Wall clock time and date at job start Sun Mar 29 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46737 * 2 1 4 4 C 1.50701 * 109.47311 * 119.99847 * 2 1 3 5 5 H 1.08000 * 119.99843 * 120.00225 * 4 2 1 6 6 C 1.37878 * 120.00008 * 300.00300 * 4 2 1 7 7 N 1.31510 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99806 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47445 * 60.00054 * 8 6 4 10 10 H 1.48499 * 109.47270 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47441 * 299.99617 * 8 6 4 12 12 C 1.50702 * 109.47029 * 240.00096 * 2 1 3 13 13 O 1.21280 * 119.99889 * 264.08338 * 12 2 1 14 14 N 1.34777 * 119.99933 * 84.08197 * 12 2 1 15 15 C 1.46382 * 119.64677 * 354.92694 * 14 12 2 16 16 C 1.53244 * 109.48364 * 245.08545 * 15 14 12 17 17 S 1.81745 * 108.79817 * 302.34174 * 16 15 14 18 18 O 1.42096 * 109.47133 * 170.57728 * 17 16 15 19 19 C 1.81747 * 102.30470 * 54.54392 * 17 16 15 20 20 C 1.46379 * 119.64687 * 174.92027 * 14 12 2 21 21 H 1.08999 * 109.46926 * 185.74279 * 1 2 3 22 22 H 1.09007 * 109.47326 * 305.74091 * 1 2 3 23 23 H 1.08997 * 109.47599 * 65.74102 * 1 2 3 24 24 H 0.97006 * 120.00042 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.46622 * 125.08264 * 15 14 12 26 26 H 1.09000 * 109.46769 * 5.08725 * 15 14 12 27 27 H 1.08999 * 109.57954 * 182.55362 * 16 15 14 28 28 H 1.08996 * 109.58120 * 62.13879 * 16 15 14 29 29 H 1.08995 * 109.58257 * 65.24960 * 19 17 16 30 30 H 1.09000 * 109.58007 * 185.67109 * 19 17 16 31 31 H 1.09002 * 109.46537 * 354.91379 * 20 14 12 32 32 H 1.09002 * 109.46956 * 234.92235 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1194 4.0079 9 1 3.8076 -1.1188 4.0077 10 1 1.8280 -0.4192 5.2204 11 1 1.8282 -2.5197 4.0082 12 6 2.0323 -0.7104 -1.2305 13 8 2.3365 -1.8830 -1.1720 14 7 2.1435 -0.0427 -2.3959 15 6 1.6703 1.3396 -2.4864 16 6 0.4900 1.4130 -3.4610 17 16 1.0250 0.7783 -5.0778 18 8 -0.1046 0.6347 -5.9277 19 6 1.6759 -0.8646 -4.6528 20 6 2.7362 -0.7074 -3.5576 21 1 -0.3633 -1.0225 0.1028 22 1 -0.3634 0.6003 0.8342 23 1 -0.3634 0.4222 -0.9369 24 1 0.7095 1.1618 3.4844 25 1 2.4781 1.9773 -2.8455 26 1 1.3498 1.6791 -1.5015 27 1 0.1654 2.4485 -3.5643 28 1 -0.3331 0.8059 -3.0843 29 1 0.8653 -1.4956 -4.2886 30 1 2.1268 -1.3183 -5.5353 31 1 3.1044 -1.6906 -3.2648 32 1 3.5637 -0.1075 -3.9364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330807116.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:37 Heat of formation + Delta-G solvation = -70.519062 kcal Electronic energy + Delta-G solvation = -16426.854397 eV Core-core repulsion = 13707.320266 eV Total energy + Delta-G solvation = -2719.534131 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44947 -36.04547 -35.46727 -33.96527 -31.89069 -30.41011 -29.43867 -25.23622 -24.04732 -23.35251 -21.60416 -18.89184 -17.21542 -16.66473 -16.20466 -15.54052 -15.11649 -14.85854 -14.61767 -14.56286 -14.22076 -13.27147 -13.12271 -12.79926 -12.44786 -11.97753 -11.87181 -11.62345 -11.44826 -11.25204 -11.01920 -10.75120 -10.72446 -10.34752 -10.05741 -9.86281 -9.05344 -8.67350 -8.37321 -8.36106 -8.28531 -6.09470 -4.12637 1.56051 2.49793 3.32218 3.35357 3.38671 3.46047 3.53644 3.78943 4.41617 4.80953 4.95847 5.07995 5.19659 5.24057 5.33454 5.46684 5.75597 5.89319 5.93549 6.03786 6.15605 6.58148 6.75307 6.88939 6.96801 7.34932 7.67976 7.84389 7.98282 8.27576 8.92606 9.07444 9.52462 10.98373 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048309 B = 0.006231 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.468797 B = 4492.793493 C = 4827.822630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.031 3.969 3 H 0.052 0.948 4 C -0.504 4.504 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.541 6.541 14 N -0.638 5.638 15 C 0.128 3.872 16 C -0.454 4.454 17 S 1.231 4.769 18 O -0.863 6.863 19 C -0.453 4.453 20 C 0.132 3.868 21 H 0.034 0.966 22 H 0.092 0.908 23 H 0.011 0.989 24 H 0.262 0.738 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 5.155 -12.566 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 H 0.070 0.930 4 C -0.542 4.542 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.315 3.685 13 O -0.416 6.416 14 N -0.374 5.374 15 C 0.004 3.996 16 C -0.593 4.593 17 S 1.430 4.570 18 O -0.859 6.859 19 C -0.591 4.591 20 C 0.007 3.993 21 H 0.053 0.947 22 H 0.111 0.889 23 H 0.030 0.970 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.129 0.871 27 H 0.141 0.859 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.095 5.050 -13.285 14.790 hybrid contribution -1.493 -1.762 1.700 2.868 sum 2.602 3.288 -11.585 12.320 Atomic orbital electron populations 1.21760 0.96283 1.01030 0.99848 1.18913 0.94168 0.96718 0.89189 0.93046 1.21032 1.31473 1.12626 0.89068 0.91261 1.24929 0.94994 0.95015 0.99093 1.69858 1.36849 1.22938 1.23787 0.86499 0.79243 0.79788 0.81586 1.20141 1.21295 1.20186 1.22151 0.74946 0.87168 0.84257 1.90528 1.49188 1.16967 1.84906 1.48367 1.63617 1.14004 1.11461 1.21279 0.93930 0.83036 1.01374 1.27988 1.06231 1.09315 1.15796 1.70148 1.06413 0.95986 0.84447 1.93086 1.54708 1.83866 1.54223 1.27947 1.07141 1.18253 1.05802 1.20945 0.93211 1.00848 0.84251 0.94693 0.88946 0.96955 0.92800 0.89994 0.87051 0.85941 0.88918 0.89336 0.86408 0.88352 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.58 37.16 0.32 -2.73 16 2 C 0.03 0.75 1.77 -92.92 -0.16 0.58 16 3 H 0.05 1.22 6.51 -51.92 -0.34 0.88 16 4 C -0.50 -13.97 8.33 -34.44 -0.29 -14.25 16 5 H 0.07 2.02 7.01 -52.49 -0.37 1.66 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -24.52 11.38 55.43 0.63 -23.89 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.52 11.53 6.77 -10.98 -0.07 11.45 16 13 O -0.54 -13.76 15.11 5.56 0.08 -13.68 16 14 N -0.64 -10.34 2.79 -173.58 -0.48 -10.82 16 15 C 0.13 1.63 5.53 -3.98 -0.02 1.61 16 16 C -0.45 -5.34 6.57 37.28 0.24 -5.10 16 17 S 1.23 13.11 13.71 -107.50 -1.47 11.64 16 18 O -0.86 -14.85 18.14 -35.23 -0.64 -15.49 16 19 C -0.45 -5.37 6.65 37.28 0.25 -5.12 16 20 C 0.13 1.70 6.21 -3.98 -0.02 1.67 16 21 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.09 2.30 6.25 -51.93 -0.32 1.98 16 23 H 0.01 0.23 6.36 -51.93 -0.33 -0.10 16 24 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.11 1.65 4.88 -51.93 -0.25 1.39 16 27 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.37 7.35 -51.93 -0.38 0.98 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.50 6.91 -51.93 -0.36 1.14 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 270.13 15.07 4.07 4.07 Total: -1.00 -36.24 270.13 -6.71 -42.95 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.03 Total: -0.86 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 0.14 Total: -10.33 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.15 Total: -34.71 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.56 Total: -29.17 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 13.11 SS G_CDS: -1.47 Total: 11.64 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -36.24 -6.71 -42.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330807116.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.567 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds