Wall clock time and date at job start Sun Mar 29 2020 22:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00333 * 2 1 4 4 H 1.48497 * 109.46907 * 270.00086 * 3 2 1 5 5 H 1.48500 * 109.46841 * 29.99894 * 3 2 1 6 6 H 1.48495 * 109.47085 * 150.00139 * 3 2 1 7 7 C 1.37879 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99746 * 359.97438 * 7 2 1 10 10 C 1.53515 * 114.17112 * 179.97438 * 9 7 2 11 11 N 1.47478 * 87.93409 * 139.66818 * 10 9 7 12 12 C 1.46890 * 111.00365 * 221.29878 * 11 10 9 13 13 H 1.08995 * 109.53990 * 52.47858 * 12 11 10 14 14 C 1.54022 * 109.75064 * 172.87158 * 12 11 10 15 15 C 1.55049 * 106.69766 * 166.91783 * 14 12 11 16 16 S 1.83280 * 102.56909 * 317.61070 * 15 14 12 17 17 O 1.42099 * 109.35097 * 269.81732 * 16 15 14 18 18 O 1.42103 * 109.35620 * 136.61403 * 16 15 14 19 19 C 1.54167 * 109.64604 * 292.11407 * 12 11 10 20 20 C 1.47482 * 87.83521 * 332.99332 * 11 10 9 21 21 H 0.97011 * 119.99642 * 0.02562 * 1 2 3 22 22 H 1.09001 * 113.26070 * 47.05127 * 9 7 2 23 23 H 1.09010 * 113.47213 * 24.90704 * 10 9 7 24 24 H 1.08996 * 113.53220 * 254.44986 * 10 9 7 25 25 H 1.09000 * 109.95358 * 47.62241 * 14 12 11 26 26 H 1.09006 * 110.02518 * 286.25190 * 14 12 11 27 27 H 1.08995 * 110.78985 * 199.33753 * 15 14 12 28 28 H 1.09003 * 110.95211 * 75.95861 * 15 14 12 29 29 H 1.09008 * 110.31817 * 93.33571 * 19 12 11 30 30 H 1.08997 * 110.32118 * 331.24763 * 19 12 11 31 31 H 1.09006 * 113.47494 * 141.77696 * 20 11 10 32 32 H 1.09001 * 113.47086 * 272.23544 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.1494 -3.7439 0.0016 11 7 1.2081 -4.3579 0.9564 12 6 1.9272 -5.0853 2.0107 13 1 2.6700 -4.4294 2.4645 14 6 0.9324 -5.5618 3.0857 15 6 1.6884 -6.5876 3.9689 16 16 2.6075 -7.5788 2.7311 17 8 1.8083 -8.6805 2.3227 18 8 3.9337 -7.7963 3.1927 19 6 2.6260 -6.3189 1.4051 20 6 0.8564 -2.9959 1.3996 21 1 -0.4850 0.8402 -0.0004 22 1 0.4445 -2.5312 -0.7310 23 1 3.1392 -3.5649 0.4218 24 1 2.1862 -4.2539 -0.9610 25 1 0.0734 -6.0378 2.6127 26 1 0.6048 -4.7170 3.6918 27 1 0.9874 -7.2128 4.5219 28 1 2.3755 -6.0846 4.6493 29 1 3.6519 -6.0752 1.1289 30 1 2.0754 -6.6768 0.5352 31 1 -0.2035 -2.8716 1.6216 32 1 1.5011 -2.6175 2.1929 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254327304.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:40 Heat of formation + Delta-G solvation = -60.728498 kcal Electronic energy + Delta-G solvation = -16085.214954 eV Core-core repulsion = 13366.105373 eV Total energy + Delta-G solvation = -2719.109581 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96186 -38.08844 -37.12449 -36.58820 -34.47766 -31.23417 -29.31758 -26.95689 -26.07505 -24.56928 -21.73507 -20.53704 -19.77651 -18.66652 -17.77296 -17.58693 -16.67628 -16.60589 -16.25071 -15.77777 -15.28048 -14.91104 -14.61394 -14.10229 -13.44931 -13.36832 -13.27580 -13.14830 -13.09381 -12.92281 -12.87822 -12.38134 -12.31792 -12.19231 -11.93090 -11.43506 -11.25809 -11.05257 -10.81737 -10.49081 -9.72780 -8.15337 -6.26255 -0.88598 1.43014 1.44774 1.53956 1.59429 2.42470 2.63178 2.99375 3.14522 3.26889 3.41755 3.66732 3.84213 4.03180 4.09483 4.27722 4.43804 4.58562 4.62311 4.66428 4.82492 4.86162 4.97233 4.98748 5.10612 5.27461 5.44311 5.63710 5.85985 6.29227 6.35665 6.83598 7.42683 8.94230 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.053357 B = 0.005114 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.642823 B = 5474.264567 C = 5552.968663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.016 3.984 10 C 0.009 3.991 11 N -0.470 5.470 12 C 0.046 3.954 13 H 0.073 0.927 14 C -0.114 4.114 15 C -0.558 4.558 16 S 2.410 3.590 17 O -0.974 6.974 18 O -0.976 6.976 19 C -0.581 4.581 20 C 0.016 3.984 21 H 0.262 0.738 22 H 0.030 0.970 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.163 0.837 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.054 0.946 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 -10.533 7.683 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.120 4.120 11 N -0.193 5.193 12 C -0.065 4.065 13 H 0.091 0.909 14 C -0.153 4.153 15 C -0.691 4.691 16 S 2.597 3.403 17 O -0.971 6.971 18 O -0.973 6.973 19 C -0.711 4.711 20 C -0.113 4.113 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.180 0.820 28 H 0.177 0.823 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.072 0.928 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.459 -11.882 7.501 14.472 hybrid contribution 0.494 2.303 -0.006 2.355 sum 3.953 -9.579 7.496 12.790 Atomic orbital electron populations 1.70083 1.07465 1.27559 1.50861 1.25781 0.95550 1.02549 0.94383 0.85610 0.78809 0.79317 0.78244 1.20263 1.21063 1.18948 1.21376 0.93009 0.91453 1.50994 0.92262 1.20074 0.94652 0.92091 0.93506 1.23854 0.95620 0.95491 0.97002 1.68944 1.27300 1.12924 1.10137 1.22758 0.95712 0.94915 0.93093 0.90920 1.22224 0.98374 0.99961 0.94753 1.30446 1.13688 1.11960 1.13019 1.08286 0.75020 0.77331 0.79653 1.93562 1.70981 1.50456 1.82123 1.93554 1.37598 1.85954 1.80226 1.30548 1.10270 1.12670 1.17616 1.23805 0.99669 0.87861 0.99939 0.92864 0.95223 0.91577 0.90887 0.88659 0.87990 0.81950 0.82329 0.83556 0.83777 0.92779 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.11 13.26 21.45 0.28 -51.83 16 2 C 0.02 0.90 5.46 84.66 0.46 1.36 16 3 Si 0.95 41.65 29.54 68.60 2.03 43.67 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.53 -27.59 8.82 25.60 0.23 -27.36 16 8 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.02 0.76 3.77 -11.20 -0.04 0.72 16 10 C 0.01 0.34 6.71 83.57 0.56 0.90 16 11 N -0.47 -16.19 6.10 -898.11 -5.48 -21.68 16 12 C 0.05 1.16 1.95 45.66 0.09 1.25 16 13 H 0.07 1.79 7.57 -2.39 -0.02 1.77 16 14 C -0.11 -2.29 5.79 31.64 0.18 -2.11 16 15 C -0.56 -7.93 7.31 72.68 0.53 -7.40 16 16 S 2.41 48.85 6.11 -56.49 -0.34 48.50 16 17 O -0.97 -26.64 18.15 -127.49 -2.31 -28.95 16 18 O -0.98 -25.88 18.15 -127.49 -2.31 -28.19 16 19 C -0.58 -12.46 6.31 72.38 0.46 -12.00 16 20 C 0.02 0.68 6.98 83.57 0.58 1.26 16 21 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 22 H 0.03 1.61 8.11 -2.39 -0.02 1.59 16 23 H 0.07 2.35 7.77 -2.38 -0.02 2.34 16 24 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.10 2.00 8.13 -2.38 -0.02 1.98 16 27 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.15 2.77 8.14 -2.38 -0.02 2.75 16 30 H 0.14 3.18 8.07 -2.39 -0.02 3.16 16 31 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.06 2.37 7.62 -2.39 -0.02 2.35 16 Total: -1.00 -68.70 277.95 -4.00 -72.70 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.10 Total: 9.14 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 3.05 Total: -43.37 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -5.20 Total: -73.50 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -4.63 Total: -57.14 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 48.85 SS G_CDS: -0.34 Total: 48.50 kcal Total: -68.70 -4.00 -72.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254327304.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.969 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds