Wall clock time and date at job start Sun Mar 29 2020 23:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39294 * 119.12916 * 2 1 4 4 C 1.36605 * 119.94761 * 180.02562 * 3 2 1 5 5 C 1.40730 * 118.15780 * 359.97438 * 4 3 2 6 6 C 1.40471 * 121.34994 * 180.02562 * 5 4 3 7 7 C 1.36084 * 119.64409 * 179.97438 * 6 5 4 8 8 C 1.39596 * 120.84017 * 359.79207 * 7 6 5 9 9 F 1.35103 * 119.49526 * 180.23655 * 8 7 6 10 10 C 1.36302 * 121.00882 * 0.44880 * 8 7 6 11 11 C 1.50697 * 120.12896 * 179.80949 * 10 8 7 12 12 C 1.50700 * 109.47266 * 269.72260 * 11 10 8 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 C 1.40518 * 119.73684 * 359.53605 * 10 8 7 21 21 N 1.31109 * 119.12907 * 179.97438 * 2 1 3 22 22 H 1.08993 * 109.46816 * 90.00865 * 1 2 3 23 23 H 1.09006 * 109.46984 * 210.00521 * 1 2 3 24 24 H 1.09001 * 109.46956 * 330.00278 * 1 2 3 25 25 H 1.08001 * 120.02797 * 359.97438 * 3 2 1 26 26 H 1.07999 * 120.92177 * 180.02562 * 4 3 2 27 27 H 1.07999 * 120.17581 * 359.97438 * 6 5 4 28 28 H 1.07999 * 119.57616 * 180.02562 * 7 6 5 29 29 H 1.09004 * 109.47205 * 149.72353 * 11 10 8 30 30 H 1.08997 * 109.47395 * 29.72845 * 11 10 8 31 31 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2168 0.0000 4 6 3.5510 1.2363 -0.0005 5 6 4.2328 0.0051 -0.0005 6 6 5.6363 -0.0530 -0.0005 7 6 6.2598 -1.2626 0.0001 8 6 5.5224 -2.4479 0.0050 9 9 6.1694 -3.6339 0.0102 10 6 4.1595 -2.4270 0.0002 11 6 3.3832 -3.7186 0.0013 12 6 3.1234 -4.1498 -1.4192 13 1 3.4847 -3.5489 -2.2406 14 6 2.4244 -5.3115 -1.6701 15 7 1.9891 -6.0461 -0.6698 16 14 2.1030 -5.8464 -3.4308 17 1 3.2175 -6.7099 -3.8970 18 1 0.8287 -6.6063 -3.4925 19 1 2.0073 -4.6479 -4.3025 20 6 3.4813 -1.1963 0.0000 21 7 2.1453 -1.1453 0.0005 22 1 -0.3633 -0.0002 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6314 2.1440 -0.0004 26 1 4.0927 2.1706 -0.0001 27 1 6.2173 0.8573 -0.0009 28 1 7.3389 -1.3061 0.0005 29 1 2.4335 -3.5713 0.5157 30 1 3.9590 -4.4882 0.5151 31 1 1.4970 -6.8632 -0.8464 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056297.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:14 Heat of formation + Delta-G solvation = -3.512128 kcal Electronic energy + Delta-G solvation = -16995.941309 eV Core-core repulsion = 14156.241654 eV Total energy + Delta-G solvation = -2839.699654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.12882 -40.43229 -36.79473 -34.06643 -32.48168 -31.53192 -30.37043 -27.62975 -26.80019 -23.40420 -23.17497 -22.26952 -20.31411 -18.10412 -16.60407 -16.53452 -16.25948 -15.17667 -14.89053 -14.52799 -14.36430 -14.12642 -13.71982 -13.15027 -12.64842 -12.60503 -12.42648 -12.14252 -11.97155 -11.59780 -11.28525 -10.98140 -10.77148 -10.61636 -10.41577 -10.10275 -9.72292 -9.28486 -8.85858 -8.31924 -8.18823 -7.51500 -5.94373 -3.96235 0.78262 1.11666 2.38233 3.18676 3.36055 3.41285 3.45999 4.41351 4.49940 4.56642 4.76693 4.87753 5.05100 5.12446 5.22132 5.41113 5.44459 5.56763 5.71015 5.82018 5.84702 6.12080 6.16569 6.28930 6.37005 6.46834 6.55594 6.69259 6.96716 7.32833 7.63085 7.80922 7.99493 8.37730 8.46748 9.04542 9.64507 11.16049 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.009191 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.383344 B = 3045.694995 C = 4106.227109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.176 4.176 4 C -0.063 4.063 5 C -0.117 4.117 6 C -0.104 4.104 7 C -0.134 4.134 8 C 0.086 3.914 9 F -0.132 7.132 10 C -0.042 4.042 11 C 0.056 3.944 12 C -0.497 4.497 13 H 0.051 0.949 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.154 3.846 21 N -0.435 5.435 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 15.132 2.267 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.011 4.011 3 C -0.196 4.196 4 C -0.089 4.089 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.153 4.153 8 C 0.065 3.935 9 F -0.111 7.111 10 C -0.043 4.043 11 C 0.019 3.981 12 C -0.536 4.536 13 H 0.070 0.930 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.032 3.968 21 N -0.143 5.143 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.226 14.053 2.309 14.414 hybrid contribution 0.488 0.284 -1.050 1.193 sum 2.714 14.337 1.259 14.646 Atomic orbital electron populations 1.20731 0.89026 1.03236 1.03102 1.21519 0.97201 0.88158 0.94237 1.21641 0.94996 0.99005 1.03946 1.21296 0.94372 0.96806 0.96420 1.18869 0.94754 0.94164 1.04127 1.20547 0.92521 0.97308 1.01888 1.20856 1.00396 0.91517 1.02537 1.17137 0.89966 0.80954 1.05447 1.91488 1.81137 1.44579 1.93849 1.20483 0.92154 0.97610 0.94098 1.18256 0.95351 0.86050 0.98434 1.20847 1.35014 1.06975 0.90744 0.93038 1.24928 0.95694 0.96392 0.97073 1.69957 1.37932 1.14865 1.30470 0.86550 0.77624 0.78630 0.84968 1.20648 1.21123 1.19972 1.18447 0.89165 0.91491 0.97737 1.67990 1.08293 1.27807 1.10229 0.90417 0.90122 0.91120 0.85144 0.84892 0.85179 0.85088 0.93313 0.95008 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.14 36.01 0.37 -0.99 16 2 C 0.14 2.38 6.78 -82.51 -0.56 1.82 16 3 C -0.18 -2.37 9.64 -39.78 -0.38 -2.75 16 4 C -0.06 -0.86 9.89 -39.23 -0.39 -1.24 16 5 C -0.12 -2.00 5.74 -106.79 -0.61 -2.61 16 6 C -0.10 -1.53 9.77 -39.51 -0.39 -1.92 16 7 C -0.13 -2.19 9.93 -39.85 -0.40 -2.59 16 8 C 0.09 1.80 7.18 -39.77 -0.29 1.52 16 9 F -0.13 -2.93 16.36 2.25 0.04 -2.89 16 10 C -0.04 -0.98 5.08 -104.46 -0.53 -1.51 16 11 C 0.06 1.54 4.69 -29.04 -0.14 1.41 16 12 C -0.50 -14.73 9.09 -34.44 -0.31 -15.05 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 16 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.15 3.28 6.58 -84.87 -0.56 2.72 16 21 N -0.44 -9.33 9.31 -7.23 -0.07 -9.40 16 22 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 25 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 26 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.05 1.43 7.56 -51.93 -0.39 1.04 16 30 H 0.03 0.93 7.58 -51.93 -0.39 0.53 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 277.58 15.07 4.18 4.18 Total: -1.00 -33.33 277.58 -7.70 -41.03 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -3.28 Total: -4.27 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -4.28 Total: -19.51 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.67 Total: -36.04 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.33 -7.70 -41.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056297.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.517 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds