Wall clock time and date at job start Sun Mar 29 2020 23:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36810 * 119.99964 * 2 1 4 4 H 1.07997 * 120.00003 * 139.12649 * 3 2 1 5 5 C 1.39093 * 119.99747 * 319.13117 * 3 2 1 6 6 N 1.31336 * 120.00330 * 353.49853 * 5 3 2 7 7 Si 1.86804 * 119.99638 * 173.50929 * 5 3 2 8 8 H 1.48500 * 109.47187 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47128 * 119.99796 * 7 5 3 10 10 H 1.48501 * 109.46548 * 239.99468 * 7 5 3 11 11 C 1.34771 * 119.99801 * 179.97438 * 2 1 3 12 12 O 1.21581 * 120.00232 * 7.74721 * 11 2 1 13 13 C 1.47901 * 119.99600 * 187.73809 * 11 2 1 14 14 C 1.39860 * 119.47853 * 166.07544 * 13 11 2 15 15 C 1.38094 * 119.57408 * 179.97438 * 14 13 11 16 16 C 1.39290 * 118.38963 * 0.03511 * 15 14 13 17 17 N 1.37365 * 133.59925 * 179.97438 * 16 15 14 18 18 H 0.97004 * 125.05377 * 0.02562 * 17 16 15 19 19 C 1.36719 * 109.89518 * 180.02562 * 17 16 15 20 20 C 1.34297 * 110.01406 * 359.97438 * 19 17 16 21 21 C 1.41172 * 119.11221 * 359.97438 * 16 15 14 22 22 N 1.32509 * 119.48411 * 346.10381 * 13 11 2 23 23 H 1.08998 * 109.47162 * 174.12677 * 1 2 3 24 24 H 1.09000 * 109.47365 * 294.12930 * 1 2 3 25 25 H 1.09005 * 109.46728 * 54.12324 * 1 2 3 26 26 H 0.96995 * 119.99936 * 180.02562 * 6 5 3 27 27 H 1.08004 * 120.21751 * 0.03857 * 14 13 11 28 28 H 1.07997 * 120.80174 * 180.29878 * 15 14 13 29 29 H 1.07994 * 124.99398 * 180.02562 * 19 17 16 30 30 H 1.08004 * 126.47837 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 3.0315 1.2989 0.6120 5 6 1.7079 2.2425 -0.7882 6 7 0.7132 2.0659 -1.6275 7 14 2.5304 3.9143 -0.6533 8 1 3.6166 3.8515 0.3574 9 1 3.1009 4.2930 -1.9709 10 1 1.5270 4.9275 -0.2387 11 6 2.1388 -1.1672 0.0005 12 8 1.5393 -2.2154 -0.1409 13 6 3.6077 -1.1729 0.1730 14 6 4.2618 -2.3742 0.4646 15 6 5.6333 -2.3819 0.6255 16 6 6.3227 -1.1791 0.4907 17 7 7.6485 -0.8316 0.5832 18 1 8.3733 -1.4463 0.7775 19 6 7.7945 0.5095 0.3609 20 6 6.5973 1.0687 0.1209 21 6 5.6002 -0.0027 0.1958 22 7 4.2833 -0.0397 0.0494 23 1 -0.3633 -1.0222 -0.1052 24 1 -0.3634 0.4201 0.9379 25 1 -0.3633 0.6023 -0.8327 26 1 0.4058 2.8034 -2.1773 27 1 3.6981 -3.2903 0.5622 28 1 6.1591 -3.2991 0.8462 29 1 8.7346 1.0409 0.3752 30 1 6.4056 2.1110 -0.0873 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583980464.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:52 Heat of formation + Delta-G solvation = 38.237675 kcal Electronic energy + Delta-G solvation = -17326.029882 eV Core-core repulsion = 14508.060596 eV Total energy + Delta-G solvation = -2817.969285 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.38529 -40.49519 -38.22235 -36.73163 -33.76615 -33.30503 -31.13669 -30.30275 -28.25115 -26.71138 -24.76201 -23.41723 -21.76044 -21.14728 -19.44543 -19.14008 -17.67178 -17.54811 -16.56234 -16.25373 -15.99390 -15.53638 -15.44571 -15.05217 -14.30832 -14.05635 -13.87112 -13.67220 -13.58315 -13.12079 -12.99739 -12.87400 -12.74658 -12.26044 -11.96872 -11.24428 -11.10930 -10.81965 -9.89659 -9.41241 -9.20485 -8.96220 -8.10075 -5.94727 0.02987 0.19313 1.45389 1.46172 1.62718 1.77534 2.06809 2.16959 2.38837 2.89587 3.08572 3.21883 3.50365 3.83095 4.09164 4.20152 4.21932 4.57201 4.66253 4.76824 4.81400 4.87990 5.10786 5.19987 5.40208 5.49690 5.56127 5.79407 6.02333 6.05796 6.61448 6.72287 7.08177 7.28906 7.56950 7.96467 8.85257 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.010319 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.195079 B = 2712.774698 C = 3987.397095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.435 5.435 3 C -0.309 4.309 4 H 0.119 0.881 5 C -0.014 4.014 6 N -0.914 5.914 7 Si 0.992 3.008 8 H -0.256 1.256 9 H -0.281 1.281 10 H -0.277 1.277 11 C 0.495 3.505 12 O -0.634 6.634 13 C 0.064 3.936 14 C -0.122 4.122 15 C -0.082 4.082 16 C 0.050 3.950 17 N -0.570 5.570 18 H 0.439 0.561 19 C 0.105 3.895 20 C -0.231 4.231 21 C 0.040 3.960 22 N -0.414 5.414 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.096 0.904 26 H 0.267 0.733 27 H 0.147 0.853 28 H 0.180 0.820 29 H 0.234 0.766 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.683 -2.165 5.260 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.151 5.151 3 C -0.438 4.438 4 H 0.136 0.864 5 C -0.213 4.213 6 N -0.554 5.554 7 Si 0.815 3.185 8 H -0.179 1.179 9 H -0.207 1.207 10 H -0.203 1.203 11 C 0.285 3.715 12 O -0.523 6.523 13 C -0.083 4.083 14 C -0.145 4.145 15 C -0.110 4.110 16 C -0.062 4.062 17 N -0.176 5.176 18 H 0.280 0.720 19 C -0.024 4.024 20 C -0.257 4.257 21 C -0.096 4.096 22 N -0.125 5.125 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.197 0.803 29 H 0.250 0.750 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.925 -1.779 4.905 17.711 hybrid contribution 0.112 -0.177 -0.041 0.213 sum 17.037 -1.955 4.864 17.825 Atomic orbital electron populations 1.21873 0.81456 1.00967 1.02792 1.43642 1.05894 1.05507 1.60031 1.20450 1.10521 0.88181 1.24679 0.86381 1.26398 0.97006 1.03797 0.94143 1.69769 1.28187 1.33296 1.24194 0.84884 0.78480 0.76835 0.78285 1.17923 1.20731 1.20271 1.18615 0.87014 0.84032 0.81864 1.90534 1.69983 1.32905 1.58896 1.20896 0.93627 0.90282 1.03470 1.21789 0.94981 0.98031 0.99656 1.20632 0.92092 0.96702 1.01545 1.19351 0.86732 0.96206 1.03896 1.41553 1.05113 1.09372 1.61514 0.71973 1.22589 0.99975 0.82223 0.97565 1.21852 0.90466 0.98743 1.14590 1.21173 0.89808 0.95258 1.03342 1.67914 1.07274 1.27504 1.09838 0.93147 0.93820 0.88652 0.92271 0.83565 0.80295 0.75014 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.92 10.15 127.77 1.30 5.22 16 2 N -0.44 -25.33 2.92 -662.15 -1.93 -27.26 16 3 C -0.31 -17.73 7.83 84.12 0.66 -17.07 16 4 H 0.12 6.74 5.59 -2.91 -0.02 6.72 16 5 C -0.01 -0.80 5.31 84.97 0.45 -0.35 16 6 N -0.91 -53.04 10.84 21.69 0.24 -52.81 16 7 Si 0.99 43.92 29.56 68.60 2.03 45.95 16 8 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 C 0.49 28.07 7.56 86.80 0.66 28.72 16 12 O -0.63 -37.33 15.74 -3.97 -0.06 -37.39 16 13 C 0.06 3.11 6.62 42.00 0.28 3.39 16 14 C -0.12 -4.69 9.60 22.63 0.22 -4.47 16 15 C -0.08 -2.31 10.18 22.49 0.23 -2.08 16 16 C 0.05 1.44 7.29 39.25 0.29 1.73 16 17 N -0.57 -10.00 6.05 -187.36 -1.13 -11.14 16 18 H 0.44 3.62 8.96 -92.71 -0.83 2.79 16 19 C 0.10 1.80 11.81 83.03 0.98 2.79 16 20 C -0.23 -6.75 11.08 23.54 0.26 -6.49 16 21 C 0.04 1.54 7.52 41.92 0.32 1.86 16 22 N -0.41 -20.02 6.37 -174.29 -1.11 -21.13 16 23 H 0.05 2.67 6.92 -2.39 -0.02 2.66 16 24 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.10 5.48 5.45 -2.38 -0.01 5.47 16 26 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.15 5.36 7.68 -2.91 -0.02 5.34 16 28 H 0.18 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.23 1.24 8.06 -2.91 -0.02 1.21 16 30 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -79.78 262.98 4.01 -75.76 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.36 Total: 14.77 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 5.63 Total: 13.24 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.94 Total: -112.33 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.06 Total: -37.39 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -79.78 4.01 -75.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583980464.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.001 kcal (2) G-P(sol) polarization free energy of solvation -79.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds