Wall clock time and date at job start Sun Mar 29 2020 23:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47394 * 2 1 4 4 C 1.50702 * 109.47173 * 239.99402 * 2 1 3 5 5 H 1.07991 * 119.99962 * 275.01846 * 4 2 1 6 6 C 1.37883 * 119.99527 * 95.01430 * 4 2 1 7 7 N 1.31516 * 119.99730 * 184.91517 * 6 4 2 8 8 Si 1.86792 * 120.00138 * 4.92168 * 6 4 2 9 9 H 1.48500 * 109.47460 * 84.83174 * 8 6 4 10 10 H 1.48508 * 109.46891 * 204.83162 * 8 6 4 11 11 H 1.48500 * 109.47350 * 324.82756 * 8 6 4 12 12 C 1.50704 * 109.46830 * 119.99734 * 2 1 3 13 13 N 1.30454 * 126.18594 * 60.02403 * 12 2 1 14 14 N 1.28668 * 109.50562 * 179.97438 * 13 12 2 15 15 C 1.31216 * 109.23832 * 359.97438 * 14 13 12 16 16 C 1.47879 * 126.36934 * 180.02562 * 15 14 13 17 17 C 1.39961 * 120.92436 * 179.69631 * 16 15 14 18 18 C 1.37960 * 118.99323 * 179.77376 * 17 16 15 19 19 N 1.31920 * 120.90208 * 0.51393 * 18 17 16 20 20 C 1.31931 * 122.05986 * 359.73362 * 19 18 17 21 21 C 1.37958 * 120.89712 * 0.02562 * 20 19 18 22 22 O 1.34336 * 126.18539 * 239.71142 * 12 2 1 23 23 H 1.09002 * 109.47165 * 55.02228 * 1 2 3 24 24 H 1.08995 * 109.47576 * 175.02257 * 1 2 3 25 25 H 1.09004 * 109.47332 * 295.03138 * 1 2 3 26 26 H 0.96996 * 120.00052 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.50097 * 0.02562 * 17 16 15 28 28 H 1.08003 * 119.54531 * 180.23146 * 18 17 16 29 29 H 1.07989 * 119.54901 * 180.02562 * 20 19 18 30 30 H 1.08002 * 120.50313 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1352 -1.7855 -1.2289 6 6 2.3605 0.0120 -2.3580 7 7 2.7062 -0.6133 -3.4621 8 14 2.3143 1.8789 -2.3172 9 1 3.5999 2.3944 -1.7819 10 1 2.1067 2.3990 -3.6927 11 1 1.1993 2.3276 -1.4450 12 6 2.0322 -0.7104 1.2306 13 7 1.7929 -1.9510 1.5553 14 7 2.3781 -2.2243 2.6681 15 6 3.0159 -1.1597 3.0941 16 6 3.8142 -1.0534 4.3344 17 6 4.4551 0.1428 4.6770 18 6 5.1857 0.1989 5.8459 19 7 5.2925 -0.8569 6.6296 20 6 4.7089 -2.0046 6.3417 21 6 3.9550 -2.1480 5.1952 22 8 2.8121 -0.1823 2.1884 23 1 -0.3633 0.5891 -0.8421 24 1 -0.3634 -1.0237 -0.0892 25 1 -0.3634 0.4348 0.9312 26 1 2.9374 -0.1051 -4.2552 27 1 4.3755 1.0098 4.0381 28 1 5.6808 1.1186 6.1208 29 1 4.8229 -2.8431 7.0126 30 1 3.4797 -3.0903 4.9660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326999720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:39 Heat of formation + Delta-G solvation = 43.659021 kcal Electronic energy + Delta-G solvation = -16598.063650 eV Core-core repulsion = 13780.329452 eV Total energy + Delta-G solvation = -2817.734198 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.21914 -41.08503 -37.27631 -36.80935 -34.74312 -33.69953 -32.36759 -30.62024 -27.43394 -26.12369 -25.57193 -24.20539 -23.16925 -22.12466 -19.29581 -19.09584 -18.35942 -17.64458 -17.25153 -16.76954 -16.57247 -15.56398 -15.23868 -14.99953 -14.69564 -14.60057 -14.37289 -13.58595 -13.46869 -13.14943 -12.93920 -12.80140 -12.71986 -12.43975 -12.10662 -11.83551 -11.76415 -11.38769 -10.85711 -10.69263 -10.26458 -10.04995 -8.40553 -6.53087 -0.73279 0.05202 0.59951 1.07210 1.36427 1.36534 1.41098 1.48053 2.27336 2.62029 2.73971 2.95874 3.40181 3.48102 3.65447 3.81321 3.98585 4.10206 4.21016 4.24200 4.49414 4.51033 4.60344 4.77646 4.79670 4.82388 5.03201 5.08145 5.32635 5.45821 5.54422 6.11212 6.55991 6.84123 7.11615 7.20754 8.75250 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.005508 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.151342 B = 5082.148702 C = 5388.568562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.098 3.902 3 H 0.078 0.922 4 C -0.527 4.527 5 H 0.034 0.966 6 C 0.026 3.974 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.226 1.226 12 C 0.219 3.781 13 N -0.324 5.324 14 N -0.288 5.288 15 C 0.170 3.830 16 C 0.013 3.987 17 C -0.145 4.145 18 C 0.110 3.890 19 N -0.488 5.488 20 C 0.110 3.890 21 C -0.131 4.131 22 O -0.226 6.226 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.274 0.726 27 H 0.153 0.847 28 H 0.198 0.802 29 H 0.200 0.800 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 5.695 17.924 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.078 3.922 3 H 0.096 0.904 4 C -0.564 4.564 5 H 0.052 0.948 6 C -0.174 4.174 7 N -0.570 5.570 8 Si 0.760 3.240 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.149 1.149 12 C 0.009 3.991 13 N -0.170 5.170 14 N -0.135 5.135 15 C -0.039 4.039 16 C 0.003 3.997 17 C -0.166 4.166 18 C -0.047 4.047 19 N -0.198 5.198 20 C -0.046 4.046 21 C -0.152 4.152 22 O -0.106 6.106 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.171 0.829 28 H 0.215 0.785 29 H 0.216 0.784 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.791 4.537 18.404 19.159 hybrid contribution 0.024 1.183 -1.620 2.006 sum 2.816 5.720 16.784 17.954 Atomic orbital electron populations 1.21893 0.92778 1.02249 1.01628 1.18143 0.95550 0.95492 0.83061 0.90441 1.20769 1.46125 0.94048 0.95507 0.94756 1.25953 0.92825 1.04541 0.94121 1.70013 1.45396 1.38831 1.02749 0.85865 0.80922 0.78309 0.78938 1.18834 1.20353 1.14906 1.29456 0.88227 0.90491 0.90917 1.74390 1.21935 1.13155 1.07491 1.74530 1.09598 1.23718 1.05703 1.25802 1.01117 0.83208 0.93798 1.17796 0.96495 0.97411 0.88018 1.22518 0.97266 0.97275 0.99578 1.23233 0.94428 0.98187 0.88807 1.67752 1.19370 1.00377 1.32304 1.23250 0.91060 0.96160 0.94103 1.22388 0.99508 0.98706 0.94569 1.84831 1.55213 1.41532 1.28981 0.90586 0.93159 0.92268 0.91642 0.82885 0.78487 0.78375 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.16 71.98 0.66 -4.29 16 2 C 0.10 4.42 2.43 -12.29 -0.03 4.39 16 3 H 0.08 3.20 5.29 -2.39 -0.01 3.19 16 4 C -0.53 -29.22 8.84 25.60 0.23 -28.99 16 5 H 0.03 2.21 8.06 -2.92 -0.02 2.19 16 6 C 0.03 1.41 5.47 84.66 0.46 1.87 16 7 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 8 Si 0.94 39.31 26.99 68.60 1.85 41.16 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.23 -8.22 6.82 99.48 0.68 -7.54 16 12 C 0.22 9.87 6.96 88.31 0.61 10.49 16 13 N -0.32 -15.41 12.22 -165.34 -2.02 -17.43 16 14 N -0.29 -12.18 12.01 -166.30 -2.00 -14.17 16 15 C 0.17 6.25 8.02 87.34 0.70 6.95 16 16 C 0.01 0.35 5.91 -19.89 -0.12 0.23 16 17 C -0.14 -3.14 9.83 22.62 0.22 -2.91 16 18 C 0.11 1.91 11.17 84.61 0.95 2.85 16 19 N -0.49 -9.53 10.34 -196.16 -2.03 -11.56 16 20 C 0.11 1.95 11.17 84.61 0.95 2.90 16 21 C -0.13 -2.93 9.79 22.62 0.22 -2.71 16 22 O -0.23 -9.02 10.76 -7.74 -0.08 -9.10 16 23 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.15 2.98 8.02 -2.91 -0.02 2.96 16 28 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.20 2.03 8.06 -2.92 -0.02 2.01 16 30 H 0.15 3.31 7.95 -2.91 -0.02 3.28 16 Total: -1.00 -69.39 274.25 2.00 -67.38 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.13 Total: 8.29 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 4.85 Total: -9.22 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -5.75 Total: -98.52 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.08 Total: -9.10 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.85 Total: 41.16 kcal Total: -69.39 2.00 -67.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326999720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.043 kcal (2) G-P(sol) polarization free energy of solvation -69.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds