Wall clock time and date at job start Sun Mar 29 2020 23:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 115.56269 * 2 1 4 4 C 1.53001 * 117.50060 * 145.68875 * 2 1 3 5 5 H 1.09005 * 117.51070 * 0.02562 * 4 2 1 6 6 C 1.52994 * 117.49884 * 214.97918 * 4 2 1 7 7 N 1.46906 * 109.46940 * 174.98545 * 6 4 2 8 8 C 1.47959 * 110.99935 * 190.00064 * 7 6 4 9 9 C 1.53931 * 86.17980 * 222.41618 * 8 7 6 10 10 O 1.42900 * 113.73780 * 269.25852 * 9 8 7 11 11 C 1.50700 * 113.73485 * 138.07885 * 9 8 7 12 12 H 1.08004 * 119.99934 * 13.32247 * 11 9 8 13 13 C 1.37878 * 120.00453 * 193.05029 * 11 9 8 14 14 N 1.31519 * 119.99512 * 6.36763 * 13 11 9 15 15 Si 1.86799 * 120.00264 * 186.37623 * 13 11 9 16 16 H 1.48497 * 109.47119 * 94.76155 * 15 13 11 17 17 H 1.48495 * 109.47114 * 214.76282 * 15 13 11 18 18 H 1.48503 * 109.46952 * 334.76292 * 15 13 11 19 19 C 1.48185 * 111.07098 * 90.56724 * 7 6 4 20 20 C 1.52996 * 117.49796 * 214.31057 * 2 1 3 21 21 H 1.09005 * 117.51820 * 145.02617 * 20 2 1 22 22 Cl 1.80299 * 117.50024 * 0.02562 * 20 2 1 23 23 H 1.08997 * 109.46976 * 274.31329 * 1 2 3 24 24 H 1.09000 * 109.47132 * 34.31139 * 1 2 3 25 25 H 1.08999 * 109.47331 * 154.30874 * 1 2 3 26 26 H 1.09002 * 109.47099 * 54.99152 * 6 4 2 27 27 H 1.08999 * 109.47342 * 294.98444 * 6 4 2 28 28 H 1.09004 * 113.75747 * 108.10026 * 8 7 6 29 29 H 1.08994 * 113.76005 * 336.73837 * 8 7 6 30 30 H 0.96696 * 114.00278 * 162.91142 * 10 9 8 31 31 H 0.96998 * 119.99486 * 179.97438 * 14 13 11 32 32 H 1.09000 * 113.75994 * 23.23981 * 19 7 6 33 33 H 1.09000 * 113.82513 * 251.81516 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7650 5 1 1.6114 -1.8589 1.2680 6 6 3.5490 -0.7759 1.4714 7 7 4.0096 -1.9376 2.2436 8 6 5.1398 -1.5733 3.1263 9 6 5.7770 -2.9042 2.6879 10 8 5.4443 -4.0073 3.5332 11 6 7.2539 -2.8055 2.4052 12 1 7.8064 -1.9317 2.7178 13 6 7.9011 -3.8331 1.7523 14 7 7.2105 -4.8411 1.2657 15 14 9.7587 -3.7938 1.5592 16 1 10.3873 -4.5653 2.6614 17 1 10.1337 -4.3980 0.2556 18 1 10.2316 -2.3870 1.6072 19 6 4.8969 -2.8009 1.4291 20 6 2.2364 -1.1210 -0.7650 21 1 3.1716 -0.8755 -1.2683 22 17 1.2022 -2.3405 -1.5981 23 1 -0.3633 0.0773 1.0247 24 1 -0.3633 0.8488 -0.5793 25 1 -0.3634 -0.9260 -0.4455 26 1 3.3890 0.0670 2.1438 27 1 4.3023 -0.5110 0.7294 28 1 4.8777 -1.5392 4.1838 29 1 5.6898 -0.6927 2.7947 30 1 5.6136 -4.8724 3.1359 31 1 7.6658 -5.5639 0.8061 32 1 5.3759 -2.2801 0.6000 33 1 4.4413 -3.7457 1.1330 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334217708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:39 Heat of formation + Delta-G solvation = -3.619509 kcal Electronic energy + Delta-G solvation = -15952.970286 eV Core-core repulsion = 13234.293431 eV Total energy + Delta-G solvation = -2718.676855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.092 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.24099 -37.77997 -35.39095 -34.04809 -32.22161 -29.86897 -27.76469 -25.71302 -25.04455 -22.53087 -20.75165 -20.25601 -18.67348 -17.10926 -15.67025 -15.26581 -15.09365 -14.58983 -14.25051 -13.81537 -13.50453 -12.86596 -12.83334 -12.27421 -12.02441 -11.75317 -11.65193 -11.46511 -11.32342 -11.08509 -10.95666 -10.61057 -10.57276 -10.39121 -10.10827 -9.68355 -9.45414 -9.15913 -8.66148 -8.30451 -7.77172 -6.22062 -4.31125 2.24916 3.21412 3.29386 3.31616 3.56528 4.27959 4.42030 4.58634 4.89611 4.98523 5.11135 5.22331 5.49096 5.60127 5.71590 5.73727 5.79167 5.87506 5.92819 6.03425 6.16871 6.29549 6.43110 6.47114 6.66363 7.09011 7.18220 7.32870 7.74685 7.97373 8.09740 8.70484 9.36070 9.40686 10.84319 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.031480 B = 0.005721 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.240653 B = 4892.754270 C = 5241.422187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 H 0.113 0.887 4 C -0.112 4.112 5 H 0.122 0.878 6 C 0.047 3.953 7 N -0.482 5.482 8 C 0.012 3.988 9 C 0.240 3.760 10 O -0.568 6.568 11 C -0.540 4.540 12 H 0.063 0.937 13 C 0.074 3.926 14 N -0.889 5.889 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.004 3.996 20 C -0.075 4.075 21 H 0.134 0.866 22 Cl -0.148 7.148 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.377 0.623 31 H 0.267 0.733 32 H 0.059 0.941 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 7.958 -3.931 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.164 4.164 3 H 0.131 0.869 4 C -0.131 4.131 5 H 0.140 0.860 6 C -0.082 4.082 7 N -0.205 5.205 8 C -0.117 4.117 9 C 0.199 3.801 10 O -0.375 6.375 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.129 4.129 14 N -0.527 5.527 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.125 4.125 20 C -0.118 4.118 21 H 0.152 0.848 22 Cl -0.121 7.121 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.225 0.775 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.110 7.921 -3.420 13.291 hybrid contribution 1.868 -0.113 -1.193 2.219 sum -8.242 7.808 -4.613 12.255 Atomic orbital electron populations 1.21449 0.92098 1.02934 1.02208 1.22877 0.96323 0.94560 1.02625 0.86923 1.22912 0.99395 1.00233 0.90570 0.86005 1.22240 0.93763 0.95495 0.96700 1.68528 1.26911 1.11683 1.13373 1.24039 0.91092 0.98524 0.98048 1.19825 0.91426 0.83375 0.85437 1.86121 1.88540 1.17376 1.45442 1.21549 0.93861 1.04565 1.37900 0.91908 1.25028 0.98731 0.95172 0.93999 1.69824 1.35766 1.10363 1.36741 0.86510 0.85140 0.78379 0.77554 1.20394 1.21117 1.19799 1.24602 0.93137 0.96831 0.97944 1.25345 0.97329 0.94770 0.94404 0.84850 1.98672 1.71723 1.60713 1.80983 0.91811 0.92190 0.91261 0.90949 0.93943 0.90723 0.91660 0.77451 0.92338 0.92243 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 10.08 37.16 0.37 -0.96 16 2 C -0.14 -1.66 6.13 -90.62 -0.56 -2.22 16 3 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 4 C -0.11 -1.61 5.56 -90.62 -0.50 -2.12 16 5 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 6 C 0.05 0.76 5.08 -3.82 -0.02 0.74 16 7 N -0.48 -9.79 6.16 -238.06 -1.47 -11.25 16 8 C 0.01 0.25 7.34 -2.76 -0.02 0.23 16 9 C 0.24 5.98 1.22 -90.84 -0.11 5.87 16 10 O -0.57 -14.86 13.44 -35.23 -0.47 -15.34 16 11 C -0.54 -14.38 8.58 -34.44 -0.30 -14.67 16 12 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 13 C 0.07 1.95 5.40 -17.82 -0.10 1.86 16 14 N -0.89 -23.82 11.88 55.43 0.66 -23.16 16 15 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.00 0.08 6.91 -2.64 -0.02 0.06 16 20 C -0.08 -1.00 6.66 -26.73 -0.18 -1.18 16 21 H 0.13 1.73 8.03 -51.93 -0.42 1.32 16 22 Cl -0.15 -2.08 27.40 -51.86 -1.42 -3.50 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.77 6.12 -51.93 -0.32 0.45 16 26 H 0.07 1.06 8.08 -51.93 -0.42 0.65 16 27 H 0.04 0.69 7.12 -51.93 -0.37 0.32 16 28 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.07 1.31 7.87 -51.93 -0.41 0.90 16 30 H 0.38 9.77 8.00 45.56 0.36 10.14 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.06 1.39 7.44 -51.93 -0.39 1.00 16 33 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -27.23 290.34 -8.81 -36.04 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.04 Total: 9.79 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.42 Total: -12.39 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.81 Total: -34.41 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.47 Total: -15.34 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.42 Total: -3.50 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.23 -8.81 -36.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334217708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.422 kcal (2) G-P(sol) polarization free energy of solvation -27.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds