Wall clock time and date at job start Sun Mar 29 2020 22:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00000 * 2 1 4 4 H 1.48503 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47175 * 299.99648 * 3 2 1 6 6 H 1.48497 * 109.47022 * 59.99791 * 3 2 1 7 7 C 1.37878 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00289 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99473 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47223 * 300.00307 * 9 7 2 11 11 O 1.42902 * 109.47115 * 60.00494 * 9 7 2 12 12 C 1.53002 * 109.46982 * 179.97438 * 9 7 2 13 13 N 1.46893 * 109.47199 * 180.02562 * 12 9 7 14 14 C 1.47975 * 111.00088 * 69.87488 * 13 12 9 15 15 C 1.56176 * 105.86377 * 118.68538 * 14 13 12 16 16 H 1.09002 * 116.95716 * 160.85337 * 15 14 13 17 17 C 1.57642 * 98.66157 * 32.99425 * 15 14 13 18 18 C 1.49198 * 111.02276 * 190.43696 * 13 12 9 19 19 H 1.09002 * 114.65364 * 86.44210 * 18 13 12 20 20 C 1.55789 * 106.52431 * 319.70039 * 18 13 12 21 21 S 1.83688 * 102.75359 * 290.02833 * 20 18 13 22 22 O 1.42101 * 109.46961 * 111.12819 * 21 20 18 23 23 H 0.97001 * 119.99689 * 0.02562 * 1 2 3 24 24 H 0.96699 * 114.00255 * 59.99024 * 11 9 7 25 25 H 1.09001 * 109.47081 * 59.99820 * 12 9 7 26 26 H 1.09003 * 109.47176 * 300.00443 * 12 9 7 27 27 H 1.09002 * 110.18404 * 359.56521 * 14 13 12 28 28 H 1.09003 * 110.18230 * 237.80520 * 14 13 12 29 29 H 1.09003 * 111.56251 * 68.65315 * 17 15 14 30 30 H 1.09004 * 111.55942 * 193.94483 * 17 15 14 31 31 H 1.09001 * 110.75975 * 171.71320 * 20 18 13 32 32 H 1.08996 * 110.75543 * 48.33926 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8902 11 8 0.4300 -2.5751 -1.1666 12 6 2.2453 -3.6621 0.0005 13 7 1.5109 -4.9342 -0.0001 14 6 0.8345 -5.1555 -1.2975 15 6 1.4515 -6.4654 -1.8827 16 1 0.8825 -6.9752 -2.6601 17 6 1.7138 -7.2296 -0.5291 18 6 2.4293 -6.0826 0.2522 19 1 2.6012 -6.3045 1.3054 20 6 3.7336 -5.7910 -0.5484 21 16 3.1926 -5.9923 -2.2922 22 8 3.2000 -4.7273 -2.9394 23 1 -0.4850 0.8401 -0.0004 24 1 0.9225 -2.5299 -1.9976 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6043 -0.8894 27 1 1.0247 -4.3177 -1.9684 28 1 -0.2378 -5.2797 -1.1462 29 1 0.7810 -7.5215 -0.0466 30 1 2.3716 -8.0867 -0.6739 31 1 4.5099 -6.5143 -0.2989 32 1 4.0792 -4.7735 -0.3663 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351482645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:18 Heat of formation + Delta-G solvation = -82.358257 kcal Electronic energy + Delta-G solvation = -16908.389464 eV Core-core repulsion = 14188.341947 eV Total energy + Delta-G solvation = -2720.047517 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 245.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85101 -37.66821 -36.83932 -34.40369 -33.02656 -31.45621 -29.63269 -26.78370 -26.36500 -23.13063 -21.96275 -21.01002 -19.14504 -18.40240 -17.44541 -17.36357 -16.78556 -16.51634 -15.83525 -15.38795 -15.10046 -14.61373 -14.26182 -13.95477 -13.87768 -13.46646 -13.25450 -13.06270 -12.92269 -12.84340 -12.57793 -12.27974 -12.15453 -12.03631 -11.75625 -11.15376 -10.82492 -10.76483 -10.14482 -9.56628 -9.05622 -8.24553 -6.51873 0.80882 1.29451 1.30832 1.43272 1.43840 2.28668 2.76737 2.89584 3.00204 3.45105 3.65948 3.81355 3.94508 4.17181 4.25283 4.31693 4.49201 4.59245 4.77402 4.81270 4.95702 5.00637 5.02909 5.10764 5.18487 5.46268 5.57023 5.84819 6.05687 6.08807 6.59398 7.15463 7.33286 8.80511 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.038664 B = 0.007292 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.006423 B = 3838.758818 C = 3997.506256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.593 4.593 8 H 0.051 0.949 9 C 0.235 3.765 10 H 0.021 0.979 11 O -0.568 6.568 12 C 0.041 3.959 13 N -0.549 5.549 14 C 0.042 3.958 15 C -0.403 4.403 16 H 0.174 0.826 17 C -0.094 4.094 18 C 0.061 3.939 19 H 0.128 0.872 20 C -0.465 4.465 21 S 1.262 4.738 22 O -0.916 6.916 23 H 0.263 0.737 24 H 0.344 0.656 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.173 0.827 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.233 -20.430 -2.754 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.631 4.631 8 H 0.069 0.931 9 C 0.178 3.822 10 H 0.039 0.961 11 O -0.372 6.372 12 C -0.088 4.088 13 N -0.273 5.273 14 C -0.087 4.087 15 C -0.522 4.522 16 H 0.191 0.809 17 C -0.132 4.132 18 C -0.047 4.047 19 H 0.145 0.855 20 C -0.604 4.604 21 S 1.462 4.538 22 O -0.912 6.912 23 H 0.072 0.928 24 H 0.189 0.811 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.164 0.836 31 H 0.191 0.809 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.760 -20.171 -2.847 21.799 hybrid contribution -0.048 3.171 0.324 3.188 sum 7.712 -17.000 -2.523 18.837 Atomic orbital electron populations 1.70233 1.07667 1.27495 1.48046 1.25974 0.95665 1.03168 0.93087 0.85426 0.78839 0.78649 0.78157 1.19059 1.20203 1.19474 1.22008 0.93184 0.93071 1.54816 0.93066 1.19196 0.87969 0.90533 0.84539 0.96072 1.86547 1.39110 1.96025 1.15485 1.22799 0.95979 0.90689 0.99303 1.63844 1.29585 1.02075 1.31818 1.23272 0.99600 0.96246 0.89541 1.29998 1.16131 1.00644 1.05408 0.80853 1.23546 1.02751 0.96818 0.90099 1.24227 0.88213 0.90551 1.01683 0.85455 1.29162 1.05898 1.08091 1.17233 1.69810 0.93498 1.03843 0.86645 1.93071 1.83820 1.47159 1.67154 0.92769 0.81143 0.91663 0.95383 0.93322 0.92062 0.89020 0.83565 0.80887 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.61 12.84 21.45 0.28 -57.34 16 2 C 0.02 1.43 5.40 84.66 0.46 1.89 16 3 Si 0.97 46.87 29.54 68.60 2.03 48.90 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.59 -36.40 8.76 25.60 0.22 -36.18 16 8 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 9 C 0.24 13.68 3.08 29.85 0.09 13.77 16 10 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 11 O -0.57 -33.58 10.29 -148.98 -1.53 -35.11 16 12 C 0.04 1.91 3.13 86.31 0.27 2.18 16 13 N -0.55 -21.09 5.14 -843.86 -4.34 -25.42 16 14 C 0.04 1.55 4.81 87.20 0.42 1.97 16 15 C -0.40 -8.82 5.75 33.34 0.19 -8.63 16 16 H 0.17 2.72 8.14 -2.39 -0.02 2.70 16 17 C -0.09 -1.49 6.25 33.33 0.21 -1.29 16 18 C 0.06 1.50 4.75 46.52 0.22 1.72 16 19 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 20 C -0.46 -10.35 6.27 72.95 0.46 -9.89 16 21 S 1.26 27.81 13.96 -56.49 -0.79 27.02 16 22 O -0.92 -36.52 15.81 -148.98 -2.36 -38.88 16 23 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 24 H 0.34 19.77 7.89 -74.06 -0.58 19.18 16 25 H 0.06 2.99 7.90 -2.39 -0.02 2.97 16 26 H 0.03 1.38 4.93 -2.39 -0.01 1.37 16 27 H 0.05 2.21 4.09 -2.39 -0.01 2.20 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.15 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.30 5.59 -2.39 -0.01 2.28 16 Total: -1.00 -88.17 260.56 -3.62 -91.78 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.55 Total: 23.49 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 2.54 Total: -34.45 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -4.06 Total: -82.76 kcal Atomic # 8 Polarization: -70.10 SS G_CDS: -3.89 Total: -73.99 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 16 Polarization: 27.81 SS G_CDS: -0.79 Total: 27.02 kcal Total: -88.17 -3.62 -91.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351482645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.426 kcal (2) G-P(sol) polarization free energy of solvation -88.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds