Wall clock time and date at job start Sun Mar 29 2020 23:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38397 * 120.82391 * 2 1 4 4 C 1.39334 * 119.20422 * 179.97438 * 3 2 1 5 5 C 1.48220 * 119.56238 * 179.97438 * 4 3 2 6 6 O 1.21511 * 119.99467 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00171 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00096 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47062 * 179.97438 * 8 7 5 10 10 H 1.07995 * 119.99918 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99684 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99712 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00107 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47268 * 90.00226 * 13 11 9 15 15 H 1.48504 * 109.46713 * 209.99898 * 13 11 9 16 16 H 1.48494 * 109.47284 * 329.99945 * 13 11 9 17 17 N 1.32789 * 120.87803 * 359.75054 * 4 3 2 18 18 C 1.31335 * 121.79858 * 0.52019 * 17 4 3 19 19 C 1.39905 * 120.70069 * 359.47530 * 18 17 4 20 20 C 1.43208 * 120.46767 * 180.27434 * 19 18 17 21 21 N 3.49240 * 81.49348 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47126 * 270.02861 * 1 2 3 23 23 H 1.09006 * 109.47059 * 30.02224 * 1 2 3 24 24 H 1.08998 * 109.46893 * 150.02102 * 1 2 3 25 25 H 1.07993 * 120.39711 * 359.95456 * 3 2 1 26 26 H 0.96999 * 119.99863 * 359.97438 * 7 5 4 27 27 H 1.09003 * 109.46700 * 299.99842 * 8 7 5 28 28 H 1.08999 * 109.47345 * 60.00086 * 8 7 5 29 29 H 0.97000 * 119.99888 * 179.97438 * 12 11 9 30 30 H 1.08002 * 119.65097 * 179.76151 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1885 0.0000 4 6 3.6089 1.1491 0.0005 5 6 4.3763 2.4172 0.0000 6 8 3.7905 3.4817 -0.0005 7 7 5.7238 2.3894 0.0000 8 6 6.4822 3.6427 0.0000 9 6 7.9579 3.3368 0.0006 10 1 8.2968 2.3115 0.0014 11 6 8.8753 4.3662 0.0002 12 7 10.1630 4.0992 0.0002 13 14 8.2890 6.1398 -0.0019 14 1 8.1328 6.6112 1.3975 15 1 9.2854 6.9896 -0.7021 16 1 6.9829 6.2286 -0.7028 17 7 4.2579 -0.0094 0.0060 18 6 3.6224 -1.1587 0.0010 19 6 2.2240 -1.2017 0.0006 20 6 1.5361 -2.4577 0.0010 21 7 0.9904 -3.4540 0.0015 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6962 2.1350 -0.0007 26 1 6.1913 1.5395 0.0007 27 1 6.2307 4.2196 -0.8901 28 1 6.2308 4.2196 0.8899 29 1 10.8084 4.8234 -0.0004 30 1 4.1852 -2.0805 0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467581846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:07 Heat of formation + Delta-G solvation = 0.403964 kcal Electronic energy + Delta-G solvation = -16079.261354 eV Core-core repulsion = 13259.651476 eV Total energy + Delta-G solvation = -2819.609878 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.88735 -40.14352 -37.79425 -36.27553 -35.22751 -34.33820 -32.88038 -30.07524 -29.15463 -26.48130 -24.26369 -23.64683 -21.72472 -20.11921 -19.48166 -18.25024 -18.11680 -16.71617 -16.54032 -16.33443 -15.71671 -15.64698 -15.26245 -14.72523 -14.45144 -14.36057 -14.22971 -14.07853 -13.87405 -13.70359 -13.57651 -13.06330 -12.88438 -12.67155 -11.89536 -11.65471 -11.39712 -10.89155 -10.72218 -10.68856 -10.40021 -9.94610 -8.36534 -6.44534 -0.93557 0.04861 1.33043 1.38089 1.39265 1.46178 1.51724 2.09127 2.16897 2.31841 2.58748 2.76908 2.98858 3.09642 3.43909 3.59378 3.83246 3.99979 4.36688 4.59261 4.65875 4.69245 4.77786 4.99279 5.03255 5.07852 5.26500 5.34903 5.43288 6.06968 6.25693 6.49471 6.57256 6.81207 7.12034 7.27440 8.78381 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.047458 B = 0.004469 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.855433 B = 6264.478392 C = 6833.887301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.018 3.982 3 C -0.112 4.112 4 C 0.104 3.896 5 C 0.550 3.450 6 O -0.573 6.573 7 N -0.683 5.683 8 C 0.229 3.771 9 C -0.550 4.550 10 H 0.056 0.944 11 C 0.025 3.975 12 N -0.932 5.932 13 Si 0.940 3.060 14 H -0.264 1.264 15 H -0.275 1.275 16 H -0.254 1.254 17 N -0.479 5.479 18 C 0.164 3.836 19 C -0.066 4.066 20 C 0.286 3.714 21 N -0.435 5.435 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.167 0.833 26 H 0.414 0.586 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.272 0.728 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.806 -8.543 0.061 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 C -0.133 4.133 4 C -0.033 4.033 5 C 0.335 3.665 6 O -0.454 6.454 7 N -0.331 5.331 8 C 0.105 3.895 9 C -0.587 4.587 10 H 0.074 0.926 11 C -0.175 4.175 12 N -0.571 5.571 13 Si 0.763 3.237 14 H -0.189 1.189 15 H -0.200 1.200 16 H -0.178 1.178 17 N -0.190 5.190 18 C 0.001 3.999 19 C -0.072 4.072 20 C -0.030 4.030 21 N -0.111 5.111 22 H 0.121 0.879 23 H 0.120 0.880 24 H 0.094 0.906 25 H 0.184 0.816 26 H 0.251 0.749 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -18.906 -9.176 0.064 21.015 hybrid contribution 0.128 0.745 0.007 0.755 sum -18.778 -8.431 0.071 20.584 Atomic orbital electron populations 1.21086 0.86755 1.05163 1.05101 1.20600 0.98528 0.89829 0.90306 1.22031 0.92446 1.00470 0.98374 1.21193 0.92402 0.91452 0.98206 1.18408 0.82592 0.88163 0.77296 1.90725 1.70218 1.31615 1.52829 1.45992 1.05547 1.11440 1.70141 1.19256 0.90206 0.83559 0.96449 1.21279 0.89634 0.94942 1.52893 0.92597 1.25640 0.94638 1.03758 0.93451 1.69993 1.01950 1.34564 1.50602 0.85814 0.79099 0.79185 0.79558 1.18856 1.20015 1.17841 1.67669 1.40898 0.98032 1.12404 1.23400 0.89646 0.96587 0.90295 1.17071 0.93962 0.87141 1.09052 1.25080 0.92789 0.92057 0.93075 1.81327 1.09023 1.11455 1.09282 0.87872 0.87956 0.90564 0.81594 0.74938 0.95982 0.96108 0.91847 0.78211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.67 71.23 0.69 -0.43 16 2 C 0.02 0.26 5.95 -19.42 -0.12 0.15 16 3 C -0.11 -2.29 9.32 22.57 0.21 -2.08 16 4 C 0.10 2.86 6.75 41.92 0.28 3.15 16 5 C 0.55 20.38 7.81 86.90 0.68 21.05 16 6 O -0.57 -23.98 16.31 -3.75 -0.06 -24.04 16 7 N -0.68 -28.02 5.54 -469.34 -2.60 -30.62 16 8 C 0.23 11.04 4.50 85.64 0.38 11.42 16 9 C -0.55 -30.35 9.83 25.60 0.25 -30.10 16 10 H 0.06 3.29 7.84 -2.91 -0.02 3.27 16 11 C 0.03 1.42 5.47 84.66 0.46 1.88 16 12 N -0.93 -55.59 13.96 21.45 0.30 -55.30 16 13 Si 0.94 43.06 27.47 68.60 1.88 44.95 16 14 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 17 N -0.48 -11.91 9.52 -183.85 -1.75 -13.66 16 18 C 0.16 2.83 10.92 85.17 0.93 3.76 16 19 C -0.07 -1.03 5.75 -21.22 -0.12 -1.15 16 20 C 0.29 4.72 13.95 88.33 1.23 5.95 16 21 N -0.44 -9.03 18.54 19.01 0.35 -8.68 16 22 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 23 H 0.10 0.66 8.10 -2.38 -0.02 0.64 16 24 H 0.08 0.69 7.18 -2.39 -0.02 0.68 16 25 H 0.17 3.15 7.63 -2.91 -0.02 3.13 16 26 H 0.41 16.01 7.64 -92.71 -0.71 15.30 16 27 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 28 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -67.93 279.66 3.44 -64.49 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.43 Total: 9.25 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 4.89 Total: 13.61 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -3.70 Total: -108.25 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Total: -67.93 3.44 -64.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467581846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.891 kcal (2) G-P(sol) polarization free energy of solvation -67.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds