Wall clock time and date at job start Sun Mar 29 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46737 * 2 1 4 4 C 1.50701 * 109.47311 * 119.99847 * 2 1 3 5 5 H 1.08000 * 119.99843 * 120.00225 * 4 2 1 6 6 C 1.37878 * 120.00008 * 300.00300 * 4 2 1 7 7 N 1.31510 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99806 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47445 * 60.00054 * 8 6 4 10 10 H 1.48499 * 109.47270 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47441 * 299.99617 * 8 6 4 12 12 C 1.50702 * 109.47029 * 240.00096 * 2 1 3 13 13 O 1.21280 * 119.99889 * 264.08338 * 12 2 1 14 14 N 1.34777 * 119.99933 * 84.08197 * 12 2 1 15 15 C 1.46382 * 119.64677 * 354.92694 * 14 12 2 16 16 C 1.53244 * 109.48364 * 245.08545 * 15 14 12 17 17 S 1.81745 * 108.79817 * 302.34174 * 16 15 14 18 18 O 1.42096 * 109.47133 * 170.57728 * 17 16 15 19 19 C 1.81747 * 102.30470 * 54.54392 * 17 16 15 20 20 C 1.46379 * 119.64687 * 174.92027 * 14 12 2 21 21 H 1.08999 * 109.46926 * 185.74279 * 1 2 3 22 22 H 1.09007 * 109.47326 * 305.74091 * 1 2 3 23 23 H 1.08997 * 109.47599 * 65.74102 * 1 2 3 24 24 H 0.97006 * 120.00042 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.46622 * 125.08264 * 15 14 12 26 26 H 1.09000 * 109.46769 * 5.08725 * 15 14 12 27 27 H 1.08999 * 109.57954 * 182.55362 * 16 15 14 28 28 H 1.08996 * 109.58120 * 62.13879 * 16 15 14 29 29 H 1.08995 * 109.58257 * 65.24960 * 19 17 16 30 30 H 1.09000 * 109.58007 * 185.67109 * 19 17 16 31 31 H 1.09002 * 109.46537 * 354.91379 * 20 14 12 32 32 H 1.09002 * 109.46956 * 234.92235 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1194 4.0079 9 1 3.8076 -1.1188 4.0077 10 1 1.8280 -0.4192 5.2204 11 1 1.8282 -2.5197 4.0082 12 6 2.0323 -0.7104 -1.2305 13 8 2.3365 -1.8830 -1.1720 14 7 2.1435 -0.0427 -2.3959 15 6 1.6703 1.3396 -2.4864 16 6 0.4900 1.4130 -3.4610 17 16 1.0250 0.7783 -5.0778 18 8 -0.1046 0.6347 -5.9277 19 6 1.6759 -0.8646 -4.6528 20 6 2.7362 -0.7074 -3.5576 21 1 -0.3633 -1.0225 0.1028 22 1 -0.3634 0.6003 0.8342 23 1 -0.3634 0.4222 -0.9369 24 1 0.7095 1.1618 3.4844 25 1 2.4781 1.9773 -2.8455 26 1 1.3498 1.6791 -1.5015 27 1 0.1654 2.4485 -3.5643 28 1 -0.3331 0.8059 -3.0843 29 1 0.8653 -1.4956 -4.2886 30 1 2.1268 -1.3183 -5.5353 31 1 3.1044 -1.6906 -3.2648 32 1 3.5637 -0.1075 -3.9364 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330807116.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:37 Heat of formation + Delta-G solvation = -98.489505 kcal Electronic energy + Delta-G solvation = -16428.067287 eV Core-core repulsion = 13707.320266 eV Total energy + Delta-G solvation = -2720.747021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99101 -37.43194 -36.74607 -35.90209 -33.26629 -32.01829 -30.74266 -27.29393 -25.40554 -24.56389 -23.12373 -20.30704 -18.47383 -18.29899 -17.86438 -17.12072 -16.29963 -16.15931 -16.07600 -15.73505 -15.52740 -14.89867 -14.71853 -14.28502 -13.79794 -13.34038 -13.25074 -13.07392 -12.96624 -12.67266 -12.64269 -12.45869 -12.34573 -12.27912 -12.04086 -11.15459 -10.91634 -10.61396 -10.23496 -9.68720 -9.32342 -8.17323 -6.27064 0.63820 1.40746 1.42290 1.50391 1.56044 1.84314 2.16822 2.45259 2.77024 3.12971 3.75061 3.88078 4.12044 4.14184 4.22516 4.49043 4.57245 4.66635 4.79826 4.91103 4.94806 4.96186 5.00137 5.11582 5.41441 5.66731 5.73365 5.87515 6.14002 6.51001 6.78592 7.36634 7.46571 8.88688 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.048309 B = 0.006231 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.468797 B = 4492.793493 C = 4827.822630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.027 3.973 3 H 0.058 0.942 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.274 1.274 11 H -0.283 1.283 12 C 0.519 3.481 13 O -0.588 6.588 14 N -0.629 5.629 15 C 0.119 3.881 16 C -0.459 4.459 17 S 1.325 4.675 18 O -0.924 6.924 19 C -0.456 4.456 20 C 0.126 3.874 21 H 0.009 0.991 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.266 0.734 25 H 0.143 0.857 26 H 0.090 0.910 27 H 0.155 0.845 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.149 0.851 31 H 0.071 0.929 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 6.825 -13.840 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.006 3.994 3 H 0.076 0.924 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.209 1.209 12 C 0.310 3.690 13 O -0.468 6.468 14 N -0.363 5.363 15 C -0.004 4.004 16 C -0.598 4.598 17 S 1.524 4.476 18 O -0.920 6.920 19 C -0.594 4.594 20 C 0.003 3.997 21 H 0.029 0.971 22 H 0.093 0.907 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.160 0.840 26 H 0.108 0.892 27 H 0.173 0.827 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.167 0.833 31 H 0.089 0.911 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.210 6.768 -14.599 16.914 hybrid contribution -1.843 -2.244 2.053 3.556 sum 3.367 4.524 -12.546 13.755 Atomic orbital electron populations 1.21566 0.96132 0.99216 1.00626 1.18832 0.94280 0.96778 0.89503 0.92434 1.21207 1.32016 1.12489 0.91269 0.93828 1.25550 0.95109 0.95688 1.01297 1.69924 1.36947 1.23405 1.24476 0.85683 0.79008 0.78434 0.78958 1.19534 1.19893 1.20879 1.21726 0.75021 0.86545 0.85695 1.90499 1.51572 1.18747 1.85993 1.48327 1.62232 1.15152 1.10613 1.21645 0.96227 0.81574 1.00986 1.28071 1.04782 1.10961 1.15939 1.69419 1.03158 0.93295 0.81766 1.92962 1.57213 1.84675 1.57144 1.28032 1.06036 1.18801 1.06559 1.21294 0.94814 1.00598 0.82966 0.97131 0.90673 0.94027 0.92490 0.83970 0.89189 0.82689 0.92237 0.93110 0.83280 0.91053 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.58 71.98 0.62 -4.95 16 2 C 0.03 1.32 1.77 -12.28 -0.02 1.30 16 3 H 0.06 2.72 6.51 -2.38 -0.02 2.70 16 4 C -0.53 -30.28 8.33 25.60 0.21 -30.07 16 5 H 0.04 2.66 7.01 -2.91 -0.02 2.64 16 6 C 0.02 1.28 5.30 84.66 0.45 1.73 16 7 N -0.91 -49.90 11.38 21.45 0.24 -49.66 16 8 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.52 23.14 6.77 87.66 0.59 23.74 16 13 O -0.59 -31.03 15.11 -3.03 -0.05 -31.08 16 14 N -0.63 -19.31 2.79 -821.46 -2.29 -21.60 16 15 C 0.12 2.62 5.53 86.48 0.48 3.10 16 16 C -0.46 -9.45 6.57 72.06 0.47 -8.97 16 17 S 1.32 23.85 13.71 -56.49 -0.77 23.08 16 18 O -0.92 -29.91 18.14 -148.98 -2.70 -32.61 16 19 C -0.46 -9.77 6.65 72.06 0.48 -9.29 16 20 C 0.13 2.92 6.21 86.48 0.54 3.46 16 21 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 22 H 0.07 3.81 6.25 -2.38 -0.01 3.80 16 23 H 0.04 1.66 6.36 -2.39 -0.02 1.65 16 24 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 25 H 0.14 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.09 2.47 4.88 -2.39 -0.01 2.46 16 27 H 0.16 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 1.67 7.35 -2.39 -0.02 1.65 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 2.12 6.91 -2.39 -0.02 2.10 16 32 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -82.79 270.13 1.40 -81.39 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.12 Total: 4.20 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 3.82 Total: -19.96 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -2.05 Total: -71.26 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -2.75 Total: -63.69 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 23.85 SS G_CDS: -0.77 Total: 23.08 kcal Total: -82.79 1.40 -81.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330807116.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.098 kcal (2) G-P(sol) polarization free energy of solvation -82.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds