Wall clock time and date at job start Sun Mar 29 2020 22:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 119.99940 * 2 1 4 4 H 1.48504 * 109.47212 * 270.00340 * 3 2 1 5 5 H 1.48508 * 109.47000 * 30.00150 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00265 * 3 2 1 7 7 C 1.38794 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00408 * 359.97438 * 7 2 1 9 9 S 1.76205 * 119.99818 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99711 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46799 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00172 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99895 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00121 * 179.97438 * 13 11 10 15 15 C 1.53175 * 109.53763 * 85.44463 * 14 13 11 16 16 C 1.53092 * 109.16179 * 176.85076 * 15 14 13 17 17 O 1.42910 * 109.41107 * 302.39040 * 16 15 14 18 18 C 1.42900 * 114.09727 * 61.16189 * 17 16 15 19 19 C 1.53090 * 109.41229 * 298.83586 * 18 17 16 20 20 H 0.97001 * 120.00176 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47206 * 60.00453 * 10 9 7 22 22 H 1.08998 * 109.47342 * 299.99904 * 10 9 7 23 23 H 0.97006 * 119.99838 * 359.97438 * 13 11 10 24 24 H 1.08997 * 109.61242 * 325.22842 * 14 13 11 25 25 H 1.09006 * 109.52647 * 296.75376 * 15 14 13 26 26 H 1.08998 * 109.52537 * 56.94268 * 15 14 13 27 27 H 1.08998 * 109.48147 * 182.40843 * 16 15 14 28 28 H 1.08997 * 109.48550 * 62.37144 * 16 15 14 29 29 H 1.09003 * 109.47953 * 178.86010 * 18 17 16 30 30 H 1.08995 * 109.49265 * 58.82602 * 18 17 16 31 31 H 1.09001 * 109.52724 * 297.70937 * 19 18 17 32 32 H 1.09000 * 109.52338 * 177.51272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0458 -4.4946 -0.0011 14 6 7.4909 -4.7357 -0.0016 15 6 8.0154 -4.7071 1.4373 16 6 9.5103 -5.0375 1.4338 17 8 9.7130 -6.3145 0.8252 18 6 9.2848 -6.3865 -0.5362 19 6 7.7809 -6.1103 -0.6119 20 1 -0.4850 0.8400 0.0004 21 1 3.6434 -3.4317 -0.8907 22 1 3.6440 -3.4313 0.8893 23 1 5.4291 -5.2434 -0.0011 24 1 7.9903 -3.9639 -0.5872 25 1 7.8628 -3.7144 1.8610 26 1 7.4806 -5.4453 2.0347 27 1 9.8798 -5.0606 2.4590 28 1 10.0495 -4.2764 0.8699 29 1 9.4918 -7.3816 -0.9303 30 1 9.8210 -5.6432 -1.1260 31 1 7.2412 -6.8769 -0.0558 32 1 7.4605 -6.1212 -1.6537 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317916605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:16 Heat of formation + Delta-G solvation = -96.068867 kcal Electronic energy + Delta-G solvation = -15431.239138 eV Core-core repulsion = 12710.597084 eV Total energy + Delta-G solvation = -2720.642054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.09069 -38.66825 -35.19087 -32.45670 -31.91173 -31.38137 -29.05346 -25.65114 -24.52022 -23.85337 -20.66278 -20.45275 -17.91020 -16.90146 -16.50486 -16.25477 -15.54119 -15.22430 -14.99214 -14.78012 -14.18640 -13.94650 -13.50755 -13.28762 -12.81073 -12.67962 -12.21904 -11.71651 -11.58660 -11.28636 -11.15227 -11.02336 -10.73615 -10.55371 -10.05556 -9.85444 -9.47230 -9.04872 -8.99287 -8.52340 -6.93840 -6.30471 -4.02499 2.73229 2.92637 3.26876 3.32263 3.49026 3.58316 3.65748 4.31617 4.41212 4.58539 4.68203 4.71251 4.89168 4.95918 5.08649 5.11452 5.21031 5.36988 5.40618 5.48419 5.56871 5.71703 5.75542 5.87367 5.98638 6.03982 6.51758 6.90782 7.58018 7.92606 8.40005 8.45355 9.15682 10.78820 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.062259 B = 0.004431 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.624957 B = 6317.796948 C = 6543.354521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.520 6.520 13 N -0.732 5.732 14 C 0.145 3.855 15 C -0.168 4.168 16 C 0.064 3.936 17 O -0.384 6.384 18 C 0.065 3.935 19 C -0.164 4.164 20 H 0.271 0.729 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.400 0.600 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.145 -13.141 0.049 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.386 5.386 14 C 0.040 3.960 15 C -0.207 4.207 16 C -0.013 4.013 17 O -0.303 6.303 18 C -0.012 4.012 19 C -0.202 4.202 20 H 0.081 0.919 21 H 0.115 0.885 22 H 0.115 0.885 23 H 0.234 0.766 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.330 -11.615 0.141 20.863 hybrid contribution -1.395 -0.444 -0.161 1.472 sum 15.935 -12.058 -0.020 19.984 Atomic orbital electron populations 1.69939 1.05924 1.27788 1.48047 1.24709 0.94444 0.98959 0.93147 0.86734 0.81886 0.83277 0.79942 1.19195 1.19908 1.15944 1.22320 0.88263 0.97554 1.58835 0.89392 1.84780 1.09305 1.00032 1.97432 1.23288 0.93995 1.04414 1.05822 1.20314 0.90602 0.82346 0.74969 1.90689 1.58764 1.42198 1.47762 1.46045 1.07016 1.08083 1.77433 1.20890 0.81807 0.97067 0.96213 1.22633 0.96809 1.03583 0.97681 1.22581 0.94820 0.85153 0.98788 1.87929 1.83467 1.33053 1.25867 1.22527 0.92707 1.02440 0.83565 1.22503 0.98261 0.97042 1.02378 0.91919 0.88494 0.88453 0.76635 0.89336 0.89940 0.90818 0.88556 0.92812 0.88475 0.92823 0.90406 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.16 16 11 C 0.53 9.28 7.82 -10.98 -0.09 9.20 16 12 O -0.52 -11.00 15.52 5.56 0.09 -10.91 16 13 N -0.73 -9.19 5.08 -53.63 -0.27 -9.46 16 14 C 0.15 1.63 2.54 -67.75 -0.17 1.46 16 15 C -0.17 -1.82 5.72 -26.59 -0.15 -1.98 16 16 C 0.06 0.60 6.84 37.21 0.25 0.86 16 17 O -0.38 -3.92 10.77 -35.23 -0.38 -4.30 16 18 C 0.07 0.52 6.84 37.20 0.25 0.77 16 19 C -0.16 -1.35 5.61 -26.59 -0.15 -1.50 16 20 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 22 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 23 H 0.40 3.91 8.61 -40.82 -0.35 3.56 16 24 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 283.60 15.07 4.27 4.27 Total: -1.00 -33.53 283.60 -6.39 -39.92 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.55 Total: 0.16 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 0.39 Total: -5.36 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.50 Total: -35.24 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.29 Total: -15.21 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.53 -6.39 -39.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317916605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.153 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds