Wall clock time and date at job start Sun Mar 29 2020 23:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 115.56269 * 2 1 4 4 C 1.53001 * 117.50060 * 145.68875 * 2 1 3 5 5 H 1.09005 * 117.51070 * 0.02562 * 4 2 1 6 6 C 1.52994 * 117.49884 * 214.97918 * 4 2 1 7 7 N 1.46906 * 109.46940 * 174.98545 * 6 4 2 8 8 C 1.47959 * 110.99935 * 190.00064 * 7 6 4 9 9 C 1.53931 * 86.17980 * 222.41618 * 8 7 6 10 10 O 1.42900 * 113.73780 * 269.25852 * 9 8 7 11 11 C 1.50700 * 113.73485 * 138.07885 * 9 8 7 12 12 H 1.08004 * 119.99934 * 13.32247 * 11 9 8 13 13 C 1.37878 * 120.00453 * 193.05029 * 11 9 8 14 14 N 1.31519 * 119.99512 * 6.36763 * 13 11 9 15 15 Si 1.86799 * 120.00264 * 186.37623 * 13 11 9 16 16 H 1.48497 * 109.47119 * 94.76155 * 15 13 11 17 17 H 1.48495 * 109.47114 * 214.76282 * 15 13 11 18 18 H 1.48503 * 109.46952 * 334.76292 * 15 13 11 19 19 C 1.48185 * 111.07098 * 90.56724 * 7 6 4 20 20 C 1.52996 * 117.49796 * 214.31057 * 2 1 3 21 21 H 1.09005 * 117.51820 * 145.02617 * 20 2 1 22 22 Cl 1.80299 * 117.50024 * 0.02562 * 20 2 1 23 23 H 1.08997 * 109.46976 * 274.31329 * 1 2 3 24 24 H 1.09000 * 109.47132 * 34.31139 * 1 2 3 25 25 H 1.08999 * 109.47331 * 154.30874 * 1 2 3 26 26 H 1.09002 * 109.47099 * 54.99152 * 6 4 2 27 27 H 1.08999 * 109.47342 * 294.98444 * 6 4 2 28 28 H 1.09004 * 113.75747 * 108.10026 * 8 7 6 29 29 H 1.08994 * 113.76005 * 336.73837 * 8 7 6 30 30 H 0.96696 * 114.00278 * 162.91142 * 10 9 8 31 31 H 0.96998 * 119.99486 * 179.97438 * 14 13 11 32 32 H 1.09000 * 113.75994 * 23.23981 * 19 7 6 33 33 H 1.09000 * 113.82513 * 251.81516 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7650 5 1 1.6114 -1.8589 1.2680 6 6 3.5490 -0.7759 1.4714 7 7 4.0096 -1.9376 2.2436 8 6 5.1398 -1.5733 3.1263 9 6 5.7770 -2.9042 2.6879 10 8 5.4443 -4.0073 3.5332 11 6 7.2539 -2.8055 2.4052 12 1 7.8064 -1.9317 2.7178 13 6 7.9011 -3.8331 1.7523 14 7 7.2105 -4.8411 1.2657 15 14 9.7587 -3.7938 1.5592 16 1 10.3873 -4.5653 2.6614 17 1 10.1337 -4.3980 0.2556 18 1 10.2316 -2.3870 1.6072 19 6 4.8969 -2.8009 1.4291 20 6 2.2364 -1.1210 -0.7650 21 1 3.1716 -0.8755 -1.2683 22 17 1.2022 -2.3405 -1.5981 23 1 -0.3633 0.0773 1.0247 24 1 -0.3633 0.8488 -0.5793 25 1 -0.3634 -0.9260 -0.4455 26 1 3.3890 0.0670 2.1438 27 1 4.3023 -0.5110 0.7294 28 1 4.8777 -1.5392 4.1838 29 1 5.6898 -0.6927 2.7947 30 1 5.6136 -4.8724 3.1359 31 1 7.6658 -5.5639 0.8061 32 1 5.3759 -2.2801 0.6000 33 1 4.4413 -3.7457 1.1330 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334217708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:39 Heat of formation + Delta-G solvation = -22.692778 kcal Electronic energy + Delta-G solvation = -15953.797365 eV Core-core repulsion = 13234.293431 eV Total energy + Delta-G solvation = -2719.503934 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86216 -38.98204 -36.54916 -35.84811 -34.25574 -31.18666 -29.08240 -27.42630 -26.81984 -24.12466 -21.87804 -21.32532 -20.52245 -19.05581 -17.19272 -16.96276 -16.56964 -16.13467 -15.84202 -15.40823 -14.73222 -14.32850 -14.05591 -13.81905 -13.40152 -13.37716 -13.12518 -12.94370 -12.74256 -12.51331 -12.39033 -12.28606 -12.19654 -11.97770 -11.66683 -11.05842 -10.77775 -10.62677 -10.54607 -10.13613 -9.53485 -8.21285 -6.38000 1.19632 1.40778 1.44039 1.52714 2.38449 2.53136 2.99270 3.08252 3.53264 3.65159 3.88104 4.04744 4.16199 4.26662 4.37812 4.49382 4.53472 4.62486 4.69154 4.75254 4.91878 4.93948 5.05851 5.18147 5.18755 5.40525 5.42991 5.52649 5.71868 6.09804 6.35100 6.66636 7.32145 7.36156 8.83568 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.031480 B = 0.005721 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.240653 B = 4892.754270 C = 5241.422187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 H 0.137 0.863 4 C -0.129 4.129 5 H 0.104 0.896 6 C 0.049 3.951 7 N -0.485 5.485 8 C 0.021 3.979 9 C 0.213 3.787 10 O -0.578 6.578 11 C -0.562 4.562 12 H 0.060 0.940 13 C 0.032 3.968 14 N -0.909 5.909 15 Si 0.958 3.042 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.020 3.980 20 C -0.085 4.085 21 H 0.137 0.863 22 Cl -0.158 7.158 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.372 0.628 31 H 0.268 0.732 32 H 0.052 0.948 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 9.702 -4.255 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.132 4.132 3 H 0.154 0.846 4 C -0.148 4.148 5 H 0.122 0.878 6 C -0.079 4.079 7 N -0.207 5.207 8 C -0.107 4.107 9 C 0.173 3.827 10 O -0.384 6.384 11 C -0.600 4.600 12 H 0.078 0.922 13 C -0.169 4.169 14 N -0.548 5.548 15 Si 0.783 3.217 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.110 4.110 20 C -0.128 4.128 21 H 0.155 0.845 22 Cl -0.131 7.131 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.220 0.780 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.235 9.680 -3.739 14.575 hybrid contribution 1.865 -0.649 -1.079 2.250 sum -8.371 9.030 -4.818 13.222 Atomic orbital electron populations 1.21499 0.91057 1.03272 1.02991 1.23022 0.97015 0.94394 0.98729 0.84572 1.22721 0.98924 1.02186 0.90940 0.87756 1.22287 0.94460 0.94348 0.96853 1.68436 1.25770 1.13330 1.13173 1.23978 0.91129 0.97102 0.98529 1.20197 0.91391 0.84439 0.86700 1.86107 1.88608 1.17603 1.46126 1.21821 0.95053 1.04833 1.38300 0.92191 1.25729 1.02691 0.94866 0.93655 1.69915 1.37182 1.10735 1.36962 0.85553 0.80218 0.78484 0.77405 1.20338 1.20740 1.19192 1.24250 0.93148 0.96428 0.97145 1.25489 0.98067 0.95611 0.93644 0.84509 1.98670 1.71940 1.61390 1.81117 0.91068 0.90143 0.92381 0.88858 0.93748 0.90405 0.90189 0.77983 0.92238 0.92955 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 10.08 71.98 0.73 -1.61 16 2 C -0.11 -2.27 6.13 -10.79 -0.07 -2.33 16 3 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.13 -3.50 5.56 -10.80 -0.06 -3.56 16 5 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 6 C 0.05 1.50 5.08 86.30 0.44 1.94 16 7 N -0.48 -19.33 6.16 -910.30 -5.61 -24.93 16 8 C 0.02 0.88 7.34 86.41 0.63 1.52 16 9 C 0.21 10.66 1.22 -10.90 -0.01 10.65 16 10 O -0.58 -30.76 13.44 -148.98 -2.00 -32.76 16 11 C -0.56 -29.90 8.58 25.60 0.22 -29.68 16 12 H 0.06 3.14 7.82 -2.91 -0.02 3.11 16 13 C 0.03 1.68 5.40 84.65 0.46 2.14 16 14 N -0.91 -49.17 11.88 21.45 0.25 -48.91 16 15 Si 0.96 41.71 29.54 68.60 2.03 43.73 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 19 C 0.02 0.91 6.91 86.37 0.60 1.50 16 20 C -0.08 -2.14 6.66 30.59 0.20 -1.94 16 21 H 0.14 3.35 8.03 -2.38 -0.02 3.33 16 22 Cl -0.16 -4.34 27.40 -2.72 -0.07 -4.41 16 23 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.19 6.12 -2.39 -0.01 1.17 16 26 H 0.09 2.46 8.08 -2.39 -0.02 2.44 16 27 H 0.04 1.36 7.12 -2.39 -0.02 1.34 16 28 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 29 H 0.08 3.07 7.87 -2.39 -0.02 3.05 16 30 H 0.37 19.91 8.00 -74.06 -0.59 19.31 16 31 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.05 2.46 7.44 -2.39 -0.02 2.44 16 33 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -57.52 290.34 -1.75 -59.27 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.51 Total: 29.39 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 3.14 Total: -21.38 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -5.35 Total: -73.84 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -2.00 Total: -32.76 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 17 Polarization: -4.34 SS G_CDS: -0.07 Total: -4.41 kcal Total: -57.52 -1.75 -59.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334217708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.581 kcal (2) G-P(sol) polarization free energy of solvation -57.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds