Wall clock time and date at job start Sun Mar 29 2020 23:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35462 * 125.68599 * 2 1 4 4 N 1.36472 * 107.22385 * 180.02562 * 3 2 1 5 5 C 1.36755 * 132.26261 * 179.97438 * 4 3 2 6 6 C 1.34493 * 120.96909 * 180.02562 * 5 4 3 7 7 C 1.41836 * 120.14366 * 359.97438 * 6 5 4 8 8 C 1.47467 * 120.38611 * 179.97438 * 7 6 5 9 9 O 1.21645 * 119.99769 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00154 * 0.02562 * 8 7 6 11 11 C 1.36775 * 120.00221 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99794 * 0.02562 * 11 10 8 13 13 C 1.39083 * 120.00169 * 179.97438 * 11 10 8 14 14 N 1.31344 * 119.99692 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00142 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46928 * 90.00601 * 15 13 11 17 17 H 1.48497 * 109.47277 * 210.00176 * 15 13 11 18 18 H 1.48500 * 109.47154 * 330.00544 * 15 13 11 19 19 C 1.38592 * 119.22940 * 0.02562 * 7 6 5 20 20 C 1.37217 * 106.96251 * 359.97438 * 4 3 2 21 21 N 1.32687 * 108.05552 * 359.73621 * 20 4 3 22 22 H 1.09002 * 109.47152 * 90.00206 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00306 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00287 * 1 2 3 25 25 H 1.08001 * 126.38737 * 359.95834 * 3 2 1 26 26 H 1.07998 * 119.51236 * 359.97438 * 5 4 3 27 27 H 1.08007 * 119.93194 * 180.02562 * 6 5 4 28 28 H 0.96998 * 120.00028 * 0.02562 * 10 8 7 29 29 H 0.97004 * 119.99772 * 179.97438 * 14 13 11 30 30 H 1.08004 * 120.45706 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1003 0.0000 4 7 3.5917 0.6681 -0.0006 5 6 4.7846 1.3368 -0.0013 6 6 5.9522 0.6693 -0.0023 7 6 5.9618 -0.7490 -0.0021 8 6 7.2389 -1.4863 -0.0037 9 8 7.2389 -2.7027 -0.0040 10 7 8.4061 -0.8124 -0.0049 11 6 9.5906 -1.4962 -0.0059 12 1 9.5907 -2.5762 -0.0062 13 6 10.7951 -0.8008 -0.0077 14 7 10.7950 0.5126 -0.0080 15 14 12.4129 -1.7348 -0.0098 16 1 12.8397 -1.9823 -1.4106 17 1 13.4488 -0.9321 0.6886 18 1 12.2364 -3.0323 0.6905 19 6 4.7570 -1.4339 -0.0014 20 6 3.5558 -0.7036 -0.0003 21 7 2.2840 -1.0817 0.0062 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.9648 2.1278 -0.0006 26 1 4.7891 2.4168 -0.0019 27 1 6.8846 1.2145 -0.0024 28 1 8.4061 0.1576 -0.0044 29 1 11.6351 0.9977 -0.0088 30 1 4.7411 -2.5139 -0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542734861.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:42 Heat of formation + Delta-G solvation = 47.529303 kcal Electronic energy + Delta-G solvation = -16488.251479 eV Core-core repulsion = 13670.685109 eV Total energy + Delta-G solvation = -2817.566370 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.58441 -38.68122 -36.66582 -34.27378 -33.19256 -31.85233 -31.23328 -28.96711 -27.54003 -25.29168 -23.16250 -22.75528 -20.70884 -19.57195 -18.22752 -17.58192 -16.92435 -15.79574 -15.61606 -15.03036 -14.48189 -14.31234 -13.86468 -13.65379 -13.22832 -13.17303 -12.93750 -12.75995 -12.19645 -11.73287 -11.47846 -11.31183 -11.20649 -10.54203 -10.51631 -10.40667 -9.92975 -9.70766 -8.66737 -8.53293 -8.21544 -7.59856 -6.68938 -3.99334 0.85840 1.32829 2.76719 2.88563 3.08643 3.16049 3.21912 3.47551 3.97123 4.27746 4.29404 4.54561 4.78042 4.82030 5.16493 5.24057 5.31845 5.36887 5.47807 5.60487 5.67902 5.79892 5.95725 6.11328 6.32985 6.54688 6.68254 6.78272 7.22854 7.31795 7.83082 8.05091 8.36981 8.93739 9.27406 9.83658 10.47581 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.063492 B = 0.004671 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.892308 B = 5992.988154 C = 6418.734390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.053 3.947 3 C -0.111 4.111 4 N -0.356 5.356 5 C 0.039 3.961 6 C -0.116 4.116 7 C -0.080 4.080 8 C 0.465 3.535 9 O -0.591 6.591 10 N -0.536 5.536 11 C -0.293 4.293 12 H 0.111 0.889 13 C 0.025 3.975 14 N -0.886 5.886 15 Si 0.937 3.063 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.266 1.266 19 C -0.045 4.045 20 C 0.229 3.771 21 N -0.494 5.494 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.178 0.822 26 H 0.163 0.837 27 H 0.156 0.844 28 H 0.393 0.607 29 H 0.278 0.722 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 6.776 0.008 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.244 4.244 4 N -0.028 5.028 5 C -0.082 4.082 6 C -0.137 4.137 7 C -0.090 4.090 8 C 0.253 3.747 9 O -0.478 6.478 10 N -0.170 5.170 11 C -0.423 4.423 12 H 0.128 0.872 13 C -0.179 4.179 14 N -0.526 5.526 15 Si 0.763 3.237 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.068 4.068 20 C -0.013 4.013 21 N -0.216 5.216 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.195 0.805 26 H 0.181 0.819 27 H 0.173 0.827 28 H 0.228 0.772 29 H 0.088 0.912 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.108 5.383 0.022 13.251 hybrid contribution 1.196 1.310 -0.025 1.774 sum -10.912 6.693 -0.002 12.801 Atomic orbital electron populations 1.20092 0.87196 1.02875 1.02471 1.20893 0.96679 0.88170 1.02445 1.22316 0.81028 1.00785 1.20229 1.42771 1.05966 1.08889 1.45132 1.21369 0.82799 0.98403 1.05642 1.21077 0.97627 0.94166 1.00789 1.20376 0.95100 0.92720 1.00762 1.17350 0.82801 0.87417 0.87091 1.90645 1.86704 1.12932 1.57532 1.41849 1.04725 1.09454 1.60948 1.19890 0.81993 0.93927 1.46476 0.87154 1.25424 1.00255 0.95721 0.96516 1.69567 1.29021 1.06223 1.47751 0.85743 0.79915 0.79367 0.78718 1.20036 1.20641 1.19014 1.20539 0.86289 1.01072 0.98908 1.20826 0.94207 0.80217 1.06040 1.70576 0.98168 1.29232 1.23574 0.91030 0.91107 0.90853 0.80514 0.81938 0.82689 0.77179 0.91248 0.82225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.42 36.01 0.38 -0.30 16 2 C 0.05 0.76 7.06 -83.00 -0.59 0.17 16 3 C -0.11 -1.47 11.65 -16.48 -0.19 -1.67 16 4 N -0.36 -5.51 2.94 -62.75 -0.18 -5.69 16 5 C 0.04 0.53 10.91 -16.68 -0.18 0.35 16 6 C -0.12 -1.82 9.47 -39.53 -0.37 -2.20 16 7 C -0.08 -1.56 5.90 -104.63 -0.62 -2.18 16 8 C 0.47 11.18 7.72 -12.50 -0.10 11.08 16 9 O -0.59 -16.26 15.93 5.24 0.08 -16.18 16 10 N -0.54 -13.13 5.23 -11.95 -0.06 -13.19 16 11 C -0.29 -7.80 9.68 -15.03 -0.15 -7.94 16 12 H 0.11 3.08 7.15 -52.49 -0.38 2.70 16 13 C 0.02 0.63 5.50 -17.45 -0.10 0.53 16 14 N -0.89 -22.44 13.05 55.50 0.72 -21.72 16 15 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 C -0.05 -0.87 9.70 -38.57 -0.37 -1.25 16 20 C 0.23 4.16 7.79 -155.94 -1.22 2.95 16 21 N -0.49 -8.90 11.31 -9.02 -0.10 -9.01 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.18 1.62 8.06 -52.49 -0.42 1.19 16 26 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.16 2.23 6.46 -52.48 -0.34 1.89 16 28 H 0.39 8.91 5.95 -40.82 -0.24 8.66 16 29 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.16 3.15 7.67 -52.48 -0.40 2.75 16 LS Contribution 271.22 15.07 4.09 4.09 Total: -1.00 -31.60 271.22 -6.59 -38.19 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -2.61 Total: 9.15 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.50 Total: -0.45 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.37 Total: -49.60 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.08 Total: -16.18 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.60 -6.59 -38.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542734861.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.721 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds