4.80411 4.98110 5.09131 5.21318 5.34427 5.54747 5.63762 5.78089 6.05414 6.31436 6.40312 6.61187 6.81317 6.85354 7.14008 8.09681 8.50689 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.009565 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.573809 B = 2926.608778 C = 4548.750888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.330 6.330 3 C -0.035 4.035 4 C -0.148 4.148 5 C -0.254 4.254 6 C 0.154 3.846 7 C 0.116 3.884 8 C -0.263 4.263 9 C 0.072 3.928 10 N -0.465 5.465 11 H 0.455 0.545 12 N -0.317 5.317 13 N -0.466 5.466 14 C 0.215 3.785 15 C -0.448 4.448 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.744 5.744 19 Si 0.986 3.014 20 H -0.265 1.265 21 H -0.265 1.265 22 H -0.259 1.259 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.116 0.884 26 H 0.141 0.859 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.228 0.772 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 5.252 -0.158 5.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.243 6.243 3 C -0.084 4.084 4 C -0.172 4.172 5 C -0.279 4.279 6 C 0.012 3.988 7 C -0.047 4.047 8 C -0.292 4.292 9 C -0.075 4.075 10 N -0.177 5.177 11 H 0.302 0.698 12 N -0.144 5.144 13 N -0.182 5.182 14 C 0.086 3.914 15 C -0.480 4.480 16 H 0.105 0.895 17 C -0.198 4.198 18 N -0.366 5.366 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.189 1.189 22 H -0.183 1.183 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.135 0.865 26 H 0.159 0.841 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.245 0.755 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.618 5.855 -0.171 5.890 hybrid contribution -0.204 -0.397 -0.072 0.452 sum -0.822 5.458 -0.243 5.525 Atomic orbital electron populations 1.23149 0.78444 1.04554 1.01035 1.85891 1.21671 1.26884 1.89868 1.20409 0.93451 0.84666 1.09867 1.21220 0.99559 0.91495 1.04968 1.21290 0.93866 0.97442 1.15326 1.19068 0.89857 0.90570 0.99294 1.20549 0.93677 0.90741 0.99740 1.21788 0.95179 0.97231 1.15031 1.23060 0.92759 0.91908 0.99756 1.46255 1.03244 1.09246 1.58917 0.69800 1.77358 1.12808 0.97136 1.27121 1.68715 1.35859 0.95591 1.18036 1.18567 0.86775 0.92371 0.93640 1.19716 0.92361 0.92841 1.43120 0.89470 1.26907 0.98997 1.00783 0.93091 1.70217 1.10951 1.26668 1.28766 0.85147 0.77437 0.77613 0.79198 1.19035 1.18899 1.18279 0.92984 0.92982 0.86548 0.84149 0.86430 0.84275 0.75547 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.83 113.37 1.11 1.85 16 2 O -0.33 -15.19 9.62 -88.45 -0.85 -16.04 16 3 C -0.03 -1.78 6.74 23.26 0.16 -1.63 16 4 C -0.15 -6.90 9.11 22.50 0.21 -6.70 16 5 C -0.25 -12.45 9.72 22.74 0.22 -12.23 16 6 C 0.15 8.23 6.76 42.21 0.29 8.51 16 7 C 0.12 5.46 7.01 42.48 0.30 5.76 16 8 C -0.26 -10.80 10.52 22.19 0.23 -10.57 16 9 C 0.07 2.03 11.97 83.46 1.00 3.02 16 10 N -0.46 -13.20 7.35 -57.68 -0.42 -13.62 16 11 H 0.45 8.31 8.96 -213.34 -1.91 6.40 16 12 N -0.32 -12.83 12.33 -48.19 -0.59 -13.43 16 13 N -0.47 -26.99 7.58 -177.84 -1.35 -28.34 16 14 C 0.21 12.47 6.56 40.32 0.26 12.73 16 15 C -0.45 -25.30 8.93 23.38 0.21 -25.09 16 16 H 0.09 4.78 7.33 -2.92 -0.02 4.76 16 17 C 0.02 1.26 5.49 85.28 0.47 1.73 16 18 N -0.74 -39.78 11.48 21.84 0.25 -39.53 16 19 Si 0.99 38.92 29.56 68.60 2.03 40.95 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 24 H 0.05 1.53 7.69 -2.38 -0.02 1.52 16 25 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 26 H 0.14 5.34 6.43 -2.91 -0.02 5.32 16 27 H 0.12 5.30 7.83 -2.91 -0.02 5.27 16 28 H 0.14 6.29 8.06 -2.91 -0.02 6.27 16 29 H 0.23 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.28 13.39 8.30 -92.71 -0.77 12.62 16 Total: -1.00 -73.15 270.36 2.79 -70.36 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.73 Total: 22.25 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 4.45 Total: -22.60 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -2.11 Total: -94.92 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.85 Total: -16.04 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -73.15 2.79 -70.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245314582.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.971 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds