Wall clock time and date at job start Sun Mar 29 2020 22:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48495 * 109.47128 * 270.00283 * 3 2 1 5 5 H 1.48501 * 109.47115 * 30.00796 * 3 2 1 6 6 H 1.48506 * 109.46626 * 150.00306 * 3 2 1 7 7 C 1.38811 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00357 * 163.35928 * 7 2 1 9 9 N 1.36935 * 120.00217 * 343.36209 * 7 2 1 10 10 C 1.46719 * 120.10639 * 331.57879 * 9 7 2 11 11 C 1.53591 * 109.90753 * 230.67511 * 10 9 7 12 12 C 1.52462 * 108.13887 * 307.06062 * 11 10 9 13 13 H 1.09007 * 109.86803 * 303.03851 * 12 11 10 14 14 C 1.54251 * 112.18028 * 180.51809 * 12 11 10 15 15 S 1.84732 * 101.51467 * 197.62352 * 14 12 11 16 16 O 1.42105 * 109.27550 * 269.87514 * 15 14 12 17 17 O 1.42091 * 109.49528 * 136.74268 * 15 14 12 18 18 C 1.83333 * 97.05117 * 23.27727 * 15 14 12 19 19 C 1.53283 * 104.47639 * 3.45096 * 18 15 14 20 20 H 1.09005 * 108.80511 * 88.48305 * 19 18 15 21 21 C 1.47417 * 120.10981 * 151.55516 * 9 7 2 22 22 H 0.96997 * 119.99975 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.40159 * 110.53691 * 10 9 7 24 24 H 1.09003 * 109.39676 * 350.80594 * 10 9 7 25 25 H 1.09007 * 109.73036 * 187.39994 * 11 10 9 26 26 H 1.08998 * 109.72852 * 66.72173 * 11 10 9 27 27 H 1.08995 * 110.92886 * 315.53183 * 14 12 11 28 28 H 1.08998 * 110.93196 * 79.20238 * 14 12 11 29 29 H 1.09003 * 110.43337 * 244.70747 * 18 15 14 30 30 H 1.08998 * 110.54378 * 122.25358 * 18 15 14 31 31 H 1.09000 * 109.88096 * 246.99706 * 21 9 7 32 32 H 1.08996 * 109.88014 * 8.00300 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0563 -1.2217 -0.2684 9 7 1.3686 -2.3634 0.3385 10 6 0.2271 -2.3315 1.2596 11 6 0.4318 -3.3600 2.3819 12 6 0.7233 -4.7116 1.7397 13 1 -0.0901 -4.9857 1.0678 14 6 0.9329 -5.8221 2.7896 15 16 1.7803 -7.1220 1.7872 16 8 0.8052 -7.9822 1.2139 17 8 2.8565 -7.6710 2.5352 18 6 2.4461 -6.0088 0.4916 19 6 2.0414 -4.6030 0.9493 20 1 2.8202 -4.2082 1.6019 21 6 1.8222 -3.6495 -0.2212 22 1 -0.4850 0.8400 0.0004 23 1 -0.6858 -2.5688 0.7133 24 1 0.1394 -1.3353 1.6931 25 1 -0.4716 -3.4278 2.9881 26 1 1.2732 -3.0602 3.0066 27 1 1.5743 -5.4757 3.5999 28 1 -0.0222 -6.1782 3.1757 29 1 1.9970 -6.2383 -0.4748 30 1 3.5313 -6.0931 0.4356 31 1 1.0611 -4.0519 -0.8896 32 1 2.7560 -3.5081 -0.7655 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262020923.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:32 Heat of formation + Delta-G solvation = -77.070139 kcal Electronic energy + Delta-G solvation = -16569.363487 eV Core-core repulsion = 13849.545280 eV Total energy + Delta-G solvation = -2719.818207 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00737 -38.03110 -37.03521 -36.06764 -33.08568 -33.00458 -29.64181 -27.89535 -25.85974 -23.03000 -22.82554 -20.91307 -19.77603 -18.70613 -17.35139 -17.22838 -16.76184 -16.65161 -15.79967 -15.58988 -15.05768 -14.83807 -14.50906 -14.31313 -13.62712 -13.32958 -13.16813 -13.10230 -13.00504 -12.83015 -12.63700 -12.35574 -12.20001 -11.89911 -11.82304 -11.75006 -11.60376 -11.06526 -10.89318 -10.50893 -8.68760 -7.88022 -5.33912 -0.84921 1.46946 1.49265 1.58014 1.63292 2.50814 2.69405 3.10394 3.27911 3.46104 3.65218 3.68177 3.86372 4.05924 4.11110 4.40578 4.61246 4.62738 4.68647 4.80711 4.84541 4.97795 5.06896 5.20943 5.23742 5.34607 5.52466 5.66093 5.78895 6.39133 7.16134 7.86680 8.34832 9.18058 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.053117 B = 0.006188 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.012581 B = 4524.112088 C = 4688.956284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.048 4.048 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.612 5.612 10 C 0.173 3.827 11 C -0.114 4.114 12 C -0.086 4.086 13 H 0.089 0.911 14 C -0.548 4.548 15 S 2.389 3.611 16 O -0.976 6.976 17 O -0.976 6.976 18 C -0.563 4.563 19 C -0.094 4.094 20 H 0.092 0.908 21 C 0.152 3.848 22 H 0.250 0.750 23 H -0.003 1.003 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.024 0.976 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.896 -10.504 4.873 11.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.154 4.154 12 C -0.106 4.106 13 H 0.107 0.893 14 C -0.680 4.680 15 S 2.578 3.422 16 O -0.973 6.973 17 O -0.973 6.973 18 C -0.695 4.695 19 C -0.115 4.115 20 H 0.111 0.889 21 C 0.026 3.974 22 H 0.059 0.941 23 H 0.015 0.985 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.171 0.829 28 H 0.174 0.826 29 H 0.165 0.835 30 H 0.175 0.825 31 H 0.042 0.958 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.888 -11.430 4.988 12.801 hybrid contribution 0.027 2.007 -0.442 2.055 sum 2.915 -9.423 4.545 10.860 Atomic orbital electron populations 1.70184 1.06633 1.25852 1.55351 1.25777 0.95981 1.01432 1.01176 0.85343 0.78173 0.79808 0.77502 1.21321 1.22007 1.19475 1.19537 0.92861 0.86003 1.41226 0.91414 1.44406 1.36067 1.02407 1.50623 1.20657 0.87810 0.97510 0.89309 1.21942 1.02131 0.93391 0.97977 1.21675 0.98209 0.95338 0.95400 0.89305 1.30475 1.14847 1.12643 1.09992 1.08978 0.75854 0.78350 0.79010 1.93552 1.61236 1.64524 1.78027 1.93542 1.55055 1.77886 1.70848 1.30247 1.13703 1.08670 1.16869 1.21851 0.97603 0.92899 0.99172 0.88937 1.21000 0.98057 0.85334 0.92995 0.94126 0.98482 0.93072 0.90123 0.91584 0.82941 0.82630 0.83478 0.82524 0.95776 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.63 11.22 21.65 0.24 -53.39 16 2 C -0.05 -2.59 4.89 84.86 0.41 -2.18 16 3 Si 0.96 43.43 29.59 68.60 2.03 45.46 16 4 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.27 -13.93 9.55 84.03 0.80 -13.13 16 8 H 0.07 3.44 7.88 -2.91 -0.02 3.42 16 9 N -0.61 -28.53 3.01 -698.80 -2.11 -30.63 16 10 C 0.17 7.70 5.15 86.54 0.45 8.14 16 11 C -0.11 -3.62 5.58 30.61 0.17 -3.45 16 12 C -0.09 -2.25 2.16 -10.19 -0.02 -2.27 16 13 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 14 C -0.55 -10.23 6.85 72.41 0.50 -9.73 16 15 S 2.39 51.83 6.13 -56.49 -0.35 51.48 16 16 O -0.98 -27.86 18.15 -127.47 -2.31 -30.17 16 17 O -0.98 -27.03 18.15 -127.47 -2.31 -29.34 16 18 C -0.56 -11.32 6.82 72.08 0.49 -10.83 16 19 C -0.09 -2.55 2.29 -10.48 -0.02 -2.57 16 20 H 0.09 2.48 8.12 -2.38 -0.02 2.46 16 21 C 0.15 5.57 5.93 86.06 0.51 6.08 16 22 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 23 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.05 2.63 6.15 -2.39 -0.01 2.61 16 25 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 27 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.15 2.69 8.00 -2.39 -0.02 2.67 16 30 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 2.25 7.94 -2.39 -0.02 2.23 16 Total: -1.00 -70.85 268.31 -0.42 -71.28 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.10 Total: 5.26 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 3.28 Total: -29.94 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.86 Total: -84.02 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -4.63 Total: -59.52 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 51.83 SS G_CDS: -0.35 Total: 51.48 kcal Total: -70.85 -0.42 -71.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262020923.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.793 kcal (2) G-P(sol) polarization free energy of solvation -70.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds