Wall clock time and date at job start Sun Mar 29 2020 23:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00055 * 2 1 4 4 H 1.48503 * 109.46790 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47196 * 300.00003 * 3 2 1 6 6 H 1.48497 * 109.47218 * 60.00321 * 3 2 1 7 7 C 1.37878 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46822 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46822 * 180.02562 * 10 9 7 12 12 N 1.30460 * 126.18408 * 89.99900 * 11 10 9 13 13 N 1.28666 * 109.50453 * 179.76579 * 12 11 10 14 14 C 1.31215 * 109.24130 * 0.38638 * 13 12 11 15 15 C 1.47860 * 126.37715 * 179.88591 * 14 13 12 16 16 C 1.39507 * 119.74030 * 359.68666 * 15 14 13 17 17 C 1.38390 * 119.05444 * 179.97438 * 16 15 14 18 18 C 1.38796 * 118.51753 * 0.02562 * 17 16 15 19 19 C 1.38323 * 119.39840 * 0.25390 * 18 17 16 20 20 N 1.31694 * 120.90854 * 359.47366 * 19 18 17 21 21 O 1.34322 * 126.18593 * 270.00143 * 11 10 9 22 22 H 0.96999 * 119.99577 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46924 * 60.00009 * 9 7 2 24 24 H 1.08999 * 109.46723 * 300.00576 * 9 7 2 25 25 H 1.08998 * 109.47153 * 60.00305 * 10 9 7 26 26 H 1.08994 * 109.47280 * 299.99525 * 10 9 7 27 27 H 1.08006 * 120.47861 * 359.95357 * 16 15 14 28 28 H 1.07998 * 120.74202 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.29698 * 179.97438 * 18 17 16 30 30 H 1.07989 * 119.54418 * 179.74701 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 7 1.1069 -5.6339 -1.0545 13 7 0.4948 -6.7039 -0.6857 14 6 0.4607 -6.7526 0.6251 15 6 -0.1532 -7.8171 1.4474 16 6 -0.7776 -8.8986 0.8256 17 6 -1.3471 -9.8872 1.6090 18 6 -1.2745 -9.7627 2.9895 19 6 -0.6451 -8.6607 3.5397 20 7 -0.1063 -7.7360 2.7721 21 8 1.0948 -5.6543 1.0826 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8896 25 1 2.8719 -3.6044 0.8895 26 1 2.8719 -3.6044 -0.8905 27 1 -0.8165 -8.9634 -0.2518 28 1 -1.8377 -10.7361 1.1563 29 1 -1.7096 -10.5171 3.6282 30 1 -0.5909 -8.5594 4.6135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346626271.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:32 Heat of formation + Delta-G solvation = 38.643242 kcal Electronic energy + Delta-G solvation = -16135.009332 eV Core-core repulsion = 13317.057633 eV Total energy + Delta-G solvation = -2817.951699 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.31541 -41.13965 -37.35907 -36.35094 -34.45460 -33.63819 -33.12217 -30.62308 -27.77490 -25.92194 -24.96506 -24.03011 -23.27134 -22.55655 -19.18800 -18.78065 -18.33820 -17.77561 -17.06495 -16.85389 -16.51613 -15.69018 -15.32141 -15.15781 -14.95186 -14.34783 -14.13166 -13.65873 -13.48290 -13.16099 -13.01678 -12.88844 -12.62610 -12.35048 -12.01189 -11.95491 -11.39324 -11.22083 -10.97837 -10.70910 -10.61984 -9.83388 -8.24156 -6.37417 -0.76790 0.19684 0.45947 1.06494 1.22162 1.43910 1.44309 1.58163 2.34052 2.43046 2.71526 3.10613 3.10938 3.62134 3.74738 3.97359 3.99595 4.07958 4.19002 4.22173 4.43430 4.47950 4.51522 4.72513 4.83189 5.04584 5.11932 5.35438 5.44242 5.58293 5.72434 6.07223 6.71998 6.77917 7.04896 7.33128 8.88876 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.046035 B = 0.004110 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.088614 B = 6811.087457 C = 7075.421614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.033 3.967 10 C -0.012 4.012 11 C 0.194 3.806 12 N -0.316 5.316 13 N -0.280 5.280 14 C 0.192 3.808 15 C 0.156 3.844 16 C -0.119 4.119 17 C -0.065 4.065 18 C -0.130 4.130 19 C 0.094 3.906 20 N -0.502 5.502 21 O -0.217 6.217 22 H 0.265 0.735 23 H -0.004 1.004 24 H -0.009 1.009 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.153 0.847 28 H 0.189 0.811 29 H 0.191 0.809 30 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 -21.349 6.928 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.098 0.902 9 C -0.005 4.005 10 C -0.050 4.050 11 C -0.016 4.016 12 N -0.163 5.163 13 N -0.129 5.129 14 C -0.017 4.017 15 C 0.020 3.980 16 C -0.140 4.140 17 C -0.091 4.091 18 C -0.150 4.150 19 C -0.065 4.065 20 N -0.213 5.213 21 O -0.096 6.096 22 H 0.074 0.926 23 H 0.014 0.986 24 H 0.010 0.990 25 H 0.127 0.873 26 H 0.140 0.860 27 H 0.171 0.829 28 H 0.206 0.794 29 H 0.208 0.792 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.626 -20.822 6.037 21.740 hybrid contribution -0.142 0.913 0.641 1.125 sum -1.768 -19.908 6.678 21.073 Atomic orbital electron populations 1.70138 1.08207 1.28026 1.51220 1.26071 0.95737 1.03827 0.94322 0.85243 0.79306 0.77967 0.77583 1.17710 1.20598 1.20554 1.21578 0.94198 0.90805 1.51213 0.90230 1.18972 0.93979 0.92104 0.95445 1.20568 0.96720 0.81416 1.06298 1.28994 0.96571 0.97304 0.78734 1.74405 1.14063 1.01909 1.25942 1.74513 1.16152 1.13880 1.08332 1.25756 0.97394 0.88121 0.90463 1.17805 0.99922 0.90928 0.89306 1.22206 0.96186 0.92501 1.03125 1.22130 0.95142 0.98008 0.93789 1.22924 0.96930 0.98812 0.96328 1.23445 0.92685 0.89161 1.01224 1.67459 1.18517 1.30827 1.04508 1.84937 1.56149 1.30245 1.38233 0.92649 0.98599 0.99019 0.87252 0.86040 0.82889 0.79355 0.79180 0.79018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.98 43.62 29.54 68.60 2.03 45.65 16 4 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 8 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 9 C 0.03 1.78 4.96 29.85 0.15 1.93 16 10 C -0.01 -0.49 5.78 29.85 0.17 -0.32 16 11 C 0.19 8.39 7.73 88.32 0.68 9.07 16 12 N -0.32 -13.99 12.22 -165.35 -2.02 -16.01 16 13 N -0.28 -11.37 11.90 -166.30 -1.98 -13.35 16 14 C 0.19 7.41 8.12 87.33 0.71 8.11 16 15 C 0.16 4.71 6.75 41.85 0.28 5.00 16 16 C -0.12 -2.50 9.74 22.61 0.22 -2.28 16 17 C -0.07 -0.76 10.17 22.44 0.23 -0.53 16 18 C -0.13 -1.28 10.11 22.42 0.23 -1.05 16 19 C 0.09 1.60 11.17 84.73 0.95 2.55 16 20 N -0.50 -14.35 10.31 -185.07 -1.91 -16.26 16 21 O -0.22 -9.29 10.89 -7.78 -0.08 -9.38 16 22 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 23 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 26 H 0.12 4.64 8.14 -2.39 -0.02 4.62 16 27 H 0.15 3.08 7.86 -2.91 -0.02 3.05 16 28 H 0.19 0.58 8.06 -2.91 -0.02 0.55 16 29 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 30 H 0.19 1.96 8.06 -2.92 -0.02 1.94 16 Total: -1.00 -76.33 279.19 1.79 -74.54 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: 1.16 Total: -1.02 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.31 Total: -6.90 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -5.62 Total: -102.90 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.08 Total: -9.38 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -76.33 1.79 -74.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346626271.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.187 kcal (2) G-P(sol) polarization free energy of solvation -76.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds