Wall clock time and date at job start Sun Mar 29 2020 22:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46376 * 119.64730 * 359.73520 * 13 11 10 15 15 C 1.53755 * 109.20649 * 114.90796 * 14 13 11 16 16 S 1.81737 * 108.75425 * 57.83015 * 15 14 13 17 17 O 1.42096 * 109.47393 * 189.30792 * 16 15 14 18 18 C 1.81745 * 102.30708 * 305.34408 * 16 15 14 19 19 C 1.46373 * 119.64350 * 179.97438 * 13 11 10 20 20 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 1.08998 * 109.46293 * 234.91380 * 14 13 11 26 26 H 1.08997 * 109.46875 * 354.90188 * 14 13 11 27 27 H 1.08994 * 109.69558 * 297.98976 * 15 14 13 28 28 H 1.09002 * 109.50381 * 177.55299 * 15 14 13 29 29 H 1.08996 * 109.58595 * 294.74817 * 18 16 15 30 30 H 1.09001 * 109.58278 * 174.33000 * 18 16 15 31 31 H 1.09001 * 109.46936 * 5.09759 * 19 13 11 32 32 H 1.08999 * 109.46728 * 125.08293 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 3.6292 -6.1255 -0.0062 15 6 4.1450 -6.7307 1.3097 16 16 3.4831 -8.4150 1.4772 17 8 3.7692 -8.9092 2.7784 18 6 1.6933 -8.1461 1.3115 19 6 1.4257 -7.3975 0.0019 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5566 0.8902 23 1 2.8718 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 3.9920 -6.7159 -0.8475 26 1 3.9857 -5.0999 -0.1016 27 1 3.8113 -6.1217 2.1498 28 1 5.2343 -6.7664 1.2916 29 1 1.3337 -7.5520 2.1516 30 1 1.1795 -9.1072 1.2945 31 1 0.3587 -7.1937 -0.0882 32 1 1.7509 -8.0097 -0.8392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324690176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:27 Heat of formation + Delta-G solvation = -77.258616 kcal Electronic energy + Delta-G solvation = -15824.900489 eV Core-core repulsion = 13105.074109 eV Total energy + Delta-G solvation = -2719.826380 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75403 -36.37545 -35.71115 -33.62580 -32.19781 -30.87764 -29.83891 -25.94382 -23.91517 -23.28067 -21.26998 -18.96297 -17.58674 -17.12875 -16.10420 -15.74904 -15.38043 -15.30465 -14.86837 -14.60451 -14.42840 -13.74180 -13.47279 -13.03544 -12.38785 -12.27858 -12.18485 -11.96874 -11.79911 -11.53476 -11.15432 -10.98020 -10.61101 -10.11821 -10.02515 -9.63885 -9.25451 -9.06318 -8.71661 -8.48245 -8.36106 -5.99961 -4.04647 1.36575 2.30814 3.03438 3.10915 3.30039 3.37409 3.40326 3.58159 4.43347 4.55605 4.68341 4.85735 4.95980 5.04149 5.20376 5.35286 5.38348 5.53156 5.68759 5.80746 5.83737 6.11520 6.12605 6.58750 6.80563 7.52467 7.69949 7.80075 8.02124 8.32988 8.60012 9.03689 9.59330 11.11045 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.044004 B = 0.004886 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.146929 B = 5729.061167 C = 6098.144667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.131 4.131 11 C 0.512 3.488 12 O -0.527 6.527 13 N -0.637 5.637 14 C 0.131 3.869 15 C -0.459 4.459 16 S 1.237 4.763 17 O -0.859 6.859 18 C -0.455 4.455 19 C 0.132 3.868 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.022 0.978 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.285 -17.648 -3.368 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.302 3.698 12 O -0.401 6.401 13 N -0.373 5.373 14 C 0.006 3.994 15 C -0.598 4.598 16 S 1.435 4.565 17 O -0.854 6.854 18 C -0.594 4.594 19 C 0.008 3.992 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.120 0.880 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.949 -18.377 -3.187 20.687 hybrid contribution -0.313 2.304 1.816 2.950 sum 8.637 -16.073 -1.371 18.298 Atomic orbital electron populations 1.70009 1.06082 1.26531 1.50174 1.25028 0.94821 0.99272 0.95242 0.86531 0.79990 0.83799 0.77622 1.19735 1.20950 1.21031 1.21235 0.92936 0.90947 1.51431 0.92546 1.18924 0.93191 0.89443 0.98637 1.21919 1.00807 0.91890 1.02415 1.21702 0.88508 0.85673 0.73889 1.90666 1.14434 1.87119 1.47922 1.48309 1.06482 1.06366 1.76169 1.21335 0.79525 1.04006 0.94488 1.28087 1.08991 1.18589 1.04145 1.70242 0.88276 0.90425 1.07529 1.93110 1.79369 1.69724 1.43244 1.27961 1.20250 1.06874 1.04307 1.20982 1.00116 0.84103 0.94014 0.92965 0.95709 0.95945 0.90298 0.89858 0.89449 0.87832 0.88906 0.85815 0.89175 0.86099 0.88012 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.94 4.26 -27.89 -0.12 0.83 16 10 C -0.13 -2.56 3.94 -27.88 -0.11 -2.67 16 11 C 0.51 9.46 7.66 -10.98 -0.08 9.37 16 12 O -0.53 -12.04 15.28 5.56 0.08 -11.95 16 13 N -0.64 -8.16 2.78 -173.30 -0.48 -8.64 16 14 C 0.13 1.16 6.17 -3.72 -0.02 1.14 16 15 C -0.46 -4.08 6.67 37.55 0.25 -3.82 16 16 S 1.24 10.54 13.71 -107.50 -1.47 9.07 16 17 O -0.86 -13.32 18.14 -35.23 -0.64 -13.96 16 18 C -0.46 -4.46 6.65 37.26 0.25 -4.21 16 19 C 0.13 1.37 6.22 -4.01 -0.02 1.34 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 22 H 0.02 0.66 8.10 -51.93 -0.42 0.23 16 23 H 0.08 1.44 7.88 -51.93 -0.41 1.03 16 24 H 0.08 1.44 7.66 -51.93 -0.40 1.04 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.98 5.73 -51.93 -0.30 0.68 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.32 6.88 -51.93 -0.36 0.96 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 279.44 15.07 4.21 4.21 Total: -1.00 -39.47 279.44 -7.24 -46.71 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -4.38 Total: -3.83 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.27 Total: -11.52 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.25 Total: -35.19 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.55 Total: -25.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 10.54 SS G_CDS: -1.47 Total: 9.07 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -39.47 -7.24 -46.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324690176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.552 kcal (2) G-P(sol) polarization free energy of solvation -39.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds