Wall clock time and date at job start Sun Mar 29 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48495 * 109.47128 * 270.00283 * 3 2 1 5 5 H 1.48501 * 109.47115 * 30.00796 * 3 2 1 6 6 H 1.48506 * 109.46626 * 150.00306 * 3 2 1 7 7 C 1.38811 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00357 * 163.35928 * 7 2 1 9 9 N 1.36935 * 120.00217 * 343.36209 * 7 2 1 10 10 C 1.46719 * 120.10639 * 331.57879 * 9 7 2 11 11 C 1.53591 * 109.90753 * 230.67511 * 10 9 7 12 12 C 1.52462 * 108.13887 * 307.06062 * 11 10 9 13 13 H 1.09007 * 109.86803 * 303.03851 * 12 11 10 14 14 C 1.54251 * 112.18028 * 180.51809 * 12 11 10 15 15 S 1.84732 * 101.51467 * 197.62352 * 14 12 11 16 16 O 1.42105 * 109.27550 * 269.87514 * 15 14 12 17 17 O 1.42091 * 109.49528 * 136.74268 * 15 14 12 18 18 C 1.83333 * 97.05117 * 23.27727 * 15 14 12 19 19 C 1.53283 * 104.47639 * 3.45096 * 18 15 14 20 20 H 1.09005 * 108.80511 * 88.48305 * 19 18 15 21 21 C 1.47417 * 120.10981 * 151.55516 * 9 7 2 22 22 H 0.96997 * 119.99975 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.40159 * 110.53691 * 10 9 7 24 24 H 1.09003 * 109.39676 * 350.80594 * 10 9 7 25 25 H 1.09007 * 109.73036 * 187.39994 * 11 10 9 26 26 H 1.08998 * 109.72852 * 66.72173 * 11 10 9 27 27 H 1.08995 * 110.92886 * 315.53183 * 14 12 11 28 28 H 1.08998 * 110.93196 * 79.20238 * 14 12 11 29 29 H 1.09003 * 110.43337 * 244.70747 * 18 15 14 30 30 H 1.08998 * 110.54378 * 122.25358 * 18 15 14 31 31 H 1.09000 * 109.88096 * 246.99706 * 21 9 7 32 32 H 1.08996 * 109.88014 * 8.00300 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0563 -1.2217 -0.2684 9 7 1.3686 -2.3634 0.3385 10 6 0.2271 -2.3315 1.2596 11 6 0.4318 -3.3600 2.3819 12 6 0.7233 -4.7116 1.7397 13 1 -0.0901 -4.9857 1.0678 14 6 0.9329 -5.8221 2.7896 15 16 1.7803 -7.1220 1.7872 16 8 0.8052 -7.9822 1.2139 17 8 2.8565 -7.6710 2.5352 18 6 2.4461 -6.0088 0.4916 19 6 2.0414 -4.6030 0.9493 20 1 2.8202 -4.2082 1.6019 21 6 1.8222 -3.6495 -0.2212 22 1 -0.4850 0.8400 0.0004 23 1 -0.6858 -2.5688 0.7133 24 1 0.1394 -1.3353 1.6931 25 1 -0.4716 -3.4278 2.9881 26 1 1.2732 -3.0602 3.0066 27 1 1.5743 -5.4757 3.5999 28 1 -0.0222 -6.1782 3.1757 29 1 1.9970 -6.2383 -0.4748 30 1 3.5313 -6.0931 0.4356 31 1 1.0611 -4.0519 -0.8896 32 1 2.7560 -3.5081 -0.7655 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262020923.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:33 Heat of formation + Delta-G solvation = -53.366668 kcal Electronic energy + Delta-G solvation = -16568.335628 eV Core-core repulsion = 13849.545280 eV Total energy + Delta-G solvation = -2718.790348 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.65387 -36.92785 -35.92456 -34.41905 -31.79903 -31.19753 -28.30293 -26.44855 -24.20388 -21.71254 -21.29463 -19.54903 -18.75490 -16.93528 -16.25853 -16.08602 -15.59807 -14.90602 -14.47574 -13.96951 -13.90343 -13.42844 -12.96103 -12.92012 -12.31994 -12.08321 -11.99913 -11.92436 -11.73129 -11.14065 -10.93438 -10.85476 -10.73622 -10.54841 -10.35724 -10.28031 -9.96545 -9.71265 -9.50641 -8.55483 -6.80450 -5.89453 -3.33410 0.14355 2.60567 3.31300 3.38937 3.40715 3.68786 4.08604 4.38585 4.61799 4.76996 4.80745 4.96078 5.18140 5.30088 5.47304 5.49180 5.67622 5.74314 5.95477 6.00349 6.09003 6.40260 6.47858 6.51967 6.59811 6.75120 7.23485 7.54033 7.70747 8.33843 9.10754 9.72472 10.26767 11.19054 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.053117 B = 0.006188 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.012581 B = 4524.112088 C = 4688.956284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.126 4.126 12 C -0.083 4.083 13 H 0.088 0.912 14 C -0.566 4.566 15 S 2.363 3.637 16 O -0.946 6.946 17 O -0.950 6.950 18 C -0.573 4.573 19 C -0.099 4.099 20 H 0.089 0.911 21 C 0.159 3.841 22 H 0.255 0.745 23 H 0.022 0.978 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.026 0.974 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 -9.355 4.005 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.166 4.166 12 C -0.103 4.103 13 H 0.106 0.894 14 C -0.696 4.696 15 S 2.550 3.450 16 O -0.943 6.943 17 O -0.947 6.947 18 C -0.704 4.704 19 C -0.121 4.121 20 H 0.107 0.893 21 C 0.032 3.968 22 H 0.065 0.935 23 H 0.041 0.959 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.044 0.956 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.908 -10.234 4.120 11.196 hybrid contribution 0.328 1.661 -0.125 1.698 sum 2.235 -8.572 3.995 9.718 Atomic orbital electron populations 1.70034 1.05310 1.25726 1.53444 1.25074 0.95296 0.98530 1.00466 0.86299 0.79183 0.83487 0.77800 1.21297 1.21488 1.20419 1.19187 0.92559 0.84685 1.42552 0.91579 1.44141 1.35999 1.01567 1.49745 1.20831 0.88909 0.97657 0.88247 1.22134 1.00891 0.93801 0.99800 1.21726 0.98384 0.95689 0.94497 0.89357 1.30553 1.13297 1.15171 1.10624 1.09821 0.76905 0.78689 0.79548 1.93589 1.60438 1.62915 1.77347 1.93573 1.54071 1.76882 1.70194 1.30308 1.12058 1.11478 1.16597 1.22042 0.97057 0.92151 1.00822 0.89295 1.20836 0.98358 0.86298 0.91345 0.93490 0.95949 0.89457 0.92207 0.91985 0.84925 0.85001 0.84668 0.84743 0.95586 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 11.22 55.49 0.62 -24.48 16 2 C 0.01 0.14 4.89 -17.43 -0.09 0.06 16 3 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.26 -6.77 9.55 -15.06 -0.14 -6.92 16 8 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -13.76 3.01 -172.23 -0.52 -14.28 16 10 C 0.17 3.72 5.15 -3.62 -0.02 3.70 16 11 C -0.13 -2.10 5.58 -26.70 -0.15 -2.25 16 12 C -0.08 -1.19 2.16 -89.68 -0.19 -1.39 16 13 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 14 C -0.57 -6.39 6.85 37.81 0.26 -6.13 16 15 S 2.36 29.19 6.13 -107.50 -0.66 28.53 16 16 O -0.95 -14.63 18.15 -57.73 -1.05 -15.68 16 17 O -0.95 -14.50 18.15 -57.73 -1.05 -15.55 16 18 C -0.57 -6.66 6.82 37.30 0.25 -6.40 16 19 C -0.10 -1.47 2.29 -90.14 -0.21 -1.67 16 20 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 21 C 0.16 2.98 5.93 -3.77 -0.02 2.96 16 22 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.09 2.17 6.15 -51.93 -0.32 1.85 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.14 1.44 8.00 -51.93 -0.42 1.02 16 30 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 LS Contribution 268.31 15.07 4.04 4.04 Total: -1.00 -32.60 268.31 -8.44 -41.04 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.50 Total: -1.42 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -0.31 Total: -18.04 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.10 Total: -38.76 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.10 Total: -31.23 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Atomic # 16 Polarization: 29.19 SS G_CDS: -0.66 Total: 28.53 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.60 -8.44 -41.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262020923.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.328 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds