Wall clock time and date at job start Sun Mar 29 2020 23:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36869 * 119.99583 * 2 1 4 4 H 1.07999 * 119.99472 * 193.98374 * 3 2 1 5 5 C 1.39041 * 119.99998 * 13.98249 * 3 2 1 6 6 N 1.31371 * 120.00348 * 28.47315 * 5 3 2 7 7 Si 1.86796 * 119.99873 * 208.47367 * 5 3 2 8 8 H 1.48496 * 109.47343 * 94.99571 * 7 5 3 9 9 H 1.48501 * 109.47180 * 214.99619 * 7 5 3 10 10 H 1.48502 * 109.47129 * 334.99773 * 7 5 3 11 11 C 1.34768 * 120.00194 * 180.02562 * 2 1 3 12 12 O 1.21658 * 119.99968 * 184.66291 * 11 2 1 13 13 C 1.47245 * 120.00407 * 4.65408 * 11 2 1 14 14 C 1.39348 * 120.84114 * 314.18772 * 13 11 2 15 15 N 1.31889 * 120.96062 * 179.97438 * 14 13 11 16 16 C 1.31933 * 122.72292 * 359.97438 * 15 14 13 17 17 C 1.38711 * 120.81273 * 0.02562 * 16 15 14 18 18 N 1.37743 * 134.29722 * 179.97438 * 17 16 15 19 19 H 0.97004 * 125.56311 * 0.03126 * 18 17 16 20 20 C 1.36570 * 108.87801 * 180.02562 * 18 17 16 21 21 C 1.34658 * 109.65191 * 0.02562 * 20 18 17 22 22 C 1.40968 * 118.84505 * 359.97438 * 17 16 15 23 23 H 1.08998 * 109.47125 * 267.98651 * 1 2 3 24 24 H 1.08996 * 109.47523 * 27.98977 * 1 2 3 25 25 H 1.08994 * 109.46992 * 147.98966 * 1 2 3 26 26 H 0.96992 * 120.00235 * 179.97438 * 6 5 3 27 27 H 1.08005 * 119.52131 * 0.24939 * 14 13 11 28 28 H 1.07996 * 119.59682 * 180.02562 * 16 15 14 29 29 H 1.08007 * 125.16882 * 180.02562 * 20 18 17 30 30 H 1.08001 * 126.08976 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1854 0.0000 4 1 3.2052 1.1992 -0.2260 5 6 1.4849 2.3716 0.2909 6 7 0.4312 2.3591 1.0755 7 14 2.0904 3.9832 -0.4338 8 1 1.3370 4.2804 -1.6785 9 1 1.8777 5.0779 0.5468 10 1 3.5380 3.8726 -0.7460 11 6 2.1389 -1.1671 -0.0005 12 8 3.3524 -1.1688 0.0851 13 6 1.4064 -2.4402 -0.1046 14 6 0.2697 -2.6755 0.6664 15 7 -0.3884 -3.8147 0.5747 16 6 -0.0210 -4.7873 -0.2376 17 6 1.0969 -4.6523 -1.0476 18 7 1.7182 -5.4622 -1.9724 19 1 1.4312 -6.3538 -2.2247 20 6 2.8042 -4.8052 -2.4763 21 6 2.9050 -3.5909 -1.9032 22 6 1.8379 -3.4545 -0.9899 23 1 -0.3633 -0.0361 1.0270 24 1 -0.3634 0.9074 -0.4823 25 1 -0.3633 -0.8714 -0.5447 26 1 -0.0320 3.1866 1.2788 27 1 -0.0800 -1.9121 1.3457 28 1 -0.5978 -5.6997 -0.2724 29 1 3.4795 -5.1997 -3.2213 30 1 3.6660 -2.8522 -2.1073 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464608678.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:57 Heat of formation + Delta-G solvation = 29.355580 kcal Electronic energy + Delta-G solvation = -17226.762996 eV Core-core repulsion = 14408.408554 eV Total energy + Delta-G solvation = -2818.354442 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.70112 -40.39712 -38.76420 -36.73494 -34.02810 -33.26237 -30.99551 -30.67327 -28.22192 -26.92950 -24.89967 -23.51686 -22.22659 -21.15204 -19.11466 -18.91123 -18.31992 -17.54446 -16.89623 -16.22042 -16.07904 -15.75345 -15.63342 -15.24549 -14.62614 -14.29861 -13.85033 -13.66873 -13.55119 -13.30332 -13.22428 -12.77079 -12.55752 -12.37773 -12.14074 -11.19852 -11.02769 -10.99343 -10.21114 -9.85384 -9.57211 -8.88027 -8.49878 -5.93877 -0.30221 0.43247 1.34938 1.40889 1.54309 1.72853 2.00164 2.13639 2.25155 2.84398 2.92085 3.10799 3.54316 3.72033 3.93188 4.00296 4.21205 4.29025 4.48747 4.53635 4.75940 4.85539 4.89755 5.15840 5.25172 5.41991 5.48993 5.56543 5.88716 6.00349 6.40059 6.67178 6.98875 7.08667 7.35435 7.96549 8.56115 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.036485 B = 0.006769 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.244945 B = 4135.466598 C = 4663.565170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.441 5.441 3 C -0.360 4.360 4 H 0.076 0.924 5 C 0.008 3.992 6 N -0.874 5.874 7 Si 0.988 3.012 8 H -0.262 1.262 9 H -0.270 1.270 10 H -0.274 1.274 11 C 0.469 3.531 12 O -0.633 6.633 13 C -0.136 4.136 14 C 0.078 3.922 15 N -0.486 5.486 16 C 0.134 3.866 17 C 0.019 3.981 18 N -0.550 5.550 19 H 0.445 0.555 20 C 0.111 3.889 21 C -0.250 4.250 22 C -0.067 4.067 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.280 0.720 27 H 0.152 0.848 28 H 0.203 0.797 29 H 0.231 0.769 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.283 -14.912 -8.293 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.157 5.157 3 C -0.487 4.487 4 H 0.094 0.906 5 C -0.197 4.197 6 N -0.510 5.510 7 Si 0.810 3.190 8 H -0.187 1.187 9 H -0.195 1.195 10 H -0.198 1.198 11 C 0.259 3.741 12 O -0.522 6.522 13 C -0.142 4.142 14 C -0.073 4.073 15 N -0.195 5.195 16 C -0.033 4.033 17 C -0.092 4.092 18 N -0.154 5.154 19 H 0.288 0.712 20 C -0.020 4.020 21 C -0.274 4.274 22 C -0.079 4.079 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.169 0.831 28 H 0.220 0.780 29 H 0.248 0.752 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.664 -14.910 -7.637 17.148 hybrid contribution 1.070 1.147 -0.411 1.621 sum -2.594 -13.763 -8.048 16.153 Atomic orbital electron populations 1.21608 0.79506 1.00546 1.00882 1.43784 1.06672 1.04700 1.60538 1.19629 0.95858 0.83914 1.49346 0.90611 1.26086 0.96715 1.02391 0.94514 1.70159 1.21614 1.30496 1.28699 0.85034 0.78778 0.76486 0.78716 1.18733 1.19526 1.19833 1.18259 0.87159 0.84005 0.84641 1.90542 1.15600 1.87595 1.58500 1.20440 0.98048 0.95083 1.00678 1.22642 0.91143 0.95316 0.98203 1.67607 1.30781 1.00937 1.20180 1.22541 0.91996 0.98754 0.90044 1.19328 0.99028 0.92129 0.98714 1.41670 1.23269 1.17115 1.33392 0.71166 1.22669 0.90122 0.90917 0.98341 1.20781 1.02180 1.00654 1.03821 1.18607 0.97773 0.93673 0.97838 0.92965 0.92071 0.92386 0.90999 0.83124 0.78034 0.75248 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.68 7.38 127.77 0.94 6.62 16 2 N -0.44 -24.91 3.02 -662.87 -2.00 -26.91 16 3 C -0.36 -21.61 9.30 84.10 0.78 -20.83 16 4 H 0.08 4.88 7.42 -2.91 -0.02 4.86 16 5 C 0.01 0.42 4.71 84.95 0.40 0.82 16 6 N -0.87 -47.22 11.24 21.68 0.24 -46.98 16 7 Si 0.99 42.72 29.64 68.60 2.03 44.75 16 8 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 C 0.47 26.36 7.18 86.61 0.62 26.98 16 12 O -0.63 -40.14 16.51 -4.22 -0.07 -40.21 16 13 C -0.14 -6.27 5.03 -19.87 -0.10 -6.37 16 14 C 0.08 3.16 8.83 84.95 0.75 3.91 16 15 N -0.49 -16.58 10.30 -194.48 -2.00 -18.59 16 16 C 0.13 3.50 11.21 84.79 0.95 4.45 16 17 C 0.02 0.52 7.31 39.00 0.29 0.81 16 18 N -0.55 -9.51 6.13 -187.54 -1.15 -10.66 16 19 H 0.45 3.10 8.96 -92.71 -0.83 2.27 16 20 C 0.11 2.21 11.84 83.13 0.98 3.19 16 21 C -0.25 -8.53 10.58 22.16 0.23 -8.29 16 22 C -0.07 -2.61 6.02 -21.13 -0.13 -2.74 16 23 H 0.05 2.52 6.98 -2.39 -0.02 2.50 16 24 H 0.06 3.02 6.67 -2.39 -0.02 3.01 16 25 H 0.06 2.50 5.91 -2.39 -0.01 2.48 16 26 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 27 H 0.15 6.28 6.07 -2.91 -0.02 6.27 16 28 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.23 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -80.74 262.06 3.14 -77.59 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.36 Total: 12.44 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.73 Total: 8.55 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -4.91 Total: -103.13 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.07 Total: -40.21 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -80.74 3.14 -77.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464608678.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.949 kcal (2) G-P(sol) polarization free energy of solvation -80.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds