Wall clock time and date at job start Sun Mar 29 2020 23:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38397 * 120.82391 * 2 1 4 4 C 1.39334 * 119.20422 * 179.97438 * 3 2 1 5 5 C 1.48220 * 119.56238 * 179.97438 * 4 3 2 6 6 O 1.21511 * 119.99467 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00171 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00096 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47062 * 179.97438 * 8 7 5 10 10 H 1.07995 * 119.99918 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99684 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99712 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00107 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47268 * 90.00226 * 13 11 9 15 15 H 1.48504 * 109.46713 * 209.99898 * 13 11 9 16 16 H 1.48494 * 109.47284 * 329.99945 * 13 11 9 17 17 N 1.32789 * 120.87803 * 359.75054 * 4 3 2 18 18 C 1.31335 * 121.79858 * 0.52019 * 17 4 3 19 19 C 1.39905 * 120.70069 * 359.47530 * 18 17 4 20 20 C 1.43208 * 120.46767 * 180.27434 * 19 18 17 21 21 N 3.49240 * 81.49348 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47126 * 270.02861 * 1 2 3 23 23 H 1.09006 * 109.47059 * 30.02224 * 1 2 3 24 24 H 1.08998 * 109.46893 * 150.02102 * 1 2 3 25 25 H 1.07993 * 120.39711 * 359.95456 * 3 2 1 26 26 H 0.96999 * 119.99863 * 359.97438 * 7 5 4 27 27 H 1.09003 * 109.46700 * 299.99842 * 8 7 5 28 28 H 1.08999 * 109.47345 * 60.00086 * 8 7 5 29 29 H 0.97000 * 119.99888 * 179.97438 * 12 11 9 30 30 H 1.08002 * 119.65097 * 179.76151 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1885 0.0000 4 6 3.6089 1.1491 0.0005 5 6 4.3763 2.4172 0.0000 6 8 3.7905 3.4817 -0.0005 7 7 5.7238 2.3894 0.0000 8 6 6.4822 3.6427 0.0000 9 6 7.9579 3.3368 0.0006 10 1 8.2968 2.3115 0.0014 11 6 8.8753 4.3662 0.0002 12 7 10.1630 4.0992 0.0002 13 14 8.2890 6.1398 -0.0019 14 1 8.1328 6.6112 1.3975 15 1 9.2854 6.9896 -0.7021 16 1 6.9829 6.2286 -0.7028 17 7 4.2579 -0.0094 0.0060 18 6 3.6224 -1.1587 0.0010 19 6 2.2240 -1.2017 0.0006 20 6 1.5361 -2.4577 0.0010 21 7 0.9904 -3.4540 0.0015 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6962 2.1350 -0.0007 26 1 6.1913 1.5395 0.0007 27 1 6.2307 4.2196 -0.8901 28 1 6.2308 4.2196 0.8899 29 1 10.8084 4.8234 -0.0004 30 1 4.1852 -2.0805 0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467581846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:07 Heat of formation + Delta-G solvation = 22.603514 kcal Electronic energy + Delta-G solvation = -16078.298709 eV Core-core repulsion = 13259.651476 eV Total energy + Delta-G solvation = -2818.647234 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90423 -38.74155 -36.90417 -34.68034 -34.20658 -32.40359 -31.88195 -28.46402 -28.22973 -25.28901 -23.19326 -22.06602 -20.30491 -19.14132 -18.03424 -17.16082 -16.42414 -15.34112 -15.11022 -15.00823 -14.56910 -14.50061 -14.00150 -13.53545 -13.44561 -13.29198 -13.13440 -12.98876 -12.86378 -12.41030 -12.20323 -12.14380 -11.07427 -10.80456 -10.19857 -10.00774 -9.91859 -9.52401 -9.49473 -9.44891 -8.80462 -8.25158 -6.22288 -4.25172 -0.00521 0.84569 2.26341 2.37612 3.13606 3.25456 3.31682 3.36062 3.39391 3.58020 3.80511 4.04705 4.13868 4.31589 4.55257 4.69682 4.93080 5.10561 5.12448 5.14285 5.41451 5.44951 5.60557 5.74743 6.15514 6.71071 6.99573 7.04249 7.08280 7.31775 7.45462 8.07062 8.44465 8.65392 8.81089 9.36425 10.89600 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.047458 B = 0.004469 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.855433 B = 6264.478392 C = 6833.887301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.002 3.998 3 C -0.120 4.120 4 C 0.127 3.873 5 C 0.548 3.452 6 O -0.546 6.546 7 N -0.675 5.675 8 C 0.217 3.783 9 C -0.545 4.545 10 H 0.082 0.918 11 C 0.079 3.921 12 N -0.891 5.891 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.260 1.260 17 N -0.457 5.457 18 C 0.159 3.841 19 C -0.080 4.080 20 C 0.262 3.738 21 N -0.410 5.410 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.409 0.591 27 H 0.030 0.970 28 H 0.026 0.974 29 H 0.268 0.732 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.593 -8.223 0.006 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.008 4.008 3 C -0.141 4.141 4 C -0.011 4.011 5 C 0.330 3.670 6 O -0.425 6.425 7 N -0.322 5.322 8 C 0.095 3.905 9 C -0.583 4.583 10 H 0.100 0.900 11 C -0.125 4.125 12 N -0.528 5.528 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.185 1.185 17 N -0.168 5.168 18 C -0.004 4.004 19 C -0.085 4.085 20 C -0.054 4.054 21 N -0.085 5.085 22 H 0.106 0.894 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.178 0.822 26 H 0.245 0.755 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.673 -8.832 0.008 18.868 hybrid contribution -0.493 0.807 0.024 0.946 sum -17.167 -8.025 0.032 18.950 Atomic orbital electron populations 1.20963 0.89107 1.04166 1.03856 1.20361 0.97119 0.90969 0.92367 1.21997 0.93798 0.99275 0.99019 1.21811 0.91858 0.92858 0.94588 1.17868 0.83360 0.86692 0.79079 1.90759 1.69871 1.29914 1.51911 1.46148 1.04664 1.12561 1.68806 1.19641 0.91705 0.81999 0.97160 1.21075 0.87763 0.95956 1.53499 0.89989 1.24787 0.94630 0.99280 0.93853 1.69877 1.00669 1.32993 1.49218 0.86829 0.79351 0.84511 0.79068 1.19809 1.20871 1.18461 1.67766 1.40050 0.97575 1.11393 1.22989 0.89109 0.96789 0.91526 1.17076 0.94174 0.87217 1.10081 1.25285 0.93574 0.92566 0.93936 1.81279 1.08088 1.10674 1.08452 0.89427 0.89554 0.90915 0.82245 0.75479 0.95189 0.95654 0.92214 0.80988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.67 36.00 0.35 -0.44 16 2 C 0.00 0.02 5.95 -103.93 -0.62 -0.60 16 3 C -0.12 -1.34 9.32 -39.12 -0.36 -1.71 16 4 C 0.13 1.81 6.75 -82.94 -0.56 1.25 16 5 C 0.55 10.14 7.81 -12.16 -0.09 10.04 16 6 O -0.55 -11.45 16.31 5.36 0.09 -11.36 16 7 N -0.67 -13.63 5.54 -62.31 -0.34 -13.98 16 8 C 0.22 5.18 4.50 -5.19 -0.02 5.15 16 9 C -0.55 -14.71 9.83 -34.44 -0.34 -15.05 16 10 H 0.08 2.32 7.84 -52.49 -0.41 1.91 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 13 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 17 N -0.46 -5.95 9.52 -9.46 -0.09 -6.04 16 18 C 0.16 1.56 10.92 -17.14 -0.19 1.37 16 19 C -0.08 -0.73 5.75 -106.71 -0.61 -1.34 16 20 C 0.26 2.55 13.95 -22.47 -0.31 2.23 16 21 N -0.41 -4.75 18.54 41.84 0.78 -3.97 16 22 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 24 H 0.07 0.46 7.18 -51.93 -0.37 0.09 16 25 H 0.16 1.67 7.63 -52.49 -0.40 1.27 16 26 H 0.41 7.72 7.64 -40.82 -0.31 7.41 16 27 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 28 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 279.66 15.07 4.21 4.21 Total: -1.00 -31.29 279.66 -4.81 -36.10 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -2.70 Total: 1.17 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.86 Total: 2.99 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 1.11 Total: -49.31 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.29 -4.81 -36.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467581846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.701 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds