Wall clock time and date at job start Sun Mar 29 2020 22:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 108.82387 * 2 1 4 4 C 1.51042 * 108.92119 * 118.61024 * 2 1 3 5 5 C 1.54654 * 109.35742 * 214.72346 * 4 2 1 6 6 N 1.39399 * 111.67206 * 282.58144 * 5 4 2 7 7 C 1.34780 * 118.11147 * 243.14614 * 6 5 4 8 8 O 1.21682 * 120.00264 * 354.68072 * 7 6 5 9 9 C 1.46370 * 119.99763 * 174.68276 * 7 6 5 10 10 H 1.08008 * 120.00406 * 4.96917 * 9 7 6 11 11 C 1.40054 * 120.00194 * 184.97364 * 9 7 6 12 12 N 1.30666 * 119.99692 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00197 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46812 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47012 * 119.99633 * 13 11 9 16 16 H 1.48497 * 109.46836 * 239.99966 * 13 11 9 17 17 C 1.47147 * 123.77295 * 63.12023 * 6 5 4 18 18 C 1.51048 * 106.55784 * 274.24763 * 17 6 5 19 19 S 1.81170 * 111.27502 * 91.76737 * 18 17 6 20 20 O 1.42094 * 109.45374 * 201.20873 * 19 18 17 21 21 H 1.08996 * 109.47490 * 301.38403 * 1 2 3 22 22 H 1.09000 * 109.46948 * 61.38581 * 1 2 3 23 23 H 1.09000 * 109.46572 * 181.38616 * 1 2 3 24 24 H 1.09000 * 109.49023 * 94.75648 * 4 2 1 25 25 H 1.09001 * 109.49059 * 334.68917 * 4 2 1 26 26 H 1.09004 * 109.04503 * 162.01633 * 5 4 2 27 27 H 1.08997 * 109.04372 * 43.14178 * 5 4 2 28 28 H 0.96996 * 119.99964 * 180.02562 * 12 11 9 29 29 H 1.09004 * 110.02648 * 33.50996 * 17 6 5 30 30 H 1.08998 * 110.03349 * 154.98286 * 17 6 5 31 31 H 1.09001 * 109.11477 * 212.20571 * 18 17 6 32 32 H 1.09000 * 109.11554 * 331.28050 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8817 1.0317 0.0000 4 6 2.0198 -0.6842 1.2543 5 6 3.3205 -0.0005 1.7366 6 7 4.4211 -0.3941 0.9771 7 6 5.4144 -1.0617 1.5969 8 8 5.3810 -1.2202 2.8029 9 6 6.5334 -1.5961 0.8193 10 1 6.6049 -1.3872 -0.2380 11 6 7.5115 -2.3785 1.4461 12 7 7.4252 -2.6309 2.7252 13 14 8.9400 -3.0598 0.4538 14 1 8.8073 -2.6327 -0.9623 15 1 10.2179 -2.5459 1.0087 16 1 8.9298 -4.5430 0.5259 17 6 4.5606 -0.1231 -0.4625 18 6 3.8522 -1.2462 -1.1825 19 16 2.1213 -0.8262 -1.5137 20 8 1.3770 -2.0182 -1.7242 21 1 -0.3634 0.5351 0.8773 22 1 -0.3633 0.4922 -0.9022 23 1 -0.3632 -1.0274 0.0249 24 1 2.2183 -1.7347 1.0418 25 1 1.2590 -0.6075 2.0312 26 1 3.4955 -0.2646 2.7796 27 1 3.2037 1.0804 1.6597 28 1 8.1028 -3.1724 3.1594 29 1 4.0952 0.8311 -0.7095 30 1 5.6147 -0.1083 -0.7392 31 1 4.3593 -1.4401 -2.1277 32 1 3.8905 -2.1450 -0.5670 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320748527.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:50 Heat of formation + Delta-G solvation = -68.633135 kcal Electronic energy + Delta-G solvation = -16621.377621 eV Core-core repulsion = 13901.925270 eV Total energy + Delta-G solvation = -2719.452351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.83580 -35.57371 -35.39276 -33.82536 -32.66766 -30.52843 -28.51003 -26.25705 -23.40901 -22.58677 -21.42725 -19.15481 -17.19308 -16.78634 -15.95781 -15.89013 -15.00483 -14.59234 -14.48833 -14.08680 -13.27645 -13.05639 -12.95966 -12.72512 -12.33096 -11.93436 -11.61983 -11.51044 -11.42701 -11.24167 -11.07589 -10.96459 -10.70276 -10.47555 -10.15737 -10.08339 -9.47503 -8.93460 -7.92534 -7.66237 -7.36623 -6.27868 -4.73016 1.81877 2.86387 3.07681 3.16281 3.19834 4.03614 4.05250 4.45267 4.52613 4.94033 5.03852 5.43351 5.47594 5.56347 5.63181 5.66705 5.70507 5.81076 5.90898 6.04099 6.16037 6.23110 6.35501 6.52674 6.60904 6.67511 7.37595 7.65303 8.12378 8.34798 8.94471 9.24831 10.48226 10.66750 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.007657 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.990114 B = 3656.111104 C = 4167.347111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.400 4.400 3 H 0.120 0.880 4 C -0.124 4.124 5 C 0.121 3.879 6 N -0.639 5.639 7 C 0.547 3.453 8 O -0.575 6.575 9 C -0.542 4.542 10 H 0.076 0.924 11 C 0.086 3.914 12 N -0.766 5.766 13 Si 0.906 3.094 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.277 1.277 17 C 0.154 3.846 18 C -0.453 4.453 19 S 1.218 4.782 20 O -0.859 6.859 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.039 0.961 28 H 0.269 0.731 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 8.345 -9.761 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.517 4.517 3 H 0.138 0.862 4 C -0.164 4.164 5 C -0.006 4.006 6 N -0.374 5.374 7 C 0.354 3.646 8 O -0.458 6.458 9 C -0.579 4.579 10 H 0.094 0.906 11 C -0.134 4.134 12 N -0.395 5.395 13 Si 0.730 3.270 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.202 1.202 17 C 0.029 3.971 18 C -0.592 4.592 19 S 1.416 4.584 20 O -0.854 6.854 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.839 7.985 -9.723 14.824 hybrid contribution 0.827 -1.828 1.213 2.345 sum -7.012 6.156 -8.510 12.629 Atomic orbital electron populations 1.21547 0.92654 1.02408 1.02038 1.27352 1.02361 1.09467 1.12554 0.86235 1.22058 0.99099 0.99386 0.95873 1.20080 0.85458 0.96232 0.98811 1.46461 1.20654 1.61980 1.08354 1.18402 0.81767 0.77196 0.87273 1.90585 1.78769 1.61417 1.14995 1.21074 1.07484 1.33323 0.96007 0.90596 1.25769 0.98250 0.94759 0.94630 1.70016 1.31284 1.28344 1.09831 0.86343 0.81031 0.78968 0.80633 1.18624 1.20055 1.20219 1.20696 1.01771 0.93581 0.81040 1.27880 1.15988 1.07884 1.07490 1.69847 0.85720 1.03708 0.99076 1.93071 1.65678 1.49407 1.77267 0.91918 0.92334 0.92418 0.92699 0.91590 0.89067 0.94265 0.92068 0.91834 0.88234 0.86703 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.72 37.16 0.32 -1.20 16 2 C -0.40 -5.19 2.48 -27.71 -0.07 -5.25 16 3 H 0.12 1.23 7.20 -51.92 -0.37 0.86 16 4 C -0.12 -2.10 5.18 -26.85 -0.14 -2.24 16 5 C 0.12 2.32 5.77 -6.81 -0.04 2.28 16 6 N -0.64 -13.59 2.27 -180.19 -0.41 -14.00 16 7 C 0.55 15.05 7.45 -12.99 -0.10 14.96 16 8 O -0.58 -18.31 14.09 5.21 0.07 -18.24 16 9 C -0.54 -14.65 8.68 -35.63 -0.31 -14.96 16 10 H 0.08 1.83 5.83 -52.48 -0.31 1.53 16 11 C 0.09 2.35 5.50 -17.37 -0.10 2.26 16 12 N -0.77 -22.74 11.84 55.55 0.66 -22.08 16 13 Si 0.91 19.74 29.56 -169.99 -5.02 14.72 16 14 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 C 0.15 2.48 5.27 -4.67 -0.02 2.46 16 18 C -0.45 -7.04 5.80 36.18 0.21 -6.83 16 19 S 1.22 15.96 12.87 -107.50 -1.38 14.57 16 20 O -0.86 -16.66 17.74 -35.23 -0.63 -17.29 16 21 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 24 H 0.05 1.10 7.53 -51.93 -0.39 0.71 16 25 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 26 H 0.09 2.06 6.51 -51.93 -0.34 1.72 16 27 H 0.04 0.64 7.62 -51.93 -0.40 0.24 16 28 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 29 H 0.06 0.73 7.47 -51.93 -0.39 0.34 16 30 H 0.10 1.67 5.83 -51.93 -0.30 1.37 16 31 H 0.11 1.49 8.14 -51.90 -0.42 1.06 16 32 H 0.10 2.06 7.71 -51.90 -0.40 1.66 16 LS Contribution 268.59 15.07 4.05 4.05 Total: -1.00 -38.10 268.59 -7.01 -45.11 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.11 Total: 1.69 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -0.24 Total: -8.54 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.25 Total: -36.07 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.55 Total: -35.52 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 15.96 SS G_CDS: -1.38 Total: 14.57 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -38.10 -7.01 -45.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320748527.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.526 kcal (2) G-P(sol) polarization free energy of solvation -38.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds