Wall clock time and date at job start Sun Mar 29 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 119.99940 * 2 1 4 4 H 1.48504 * 109.47212 * 270.00340 * 3 2 1 5 5 H 1.48508 * 109.47000 * 30.00150 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00265 * 3 2 1 7 7 C 1.38794 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00408 * 359.97438 * 7 2 1 9 9 S 1.76205 * 119.99818 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99711 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46799 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00172 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99895 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00121 * 179.97438 * 13 11 10 15 15 C 1.53175 * 109.53763 * 85.44463 * 14 13 11 16 16 C 1.53092 * 109.16179 * 176.85076 * 15 14 13 17 17 O 1.42910 * 109.41107 * 302.39040 * 16 15 14 18 18 C 1.42900 * 114.09727 * 61.16189 * 17 16 15 19 19 C 1.53090 * 109.41229 * 298.83586 * 18 17 16 20 20 H 0.97001 * 120.00176 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47206 * 60.00453 * 10 9 7 22 22 H 1.08998 * 109.47342 * 299.99904 * 10 9 7 23 23 H 0.97006 * 119.99838 * 359.97438 * 13 11 10 24 24 H 1.08997 * 109.61242 * 325.22842 * 14 13 11 25 25 H 1.09006 * 109.52647 * 296.75376 * 15 14 13 26 26 H 1.08998 * 109.52537 * 56.94268 * 15 14 13 27 27 H 1.08998 * 109.48147 * 182.40843 * 16 15 14 28 28 H 1.08997 * 109.48550 * 62.37144 * 16 15 14 29 29 H 1.09003 * 109.47953 * 178.86010 * 18 17 16 30 30 H 1.08995 * 109.49265 * 58.82602 * 18 17 16 31 31 H 1.09001 * 109.52724 * 297.70937 * 19 18 17 32 32 H 1.09000 * 109.52338 * 177.51272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0458 -4.4946 -0.0011 14 6 7.4909 -4.7357 -0.0016 15 6 8.0154 -4.7071 1.4373 16 6 9.5103 -5.0375 1.4338 17 8 9.7130 -6.3145 0.8252 18 6 9.2848 -6.3865 -0.5362 19 6 7.7809 -6.1103 -0.6119 20 1 -0.4850 0.8400 0.0004 21 1 3.6434 -3.4317 -0.8907 22 1 3.6440 -3.4313 0.8893 23 1 5.4291 -5.2434 -0.0011 24 1 7.9903 -3.9639 -0.5872 25 1 7.8628 -3.7144 1.8610 26 1 7.4806 -5.4453 2.0347 27 1 9.8798 -5.0606 2.4590 28 1 10.0495 -4.2764 0.8699 29 1 9.4918 -7.3816 -0.9303 30 1 9.8210 -5.6432 -1.1260 31 1 7.2412 -6.8769 -0.0558 32 1 7.4605 -6.1212 -1.6537 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317916605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:15 Heat of formation + Delta-G solvation = -120.979817 kcal Electronic energy + Delta-G solvation = -15432.319358 eV Core-core repulsion = 12710.597084 eV Total energy + Delta-G solvation = -2721.722274 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15316 -39.73469 -36.27327 -34.68529 -33.04693 -32.09695 -30.44448 -27.87488 -25.42022 -24.60053 -21.77581 -21.50863 -19.87840 -17.95773 -17.86914 -17.12016 -17.00717 -16.57869 -16.41773 -15.81346 -15.66228 -15.04691 -14.87347 -14.62803 -14.47479 -13.73656 -13.35729 -13.31082 -13.02545 -12.68331 -12.57834 -12.32693 -11.96693 -11.88595 -11.45675 -11.18202 -11.09160 -10.59585 -10.54598 -10.15621 -9.01185 -8.52753 -6.23878 0.97521 1.30639 1.45694 1.52868 1.54680 2.17942 2.24729 2.69758 2.85665 2.94173 3.62761 3.76912 3.84777 3.98684 4.08066 4.21352 4.26358 4.42442 4.46365 4.56144 4.70388 4.77922 4.83049 5.03298 5.06225 5.16452 5.43492 5.69501 6.10150 6.21500 6.44310 6.92478 7.16418 8.59780 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.062259 B = 0.004431 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.624957 B = 6317.796948 C = 6543.354521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.531 4.531 8 H 0.062 0.938 9 S -0.175 6.175 10 C -0.112 4.112 11 C 0.536 3.464 12 O -0.561 6.561 13 N -0.708 5.708 14 C 0.141 3.859 15 C -0.164 4.164 16 C 0.066 3.934 17 O -0.397 6.397 18 C 0.060 3.940 19 C -0.154 4.154 20 H 0.277 0.723 21 H 0.114 0.886 22 H 0.113 0.887 23 H 0.417 0.583 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.054 0.946 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.501 -14.375 -0.139 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.051 5.949 10 C -0.263 4.263 11 C 0.322 3.678 12 O -0.439 6.439 13 N -0.361 5.361 14 C 0.036 3.964 15 C -0.203 4.203 16 C -0.011 4.011 17 O -0.316 6.316 18 C -0.017 4.017 19 C -0.192 4.192 20 H 0.087 0.913 21 H 0.132 0.868 22 H 0.131 0.869 23 H 0.254 0.746 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.681 -12.908 -0.048 22.707 hybrid contribution -1.785 -0.238 -0.113 1.804 sum 16.896 -13.147 -0.162 21.409 Atomic orbital electron populations 1.70016 1.07330 1.29065 1.49115 1.25557 0.95251 1.02245 0.92821 0.85870 0.80665 0.79596 0.80252 1.18638 1.18287 1.16102 1.22470 0.90276 0.96715 1.58350 0.91976 1.84701 1.06410 1.06160 1.97593 1.23281 0.95893 0.99653 1.07458 1.19978 0.89379 0.83444 0.75013 1.90681 1.59271 1.43802 1.50193 1.45842 1.08284 1.06837 1.75173 1.21069 0.80226 0.98495 0.96588 1.22572 0.98126 1.02396 0.97210 1.22584 0.93655 0.85173 0.99663 1.87920 1.83607 1.33081 1.26960 1.22728 0.92300 1.03927 0.82727 1.22463 0.98764 0.94942 1.02993 0.91330 0.86794 0.86894 0.74628 0.91201 0.92271 0.90221 0.87330 0.92741 0.86223 0.92490 0.89274 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.81 13.97 21.65 0.30 -55.51 16 2 C 0.05 2.74 5.50 84.86 0.47 3.20 16 3 Si 0.91 44.89 27.74 68.60 1.90 46.79 16 4 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 7 C -0.53 -30.85 10.04 67.95 0.68 -30.16 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 9 S -0.18 -8.81 18.55 -56.49 -1.05 -9.86 16 10 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 11 C 0.54 18.06 7.82 87.66 0.69 18.75 16 12 O -0.56 -23.58 15.52 -3.01 -0.05 -23.62 16 13 N -0.71 -16.27 5.08 -441.97 -2.25 -18.51 16 14 C 0.14 2.90 2.54 45.11 0.11 3.01 16 15 C -0.16 -3.34 5.72 30.68 0.18 -3.16 16 16 C 0.07 1.15 6.84 72.01 0.49 1.64 16 17 O -0.40 -7.12 10.77 -148.98 -1.60 -8.73 16 18 C 0.06 0.79 6.84 72.01 0.49 1.28 16 19 C -0.15 -2.06 5.61 30.68 0.17 -1.89 16 20 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 21 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 22 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 23 H 0.42 6.87 8.61 -92.70 -0.80 6.07 16 24 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 25 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.39 283.60 1.26 -71.13 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.28 Total: 9.36 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 3.72 Total: -11.05 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.94 Total: -74.02 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.65 Total: -32.35 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.86 kcal Total: -72.39 1.26 -71.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317916605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.847 kcal (2) G-P(sol) polarization free energy of solvation -72.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds