Wall clock time and date at job start Sun Mar 29 2020 23:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46983 * 274.25933 * 3 2 1 5 5 C 1.37102 * 120.00106 * 263.95627 * 4 3 2 6 6 H 1.07998 * 120.00173 * 200.21991 * 5 4 3 7 7 C 1.38954 * 120.00077 * 20.21626 * 5 4 3 8 8 N 1.31417 * 119.99601 * 21.42674 * 7 5 4 9 9 Si 1.86790 * 120.00035 * 201.43103 * 7 5 4 10 10 H 1.48505 * 109.47450 * 90.00164 * 9 7 5 11 11 H 1.48504 * 109.47188 * 209.99982 * 9 7 5 12 12 H 1.48502 * 109.47416 * 329.99785 * 9 7 5 13 13 C 1.34773 * 120.00224 * 83.95495 * 4 3 2 14 14 O 1.21294 * 120.00261 * 179.97438 * 13 4 3 15 15 C 1.50708 * 119.99906 * 359.97438 * 13 4 3 16 16 C 1.50697 * 109.47044 * 179.97438 * 15 13 4 17 17 C 1.38646 * 120.79175 * 269.71847 * 16 15 13 18 18 C 1.38201 * 119.16467 * 179.80047 * 17 16 15 19 19 N 1.31882 * 120.76281 * 0.48783 * 18 17 16 20 20 C 1.31871 * 121.72313 * 359.74204 * 19 18 17 21 21 C 1.38203 * 120.76304 * 0.02562 * 20 19 18 22 22 H 1.08996 * 109.46430 * 154.26469 * 3 2 1 23 23 H 1.08996 * 109.47057 * 34.26080 * 3 2 1 24 24 H 0.96999 * 119.99348 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.46748 * 299.99980 * 15 13 4 26 26 H 1.09002 * 109.46702 * 59.99678 * 15 13 4 27 27 H 1.08001 * 120.41963 * 0.02562 * 17 16 15 28 28 H 1.07998 * 119.62442 * 180.20740 * 18 17 16 29 29 H 1.07993 * 119.61279 * 179.97438 * 20 19 18 30 30 H 1.08006 * 120.41760 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 -0.1017 1.3774 5 6 3.4422 1.0310 2.0681 6 1 4.0915 0.9619 2.9283 7 6 2.9574 2.2681 1.6613 8 7 1.8746 2.3379 0.9197 9 14 3.8446 3.8316 2.1683 10 1 4.8666 4.1744 1.1469 11 1 2.8653 4.9423 2.2807 12 1 4.5073 3.6215 3.4805 13 6 3.2056 -1.3093 1.9657 14 8 3.6104 -1.3941 3.1059 15 6 2.8249 -2.5544 1.2067 16 6 3.0388 -3.7618 2.0827 17 6 4.2541 -4.4292 2.0871 18 6 4.4149 -5.5302 2.9067 19 7 3.4263 -5.9527 3.6705 20 6 2.2557 -5.3456 3.6885 21 6 2.0231 -4.2353 2.8990 22 1 2.9708 0.9266 -0.4462 23 1 2.9717 -0.8485 -0.5785 24 1 1.5360 3.2014 0.6361 25 1 1.7757 -2.4966 0.9168 26 1 3.4444 -2.6393 0.3138 27 1 5.0661 -4.0906 1.4607 28 1 5.3595 -6.0536 2.9185 29 1 1.4697 -5.7209 4.3269 30 1 1.0621 -3.7427 2.9178 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341981969.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:58 Heat of formation + Delta-G solvation = 37.615624 kcal Electronic energy + Delta-G solvation = -16898.291845 eV Core-core repulsion = 14080.295585 eV Total energy + Delta-G solvation = -2817.996260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02073 -38.71599 -35.88870 -34.46826 -33.39703 -31.91164 -30.94816 -28.41219 -27.42307 -24.76062 -23.20838 -22.12772 -19.33181 -17.99601 -16.62712 -16.45522 -16.22606 -15.99562 -15.33827 -14.75788 -14.22001 -13.93242 -13.54847 -13.36380 -13.07561 -12.78063 -12.38983 -12.19755 -11.82768 -11.64345 -11.38799 -11.23099 -11.09939 -10.63585 -10.44964 -10.38790 -9.41302 -9.32835 -9.27253 -8.88949 -8.63937 -8.10446 -6.56921 -4.08146 1.40333 1.52294 3.05474 3.18647 3.22631 3.46884 3.70949 3.90046 4.00851 4.11529 4.66253 4.72930 4.81873 4.93544 4.98638 5.12331 5.36623 5.39308 5.53998 5.66538 5.74337 5.90857 5.99935 6.04634 6.24780 6.38670 6.62731 6.94902 7.41397 7.83072 8.18756 8.20626 8.66685 8.92795 9.11440 9.64886 10.49374 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.031302 B = 0.006420 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.293879 B = 4360.585498 C = 4874.631081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.243 3.757 3 C 0.221 3.779 4 N -0.442 5.442 5 C -0.316 4.316 6 H 0.108 0.892 7 C 0.033 3.967 8 N -0.875 5.875 9 Si 0.928 3.072 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.460 3.540 14 O -0.564 6.564 15 C -0.107 4.107 16 C -0.002 4.002 17 C -0.160 4.160 18 C 0.093 3.907 19 N -0.496 5.496 20 C 0.095 3.905 21 C -0.159 4.159 22 H 0.125 0.875 23 H 0.085 0.915 24 H 0.274 0.726 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.132 0.868 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -8.584 -3.925 10.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.075 4.075 3 C 0.093 3.907 4 N -0.163 5.163 5 C -0.442 4.442 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.514 5.514 9 Si 0.754 3.246 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.248 3.752 14 O -0.446 6.446 15 C -0.147 4.147 16 C -0.011 4.011 17 C -0.180 4.180 18 C -0.063 4.063 19 N -0.205 5.205 20 C -0.062 4.062 21 C -0.179 4.179 22 H 0.143 0.857 23 H 0.103 0.897 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.150 0.850 28 H 0.169 0.831 29 H 0.169 0.831 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.564 -9.183 -2.892 9.963 hybrid contribution 0.440 1.914 -0.388 2.002 sum 3.004 -7.269 -3.280 8.522 Atomic orbital electron populations 1.80904 1.13567 1.11991 1.08500 1.29285 0.95361 0.90386 0.92470 1.18713 0.81697 1.04032 0.86256 1.43620 1.56721 1.05664 1.10267 1.19710 1.28034 0.82532 1.13973 0.87437 1.25306 0.94771 0.99722 0.97306 1.69842 1.17956 1.26700 1.36878 0.85890 0.78992 0.80338 0.79358 1.20077 1.21074 1.19314 1.19871 0.84211 0.83952 0.87167 1.90587 1.49728 1.86116 1.18180 1.20781 1.03659 0.91886 0.98372 1.19796 0.93310 0.93521 0.94439 1.21963 0.97543 0.97109 1.01393 1.22619 0.97468 0.94175 0.92080 1.67607 1.00859 1.31551 1.20489 1.22614 0.94429 0.92564 0.96585 1.22009 1.00460 0.97895 0.97553 0.85717 0.89688 0.91561 0.88916 0.88503 0.85010 0.83122 0.83133 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.74 18.54 42.15 0.78 -9.96 16 2 C 0.24 5.11 12.82 -20.76 -0.27 4.85 16 3 C 0.22 4.09 4.91 -6.83 -0.03 4.06 16 4 N -0.44 -9.85 2.60 -117.93 -0.31 -10.16 16 5 C -0.32 -7.91 9.27 -14.93 -0.14 -8.04 16 6 H 0.11 2.87 7.43 -52.49 -0.39 2.48 16 7 C 0.03 0.80 4.84 -17.46 -0.08 0.71 16 8 N -0.88 -21.63 9.58 55.50 0.53 -21.10 16 9 Si 0.93 19.25 29.60 -169.99 -5.03 14.22 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.46 9.95 7.56 -10.98 -0.08 9.87 16 14 O -0.56 -14.47 15.71 5.54 0.09 -14.38 16 15 C -0.11 -1.73 4.49 -29.03 -0.13 -1.86 16 16 C 0.00 -0.03 4.41 -104.32 -0.46 -0.49 16 17 C -0.16 -2.33 9.82 -39.44 -0.39 -2.72 16 18 C 0.09 1.31 11.18 -17.54 -0.20 1.12 16 19 N -0.50 -7.72 10.36 -13.25 -0.14 -7.86 16 20 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 21 C -0.16 -2.51 9.82 -39.44 -0.39 -2.90 16 22 H 0.13 2.37 6.63 -51.93 -0.34 2.03 16 23 H 0.09 1.14 6.69 -51.93 -0.35 0.79 16 24 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 25 H 0.09 1.45 7.45 -51.93 -0.39 1.06 16 26 H 0.10 1.23 7.37 -51.93 -0.38 0.84 16 27 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 274.12 15.07 4.13 4.13 Total: -1.00 -31.62 274.12 -4.98 -36.61 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -2.68 Total: 2.70 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -2.36 Total: 5.79 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.87 Total: -49.07 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.38 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.62 -4.98 -36.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341981969.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.221 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds