Wall clock time and date at job start Sun Mar 29 2020 23:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 C 1.50698 * 109.47178 * 240.00135 * 2 1 3 13 13 N 1.30384 * 126.18576 * 299.68850 * 12 2 1 14 14 N 1.28660 * 109.52809 * 179.86172 * 13 12 2 15 15 C 1.31238 * 109.24782 * 0.41176 * 14 13 12 16 16 C 1.47855 * 126.37921 * 179.73475 * 15 14 13 17 17 C 1.39980 * 120.55867 * 359.74343 * 16 15 14 18 18 C 1.38367 * 118.28877 * 179.71384 * 17 16 15 19 19 C 1.38343 * 119.30428 * 0.56156 * 18 17 16 20 20 N 1.31908 * 121.07840 * 359.70046 * 19 18 17 21 21 C 1.31707 * 121.87409 * 0.02562 * 20 19 18 22 22 O 1.34413 * 126.19025 * 120.00027 * 12 2 1 23 23 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 25 25 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 27 27 H 1.08003 * 120.85208 * 0.02562 * 17 16 15 28 28 H 1.08003 * 120.34599 * 180.25785 * 18 17 16 29 29 H 1.07998 * 119.45607 * 179.71894 * 19 18 17 30 30 H 1.08009 * 119.71476 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.1356 -2.2945 3.6038 10 1 3.1433 -0.1956 4.8187 11 1 1.1572 -1.5869 4.8138 12 6 2.0323 -0.7104 -1.2305 13 7 1.7975 -1.9518 -1.5524 14 7 2.3782 -2.2241 -2.6677 15 6 3.0159 -1.1595 -3.0947 16 6 3.8136 -1.0537 -4.3351 17 6 3.9537 -2.1553 -5.1873 18 6 4.7057 -2.0023 -6.3386 19 6 5.2993 -0.7807 -6.6023 20 7 5.1544 0.2388 -5.7780 21 6 4.4442 0.1441 -4.6728 22 8 2.8083 -0.1805 -2.1916 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7136 1.1647 3.4844 27 1 3.4826 -3.0989 -4.9547 28 1 4.8322 -2.8292 -7.0218 29 1 5.8906 -0.6599 -7.4979 30 1 4.3485 1.0015 -4.0229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346625573.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:36 Heat of formation + Delta-G solvation = 65.785445 kcal Electronic energy + Delta-G solvation = -16543.064544 eV Core-core repulsion = 13726.289820 eV Total energy + Delta-G solvation = -2816.774725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.50211 -40.17262 -35.54660 -34.92290 -33.30160 -32.09333 -31.16605 -28.56769 -25.41854 -24.61359 -24.17575 -22.98850 -21.79183 -20.46065 -17.74352 -16.94354 -16.75792 -16.34943 -16.08913 -15.69523 -14.85125 -14.13700 -14.07987 -13.53234 -13.27385 -12.87860 -12.30441 -11.90198 -11.80238 -11.34134 -11.18372 -11.07097 -10.76473 -10.67061 -10.44392 -10.33943 -10.09976 -9.77359 -9.70536 -9.29027 -8.60931 -8.32687 -6.25446 -4.33351 0.43876 1.02112 2.06584 2.71329 3.04500 3.21531 3.29693 3.36404 3.66990 4.07174 4.28874 4.36376 4.62233 4.70466 4.80414 5.06863 5.12357 5.27361 5.50050 5.75296 5.77500 5.98710 6.03476 6.30059 6.38835 6.56134 6.75097 6.82884 7.32596 7.59626 7.68936 7.76973 7.96440 8.67313 8.93847 9.32278 10.81314 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.043317 B = 0.004856 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.236798 B = 5764.451210 C = 5791.403492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.128 3.872 3 H 0.060 0.940 4 C -0.514 4.514 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.907 3.093 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.235 3.765 13 N -0.300 5.300 14 N -0.269 5.269 15 C 0.152 3.848 16 C -0.049 4.049 17 C -0.035 4.035 18 C -0.172 4.172 19 C 0.105 3.895 20 N -0.481 5.481 21 C 0.130 3.870 22 O -0.227 6.227 23 H 0.045 0.955 24 H 0.101 0.899 25 H 0.014 0.986 26 H 0.266 0.734 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.160 0.840 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 -2.031 -14.241 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.108 3.892 3 H 0.078 0.922 4 C -0.552 4.552 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.734 3.266 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.028 3.972 13 N -0.146 5.146 14 N -0.118 5.118 15 C -0.057 4.057 16 C -0.053 4.053 17 C -0.062 4.062 18 C -0.192 4.192 19 C -0.052 4.052 20 N -0.189 5.189 21 C -0.029 4.029 22 O -0.107 6.107 23 H 0.064 0.936 24 H 0.120 0.880 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.168 0.832 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.420 -2.332 -14.209 15.386 hybrid contribution 0.325 -0.105 0.990 1.047 sum 5.745 -2.436 -13.220 14.618 Atomic orbital electron populations 1.21821 0.94727 1.01105 1.01349 1.17870 0.93934 0.95495 0.81924 0.92191 1.20887 1.32869 1.12865 0.88580 0.91648 1.24892 0.94605 0.94910 0.99088 1.69866 1.36007 1.22332 1.24203 0.86276 0.78760 0.79634 0.81922 1.19537 1.20731 1.20569 1.29836 0.86720 0.90064 0.90624 1.74436 1.20955 1.12892 1.06342 1.74583 1.08277 1.22985 1.05931 1.24846 1.02751 0.84411 0.93728 1.18254 0.99429 0.96787 0.90808 1.21660 0.94490 0.98211 0.91812 1.22104 0.99320 0.99677 0.98057 1.22965 0.95850 0.88519 0.97848 1.67760 1.15737 1.31904 1.03542 1.23025 0.90699 0.96018 0.93184 1.84874 1.55592 1.41072 1.29142 0.93604 0.88012 0.96652 0.92370 0.83247 0.83850 0.82233 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.95 37.16 0.33 -2.74 16 2 C 0.13 3.15 2.77 -92.93 -0.26 2.89 16 3 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 4 C -0.51 -13.74 8.55 -34.44 -0.29 -14.03 16 5 H 0.07 1.81 7.74 -52.49 -0.41 1.40 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -23.66 11.33 55.43 0.63 -23.03 16 8 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 C 0.24 5.47 6.92 -12.89 -0.09 5.38 16 13 N -0.30 -7.10 12.22 32.58 0.40 -6.70 16 14 N -0.27 -5.66 11.99 32.07 0.38 -5.28 16 15 C 0.15 2.87 8.01 -13.87 -0.11 2.76 16 16 C -0.05 -0.72 5.89 -104.83 -0.62 -1.34 16 17 C -0.03 -0.41 9.83 -38.88 -0.38 -0.80 16 18 C -0.17 -1.55 10.10 -39.50 -0.40 -1.95 16 19 C 0.11 1.01 11.17 -17.48 -0.20 0.82 16 20 N -0.48 -6.06 10.35 -12.91 -0.13 -6.19 16 21 C 0.13 1.77 10.90 -17.13 -0.19 1.58 16 22 O -0.23 -4.73 10.69 4.03 0.04 -4.69 16 23 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.10 2.51 6.08 -51.93 -0.32 2.20 16 25 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 26 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.15 1.69 7.94 -52.48 -0.42 1.27 16 28 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 29 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.17 2.12 7.95 -52.48 -0.42 1.70 16 LS Contribution 274.38 15.07 4.13 4.13 Total: -1.00 -29.32 274.38 -4.66 -33.98 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -2.80 Total: -2.13 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.29 Total: -5.74 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 1.28 Total: -41.21 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.04 Total: -4.69 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.32 -4.66 -33.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346625573.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.768 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds