Wall clock time and date at job start Sun Mar 29 2020 23:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46957 * 2 1 4 4 C 1.50703 * 109.47150 * 240.00037 * 2 1 3 5 5 H 1.07997 * 120.00073 * 245.62358 * 4 2 1 6 6 C 1.37879 * 119.99842 * 65.62793 * 4 2 1 7 7 N 1.31514 * 119.99788 * 197.54083 * 6 4 2 8 8 Si 1.86805 * 119.99995 * 17.53577 * 6 4 2 9 9 H 1.48506 * 109.46799 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.46722 * 60.00578 * 8 6 4 11 11 H 1.48497 * 109.47255 * 300.00112 * 8 6 4 12 12 C 1.50705 * 109.47585 * 120.00172 * 2 1 3 13 13 N 1.30382 * 126.18079 * 60.02156 * 12 2 1 14 14 N 1.28668 * 109.52007 * 179.97438 * 13 12 2 15 15 C 1.31239 * 109.24857 * 0.02562 * 14 13 12 16 16 C 1.47848 * 126.37739 * 180.02562 * 15 14 13 17 17 C 1.39986 * 120.55929 * 359.69181 * 16 15 14 18 18 C 1.38370 * 118.29210 * 179.75977 * 17 16 15 19 19 C 1.38344 * 119.30061 * 0.52037 * 18 17 16 20 20 N 1.31904 * 121.07850 * 359.71888 * 19 18 17 21 21 C 1.31704 * 121.88211 * 0.02632 * 20 19 18 22 22 O 1.34406 * 126.18772 * 239.71749 * 12 2 1 23 23 H 1.09005 * 109.46624 * 186.26306 * 1 2 3 24 24 H 1.09000 * 109.47468 * 306.25857 * 1 2 3 25 25 H 1.08997 * 109.47209 * 66.26307 * 1 2 3 26 26 H 0.96993 * 120.00299 * 354.86275 * 7 6 4 27 27 H 1.08004 * 120.85317 * 0.02562 * 17 16 15 28 28 H 1.07996 * 120.34721 * 180.26391 * 18 17 16 29 29 H 1.07997 * 119.45574 * 179.74639 * 19 18 17 30 30 H 1.07992 * 119.72462 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7975 -0.1755 -2.4794 7 7 1.9156 -0.9296 -3.5504 8 14 1.3117 1.6201 -2.6502 9 1 1.1173 1.9459 -4.0860 10 1 2.3851 2.4789 -2.0882 11 1 0.0461 1.8629 -1.9123 12 6 2.0324 -0.7104 1.2304 13 7 1.7933 -1.9504 1.5549 14 7 2.3785 -2.2242 2.6676 15 6 3.0157 -1.1594 3.0948 16 6 3.8136 -1.0536 4.3350 17 6 3.9446 -2.1520 5.1928 18 6 4.7063 -2.0024 6.3382 19 6 5.2994 -0.7808 6.6022 20 7 5.1544 0.2387 5.7778 21 6 4.4437 0.1444 4.6731 22 8 2.8127 -0.1821 2.1888 23 1 -0.3633 -1.0216 0.1121 24 1 -0.3634 0.6078 0.8286 25 1 -0.3633 0.4137 -0.9407 26 1 2.2394 -1.8403 -3.4692 27 1 3.4670 -3.0934 4.9643 28 1 4.8331 -2.8295 7.0211 29 1 5.8911 -0.6600 7.4975 30 1 4.3485 1.0014 4.0228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346625537.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:33 Heat of formation + Delta-G solvation = 67.377442 kcal Electronic energy + Delta-G solvation = -16593.387513 eV Core-core repulsion = 13776.681823 eV Total energy + Delta-G solvation = -2816.705690 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.62422 -40.23205 -35.66582 -35.07583 -33.34929 -32.16847 -31.55059 -28.87367 -25.15411 -24.67965 -24.19415 -23.01153 -21.89677 -20.31734 -17.84758 -17.62552 -16.84884 -16.75784 -16.29797 -15.80719 -14.51044 -14.19343 -14.14568 -13.59958 -13.33523 -13.07170 -12.35931 -12.30357 -11.90936 -11.76158 -11.60716 -11.31362 -10.81639 -10.59604 -10.50719 -10.09473 -9.90861 -9.83046 -9.76356 -9.16685 -8.52113 -8.39559 -6.67946 -4.31213 0.36738 0.96643 1.96228 2.58843 2.94413 3.25442 3.31391 3.47675 3.60797 3.98788 4.28177 4.31536 4.56322 4.63099 4.73074 4.98720 5.06844 5.18399 5.43045 5.63552 5.69836 5.90349 5.95294 5.99366 6.17138 6.31787 6.33361 6.49567 6.75357 7.12729 7.60777 7.63307 8.19844 8.67481 8.82364 9.37718 10.73563 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043397 B = 0.005187 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.047718 B = 5397.231162 C = 5643.460830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.602 4.602 5 H 0.065 0.935 6 C 0.040 3.960 7 N -0.889 5.889 8 Si 1.041 2.959 9 H -0.279 1.279 10 H -0.279 1.279 11 H -0.270 1.270 12 C 0.238 3.762 13 N -0.295 5.295 14 N -0.268 5.268 15 C 0.157 3.843 16 C -0.051 4.051 17 C -0.034 4.034 18 C -0.171 4.171 19 C 0.107 3.893 20 N -0.481 5.481 21 C 0.131 3.869 22 O -0.227 6.227 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.272 0.728 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.161 0.839 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 2.075 17.436 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.640 4.640 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.522 5.522 8 Si 0.868 3.132 9 H -0.205 1.205 10 H -0.205 1.205 11 H -0.196 1.196 12 C 0.030 3.970 13 N -0.141 5.141 14 N -0.117 5.117 15 C -0.052 4.052 16 C -0.055 4.055 17 C -0.061 4.061 18 C -0.191 4.191 19 C -0.050 4.050 20 N -0.189 5.189 21 C -0.029 4.029 22 O -0.107 6.107 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.168 0.832 28 H 0.162 0.838 29 H 0.178 0.822 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.100 2.781 16.413 16.934 hybrid contribution 0.624 -0.990 0.917 1.486 sum 3.724 1.792 17.330 17.816 Atomic orbital electron populations 1.22262 0.95276 1.01876 1.01001 1.18087 0.93525 0.95479 0.84471 0.93000 1.21743 1.42438 1.10456 0.89341 0.91660 1.25782 0.94255 1.05229 0.91453 1.70839 1.40025 1.10118 1.31169 0.84110 0.77374 0.74851 0.76907 1.20482 1.20505 1.19612 1.29218 0.87187 0.90212 0.90358 1.74444 1.20750 1.12537 1.06355 1.74609 1.08357 1.22815 1.05902 1.24867 1.02549 0.84302 0.93523 1.18254 0.99623 0.96910 0.90718 1.21668 0.94445 0.98182 0.91765 1.22114 0.99158 0.99692 0.98150 1.22980 0.95777 0.88475 0.97794 1.67758 1.15659 1.31964 1.03552 1.23014 0.90696 0.95937 0.93205 1.84852 1.55555 1.41258 1.29033 0.92020 0.95150 0.90738 0.91706 0.83218 0.83775 0.82158 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.85 37.16 0.33 -2.75 16 2 C 0.11 2.45 2.35 -92.92 -0.22 2.23 16 3 H 0.05 1.14 6.80 -51.93 -0.35 0.78 16 4 C -0.60 -16.43 8.81 -34.44 -0.30 -16.73 16 5 H 0.07 1.99 7.99 -52.49 -0.42 1.57 16 6 C 0.04 1.09 5.29 -17.82 -0.09 1.00 16 7 N -0.89 -26.21 13.70 55.43 0.76 -25.45 16 8 Si 1.04 23.15 26.29 -169.99 -4.47 18.68 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.27 -5.40 5.76 56.52 0.33 -5.07 16 12 C 0.24 5.42 6.92 -12.89 -0.09 5.33 16 13 N -0.30 -6.94 12.22 32.58 0.40 -6.54 16 14 N -0.27 -5.61 11.99 32.07 0.38 -5.22 16 15 C 0.16 2.91 8.01 -13.87 -0.11 2.80 16 16 C -0.05 -0.74 5.89 -104.83 -0.62 -1.35 16 17 C -0.03 -0.39 9.83 -38.88 -0.38 -0.77 16 18 C -0.17 -1.50 10.10 -39.49 -0.40 -1.90 16 19 C 0.11 1.00 11.17 -17.48 -0.20 0.80 16 20 N -0.48 -5.90 10.35 -12.92 -0.13 -6.03 16 21 C 0.13 1.73 10.90 -17.13 -0.19 1.54 16 22 O -0.23 -4.60 10.69 4.07 0.04 -4.56 16 23 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.57 4.88 -51.93 -0.25 1.31 16 26 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 27 H 0.15 1.66 7.94 -52.48 -0.42 1.25 16 28 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.17 2.03 7.95 -52.49 -0.42 1.62 16 LS Contribution 270.01 15.07 4.07 4.07 Total: -1.00 -31.15 270.01 -4.00 -35.14 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -2.78 Total: -0.27 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.27 Total: -9.82 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 1.41 Total: -43.24 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: 0.04 Total: -4.56 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.47 Total: 18.68 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.15 -4.00 -35.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346625537.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.519 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds