Wall clock time and date at job start Sun Mar 29 2020 22:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86799 * 119.99842 * 2 1 4 4 H 1.48505 * 109.46679 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47505 * 300.00141 * 3 2 1 6 6 H 1.48499 * 109.47078 * 60.00828 * 3 2 1 7 7 C 1.40047 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.46380 * 120.00068 * 359.97438 * 7 2 1 10 10 O 1.21696 * 119.99793 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00335 * 179.97438 * 9 7 2 12 12 C 1.46492 * 120.00240 * 179.97438 * 11 9 7 13 13 H 1.09008 * 109.61490 * 34.64966 * 12 11 9 14 14 C 1.53302 * 109.62203 * 274.10437 * 12 11 9 15 15 C 1.52873 * 108.58066 * 165.82363 * 14 12 11 16 16 C 1.52713 * 110.15477 * 54.52566 * 15 14 12 17 17 H 1.09003 * 115.39000 * 127.16612 * 16 15 14 18 18 C 1.52022 * 120.50776 * 338.49555 * 16 15 14 19 19 H 1.09006 * 115.88804 * 150.04365 * 18 16 15 20 20 C 1.52076 * 120.05071 * 5.35167 * 18 16 15 21 21 C 1.52225 * 60.66261 * 255.76619 * 18 16 15 22 22 F 1.39902 * 117.55716 * 252.63460 * 21 18 16 23 23 F 1.39897 * 117.52500 * 107.38345 * 21 18 16 24 24 H 0.97001 * 119.99371 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99742 * 0.02562 * 11 9 7 26 26 H 1.08995 * 109.61866 * 285.55921 * 14 12 11 27 27 H 1.09008 * 109.61460 * 46.10041 * 14 12 11 28 28 H 1.09006 * 109.35279 * 174.73345 * 15 14 12 29 29 H 1.09000 * 109.36090 * 294.44827 * 15 14 12 30 30 H 1.09002 * 109.26697 * 217.99723 * 20 18 16 31 31 H 1.08996 * 109.27059 * 98.49459 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8821 2.3963 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 -0.0010 13 1 0.3012 -4.8108 -0.5837 14 6 0.8712 -5.3109 1.4396 15 6 -0.1781 -6.4220 1.4022 16 6 0.3155 -7.5831 0.5418 17 1 0.2878 -8.5629 1.0186 18 6 1.4005 -7.3646 -0.5004 19 1 2.0439 -8.2206 -0.7043 20 6 2.0893 -6.0133 -0.6108 21 6 -0.0457 -7.5178 -0.9502 22 9 -0.4038 -8.7136 -1.5819 23 9 -0.7057 -6.3718 -1.4064 24 1 -0.4849 0.8401 0.0004 25 1 2.9189 -3.6478 -0.0020 26 1 1.7673 -5.6704 1.9453 27 1 0.4704 -4.4467 1.9696 28 1 -0.3644 -6.7771 2.4158 29 1 -1.1040 -6.0307 0.9807 30 1 2.2702 -5.7866 -1.6615 31 1 3.0416 -6.0507 -0.0819 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261750402.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:13 Heat of formation + Delta-G solvation = -143.376371 kcal Electronic energy + Delta-G solvation = -18138.358884 eV Core-core repulsion = 14861.825037 eV Total energy + Delta-G solvation = -3276.533848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.68711 -48.37025 -40.47481 -38.76449 -35.37640 -34.44779 -32.59156 -31.13366 -28.22951 -25.28001 -23.81137 -22.45842 -21.53180 -20.31822 -19.05555 -18.74742 -17.49429 -17.43522 -16.91059 -16.60894 -15.94461 -15.42608 -15.19052 -14.93562 -14.66526 -14.52257 -14.28121 -14.14271 -13.96111 -13.49251 -13.27064 -12.91012 -12.81070 -12.60617 -12.18464 -12.09152 -11.97471 -11.54002 -11.16428 -10.93685 -10.55535 -9.80502 -9.39159 -8.27317 -6.83744 1.40253 1.40637 1.58497 2.05346 2.13066 2.25332 2.49831 3.04022 3.25813 3.38654 3.62208 3.65182 3.95546 3.97786 4.21976 4.36592 4.42445 4.50572 4.61960 4.80675 4.85892 4.94570 5.07665 5.10069 5.33205 5.36481 5.40628 5.91732 6.28966 6.35237 6.88658 7.61784 8.53839 8.71090 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.048380 B = 0.005564 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.611834 B = 5031.214232 C = 5105.624422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.245 1.245 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.538 3.462 10 O -0.631 6.631 11 N -0.749 5.749 12 C 0.132 3.868 13 H 0.048 0.952 14 C -0.120 4.120 15 C -0.092 4.092 16 C -0.115 4.115 17 H 0.168 0.832 18 C -0.110 4.110 19 H 0.168 0.832 20 C -0.092 4.092 21 C 0.144 3.856 22 F -0.169 7.169 23 F -0.179 7.179 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.944 -14.929 2.006 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.168 1.168 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.342 3.658 10 O -0.518 6.518 11 N -0.402 5.402 12 C 0.026 3.974 13 H 0.067 0.933 14 C -0.159 4.159 15 C -0.130 4.130 16 C -0.134 4.134 17 H 0.186 0.814 18 C -0.129 4.129 19 H 0.186 0.814 20 C -0.130 4.130 21 C 0.107 3.893 22 F -0.150 7.150 23 F -0.160 7.160 24 H 0.083 0.917 25 H 0.229 0.771 26 H 0.110 0.890 27 H 0.049 0.951 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.866 -14.863 1.951 16.097 hybrid contribution -0.149 0.973 -0.460 1.087 sum 5.717 -13.889 1.491 15.094 Atomic orbital electron populations 1.70220 1.09615 1.28736 1.36912 1.26999 0.95492 1.05060 0.91246 0.84964 0.79427 0.75407 0.78414 1.16781 1.19577 1.19392 1.21489 0.94752 0.90153 1.54662 0.89350 1.18604 0.86852 0.84452 0.75884 1.90563 1.16332 1.87951 1.56967 1.45804 1.09104 1.04472 1.80862 1.20968 0.95856 0.84303 0.96278 0.93345 1.21895 0.99805 0.97195 0.96997 1.21043 0.97722 0.93263 1.00974 1.23820 0.98269 1.03533 0.87729 0.81417 1.23304 0.89658 1.01860 0.98096 0.81429 1.21123 0.99487 0.90092 1.02254 1.20807 0.98681 0.72456 0.97310 1.92978 1.93376 1.44203 1.84410 1.92969 1.83262 1.49178 1.90583 0.91732 0.77142 0.89043 0.95150 0.87524 0.93572 0.90797 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.67 11.83 21.84 0.26 -51.41 16 2 C 0.03 1.50 5.50 85.30 0.47 1.97 16 3 Si 1.00 41.42 29.56 68.60 2.03 43.44 16 4 H -0.24 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.57 -32.81 9.54 24.83 0.24 -32.57 16 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.54 31.62 7.72 86.36 0.67 32.29 16 10 O -0.63 -43.32 14.68 -4.34 -0.06 -43.38 16 11 N -0.75 -33.32 5.08 -446.54 -2.27 -35.59 16 12 C 0.13 5.00 2.17 45.05 0.10 5.10 16 13 H 0.05 2.31 5.16 -2.38 -0.01 2.30 16 14 C -0.12 -4.01 5.52 30.65 0.17 -3.84 16 15 C -0.09 -2.50 5.66 30.46 0.17 -2.32 16 16 C -0.11 -2.41 6.18 -10.99 -0.07 -2.48 16 17 H 0.17 2.17 8.14 -2.39 -0.02 2.15 16 18 C -0.11 -2.28 5.98 -11.68 -0.07 -2.35 16 19 H 0.17 2.11 8.14 -2.38 -0.02 2.09 16 20 C -0.09 -2.35 5.31 30.25 0.16 -2.19 16 21 C 0.14 3.97 5.10 30.56 0.16 4.13 16 22 F -0.17 -4.55 17.60 44.97 0.79 -3.76 16 23 F -0.18 -6.82 14.04 44.97 0.63 -6.19 16 24 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 25 H 0.39 14.68 8.59 -92.71 -0.80 13.89 16 26 H 0.09 2.42 8.04 -2.39 -0.02 2.40 16 27 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.05 1.56 7.54 -2.39 -0.02 1.54 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -80.54 267.11 3.73 -76.80 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.37 Total: 22.34 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 1.99 Total: -2.27 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.01 Total: -87.00 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.06 Total: -43.38 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 1.42 Total: -9.94 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -80.54 3.73 -76.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261750402.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.572 kcal (2) G-P(sol) polarization free energy of solvation -80.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds