Wall clock time and date at job start Sun Mar 29 2020 22:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99532 * 2 1 4 4 O 1.20824 * 120.00757 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99744 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47075 * 179.97438 * 5 3 2 7 7 C 1.37102 * 119.99810 * 89.99596 * 6 5 3 8 8 H 1.08000 * 119.99989 * 49.94380 * 7 6 5 9 9 C 1.38943 * 120.00025 * 230.21260 * 7 6 5 10 10 N 1.31410 * 120.00128 * 198.97136 * 9 7 6 11 11 Si 1.86800 * 120.00154 * 18.97278 * 9 7 6 12 12 H 1.48498 * 109.47438 * 91.55748 * 11 9 7 13 13 H 1.48502 * 109.47214 * 211.55989 * 11 9 7 14 14 H 1.48502 * 109.46907 * 331.56008 * 11 9 7 15 15 C 1.34775 * 119.99978 * 269.99509 * 6 5 3 16 16 O 1.21281 * 120.00038 * 5.39201 * 15 6 5 17 17 C 1.50704 * 119.99786 * 185.38294 * 15 6 5 18 18 H 1.08998 * 115.55607 * 321.20677 * 17 15 6 19 19 C 1.53002 * 117.49551 * 175.53172 * 17 15 6 20 20 C 1.53002 * 60.00162 * 252.51222 * 19 17 15 21 21 H 1.09006 * 117.49575 * 107.48902 * 20 19 17 22 22 F 1.39896 * 117.50006 * 252.51325 * 20 19 17 23 23 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47480 * 300.00514 * 1 2 3 25 25 H 1.09001 * 109.46951 * 60.00785 * 1 2 3 26 26 H 1.08999 * 109.47215 * 59.99059 * 5 3 2 27 27 H 1.09001 * 109.46593 * 299.99546 * 5 3 2 28 28 H 0.97006 * 120.00365 * 180.02562 * 10 9 7 29 29 H 1.08996 * 117.49789 * 0.02562 * 19 17 15 30 30 H 1.09004 * 117.49318 * 145.02846 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 4.1763 3.3375 1.1860 8 1 4.7918 2.8938 1.9546 9 6 3.5772 4.5723 1.4026 10 7 4.0351 5.3691 2.3419 11 14 2.1208 5.0998 0.3585 12 1 0.8592 4.6866 1.0238 13 1 2.1354 6.5761 0.1982 14 1 2.2100 4.4560 -0.9768 15 6 4.1723 3.3258 -1.1685 16 8 3.9066 2.7758 -2.2163 17 6 4.7155 4.7315 -1.1719 18 1 4.3453 5.3805 -0.3783 19 6 5.0082 5.3724 -2.5300 20 6 6.1623 4.9286 -1.6290 21 1 6.7212 4.0415 -1.9273 22 9 6.9091 5.9281 -0.9963 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 3.9557 0.7809 -0.8907 27 1 3.9563 0.7807 0.8892 28 1 3.6166 6.2310 2.4933 29 1 4.8074 4.7776 -3.4209 30 1 4.8308 6.4433 -2.6297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338584220.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:08 Heat of formation + Delta-G solvation = -117.656097 kcal Electronic energy + Delta-G solvation = -18636.425608 eV Core-core repulsion = 15348.634285 eV Total energy + Delta-G solvation = -3287.791323 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.08840 -40.10479 -39.01598 -36.11625 -35.12452 -34.70820 -32.19855 -29.06307 -26.82199 -24.77026 -23.31087 -21.91920 -20.62974 -19.29804 -17.96502 -17.19163 -16.51875 -16.04396 -15.85920 -15.63868 -15.18155 -14.48520 -14.01875 -13.95754 -13.60551 -13.15911 -12.86490 -12.68725 -12.37737 -12.12971 -11.76517 -11.64057 -11.31103 -10.80699 -10.58682 -10.44835 -10.33290 -9.96384 -9.59735 -9.50267 -9.14170 -8.83887 -7.89650 -6.54937 -4.34575 2.82602 2.89993 3.24189 3.31535 3.44627 3.59871 3.98174 4.20122 4.28397 4.75690 4.90930 5.20956 5.29516 5.33092 5.40523 5.43585 5.49421 5.71944 5.75482 5.91898 5.97905 6.10865 6.48359 6.59320 6.82955 7.37267 7.58989 8.30524 8.36459 8.81196 9.08543 9.45705 10.51592 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.010117 C = 0.008766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.564091 B = 2766.980966 C = 3193.514864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.443 3.557 4 O -0.491 6.491 5 C 0.119 3.881 6 N -0.451 5.451 7 C -0.357 4.357 8 H 0.105 0.895 9 C 0.078 3.922 10 N -0.849 5.849 11 Si 0.882 3.118 12 H -0.275 1.275 13 H -0.294 1.294 14 H -0.250 1.250 15 C 0.536 3.464 16 O -0.584 6.584 17 C -0.174 4.174 18 H 0.137 0.863 19 C -0.175 4.175 20 C 0.048 3.952 21 H 0.133 0.867 22 F -0.181 7.181 23 H 0.094 0.906 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.278 0.722 29 H 0.118 0.882 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -5.633 -4.798 7.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.284 3.716 4 O -0.376 6.376 5 C -0.006 4.006 6 N -0.172 5.172 7 C -0.484 4.484 8 H 0.122 0.878 9 C -0.132 4.132 10 N -0.482 5.482 11 Si 0.710 3.290 12 H -0.201 1.201 13 H -0.222 1.222 14 H -0.175 1.175 15 C 0.326 3.674 16 O -0.468 6.468 17 C -0.195 4.195 18 H 0.155 0.845 19 C -0.213 4.213 20 C 0.012 3.988 21 H 0.150 0.850 22 F -0.162 7.162 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.337 -5.416 -5.150 7.592 hybrid contribution -1.269 0.615 0.028 1.410 sum -2.606 -4.801 -5.123 7.489 Atomic orbital electron populations 1.23123 0.77700 1.02756 1.02227 1.86524 1.22555 1.34586 1.84915 1.25126 0.93325 0.81105 0.72049 1.90542 1.66804 1.36108 1.44179 1.21263 0.85824 0.88386 1.05117 1.43382 1.58979 1.08719 1.06170 1.18942 1.32069 1.02914 0.94484 0.87762 1.25631 0.96063 0.95952 0.95520 1.69735 1.38259 1.09012 1.31178 0.86750 0.83459 0.75936 0.82889 1.20106 1.22180 1.17453 1.19272 0.78544 0.86351 0.83206 1.90545 1.55485 1.68579 1.32150 1.22991 0.99063 0.97728 0.99724 0.84541 1.23709 1.00387 1.01961 0.95228 1.21890 0.86267 0.91262 0.99425 0.84999 1.92794 1.77402 1.62665 1.83312 0.88740 0.92285 0.92436 0.87370 0.86691 0.91180 0.86388 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.36 10.57 -39.25 -0.41 -6.77 16 3 C 0.44 9.21 8.02 36.01 0.29 9.50 16 4 O -0.49 -12.03 12.67 -18.75 -0.24 -12.26 16 5 C 0.12 2.35 5.93 -5.19 -0.03 2.32 16 6 N -0.45 -10.73 1.59 -116.10 -0.18 -10.92 16 7 C -0.36 -9.28 9.30 -14.93 -0.14 -9.42 16 8 H 0.10 2.78 8.06 -52.49 -0.42 2.35 16 9 C 0.08 2.11 3.93 -17.47 -0.07 2.04 16 10 N -0.85 -23.64 13.96 55.50 0.77 -22.86 16 11 Si 0.88 22.99 21.82 -169.99 -3.71 19.28 16 12 H -0.27 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.25 -6.77 5.22 56.52 0.29 -6.47 16 15 C 0.54 12.89 4.90 -10.98 -0.05 12.83 16 16 O -0.58 -14.50 15.90 5.56 0.09 -14.41 16 17 C -0.17 -3.92 3.87 -91.77 -0.36 -4.27 16 18 H 0.14 3.39 3.73 -51.93 -0.19 3.20 16 19 C -0.18 -3.20 10.03 -26.73 -0.27 -3.47 16 20 C 0.05 0.91 7.60 -26.73 -0.20 0.71 16 21 H 0.13 2.19 8.14 -51.93 -0.42 1.77 16 22 F -0.18 -3.65 17.60 2.25 0.04 -3.61 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 25 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 26 H 0.11 1.94 7.50 -51.93 -0.39 1.55 16 27 H 0.12 1.93 8.04 -51.93 -0.42 1.51 16 28 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.12 2.04 7.68 -51.93 -0.40 1.65 16 30 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 261.68 15.07 3.94 3.94 Total: -1.00 -32.09 261.68 -2.64 -34.73 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.18 Total: 1.06 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 0.24 Total: 11.82 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.59 Total: -33.78 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.56 Total: -33.45 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -3.71 Total: 19.28 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.09 -2.64 -34.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338584220.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.923 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds